Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_10316 Corchorus olitorius HOM05D007555 ORTHO05D009521 4.0e-50 201.1 96 100.0
Thecc.05G049100 Theobroma cacao HOM05D007555 ORTHO05D009521 4.6e-30 134.4 89 80.9
Gohir.D01G207300 Gossypium hirsutum HOM05D007555 ORTHO05D009521 5.8e-25 117.5 89 68.5
Gorai.002G252400 Gossypium raimondii HOM05D007555 ORTHO05D009521 5.8e-25 117.5 89 68.5
Gohir.A01G218500 Gossypium hirsutum HOM05D007555 ORTHO05D009521 8.3e-24 113.6 89 66.3
Sabra06G0166200 Salix brachista HOM05D007555 ORTHO05D009521 1.0e-21 106.7 86 62.8
Potri.006G215300 Populus trichocarpa HOM05D007555 ORTHO05D009521 7.3e-20 100.5 86 62.8
Nitab4.5_0000643g0170 Nicotiana tabacum HOM05D007555 ORTHO05D009521 1.1e-18 96.7 90 52.2
Prupe.6G246000 Prunus persica HOM05D007555 ORTHO05D009521 1.8e-18 95.9 84 52.4
CsaV3_4G024530 Cucumis sativus L. HOM05D007555 ORTHO05D009521 8.9e-18 93.6 77 57.1
Dinv37229 Davidia involucrata HOM05D007555 ORTHO05D009521 8.9e-18 93.6 86 53.5
Solyc09g006000.3 Solanum lycopersicum HOM05D007555 ORTHO05D009521 8.9e-18 93.6 100 52.0
PGSC0003DMG400023920 Solanum tuberosum HOM05D007555 ORTHO05D009521 1.5e-17 92.8 95 53.7
Actinidia05288 Actinidia chinensis HOM05D007555 ORTHO05D009521 2.0e-17 92.4 85 55.3
FvH4_6g14780 Fragaria vesca HOM05D007555 ORTHO05D009521 2.0e-17 92.4 84 56.0
FAN14G0454 Fragaria x ananassa HOM05D007555 ORTHO05D009521 2.0e-17 92.4 84 56.0
FAN09G3476 Fragaria x ananassa HOM05D007555 ORTHO05D009521 2.6e-17 92.0 84 54.8
FAN05G0792 Fragaria x ananassa HOM05D007555 ORTHO05D009521 5.8e-17 90.9 77 57.1
MD12G1131600 Malus domestica HOM05D007555 ORTHO05D009521 5.8e-17 90.9 84 51.2
TWI53G2115 Tripterygium wilfordii HOM05D007555 ORTHO05D009521 7.6e-17 90.5 84 57.1
Nitab4.5_0006252g0040 Nicotiana tabacum HOM05D007555 ORTHO05D009521 1.3e-16 89.7 95 50.5
RcHm_v2.0_Chr3g0468011 Rosa chinensis HOM05D007555 ORTHO05D009521 1.7e-16 89.4 84 54.8
Sed0003448 Sechium edule HOM05D007555 ORTHO05D009521 1.7e-16 89.4 75 54.7
Lsat_1_v5_gn_2_111420 Lactuca sativa HOM05D007555 ORTHO05D009521 2.9e-16 88.6 79 49.4
MELO3C003085.2 Cucumis melo HOM05D007555 ORTHO05D009521 3.7e-16 88.2 77 53.2
Eucgr.A01211 Eucalyptus grandis HOM05D007555 ORTHO05D009521 3.7e-16 88.2 73 54.8
Ciclev10012844m.g Citrus clementina HOM05D007555 ORTHO05D009521 6.4e-16 87.4 84 51.2
VMungo0720G3150 Vigna mungo HOM05D007555 ORTHO05D009521 6.4e-16 87.4 86 47.7
Manes.08G000300 Manihot esculenta HOM05D007555 ORTHO05D009521 8.3e-16 87.0 75 61.3
Phvul.007G161000 Phaseolus vulgaris HOM05D007555 ORTHO05D009521 8.3e-16 87.0 86 50.0
Nn2g12825 Nelumbo nucifera HOM05D000419 ORTHO05D000692 1.1e-15 86.7 69 56.5
QL07p045973 Quercus lobata HOM05D007555 ORTHO05D009521 1.1e-15 86.7 83 53.0
Migut.L01641 Erythranthe guttata HOM05D007555 ORTHO05D009521 1.4e-15 86.3 93 43.0
CiPaw.09G185700 Carya illinoinensis HOM05D007555 ORTHO05D009521 2.4e-15 85.5 74 56.8
Haze_20696 Corylus avellana HOM05D007555 ORTHO05D009521 2.4e-15 85.5 75 56.0
DCAR_017749 Daucus carota HOM05D007555 ORTHO05D009521 2.4e-15 85.5 69 55.1
TAR636G0687 Trochodendron aralioides HOM05D007555 ORTHO05D009521 2.4e-15 85.5 69 56.5
MSTRG.26743 Avicennia marina HOM05D007555 ORTHO05D009521 9.2e-15 83.6 74 48.6
Cfa017464 Carpinus fangiana HOM05D007555 ORTHO05D009521 9.2e-15 83.6 75 56.0
ClCG04G008630 Citrullus lanatus HOM05D007555 ORTHO05D009521 9.2e-15 83.6 77 49.4
Atru.chr8.2503 Acer truncatum HOM05D007555 ORTHO05D009521 1.6e-14 82.8 61 59.0
Cpa.g.sc114.21 Carica papaya HOM05D007555 ORTHO05D009521 1.6e-14 82.8 75 56.0
Hma1.2p1_0111F.1_g053420 Hydrangea macrophylla HOM05D007555 ORTHO05D009521 1.6e-14 82.8 87 50.6
BcaC06g32006 Brassica carinata HOM05D007555 ORTHO05D009521 3.5e-14 81.6 90 48.9
ATR0693G428 Amborella trichopoda HOM05D007555 ORTHO05D009521 4.6e-14 81.3 65 53.8
CSS0046800 Camellia sinensis var. sinensis HOM05D007555 ORTHO05D009521 4.6e-14 81.3 75 50.7
HanXRQChr07g0204191 Helianthus annuus HOM05D007555 ORTHO05D009521 4.6e-14 81.3 75 52.0
PGR004G0254 Punica granatum HOM05D007555 ORTHO05D009521 4.6e-14 81.3 61 59.0
SGA_v2.0_scaffold94G28647 Striga asiatica HOM05D007555 ORTHO05D009521 4.6e-14 81.3 73 50.7
Carub.0006s0147 Capsella rubella HOM05D007555 ORTHO05D009521 1.0e-13 80.1 67 56.7
Glyma.13G134800 Glycine max HOM05D007555 ORTHO05D009521 1.0e-13 80.1 86 44.2
BcaC03g16355 Brassica carinata HOM05D007555 ORTHO05D009521 1.3e-13 79.7 84 48.8
C02p41790 Brassica napus HOM05D007555 ORTHO05D009521 1.3e-13 79.7 84 48.8
CAN.G350.37 Capsicum annuum HOM05D007555 ORTHO05D009521 1.7e-13 79.3 54 63.0
Lj5g0027152 Lotus japonicus HOM05D007555 ORTHO05D009521 1.7e-13 79.3 81 48.1
Aqoxy2G01932 Aquilegia oxysepala HOM05D007555 ORTHO05D009521 2.3e-13 79.0 61 60.7
CARHR210660 Cardamine hirsuta HOM05D007555 ORTHO05D009521 2.3e-13 79.0 89 46.1
Medtr1g067330 Medicago truncatula HOM05D007555 ORTHO05D009521 3.0e-13 78.6 74 51.4
A10p33000 Brassica napus HOM05D007555 ORTHO05D009521 3.9e-13 78.2 83 50.6
BraA10t45337Z Brassica rapa HOM05D007555 ORTHO05D009521 3.9e-13 78.2 83 50.6
Lalb_Chr02g0153401 Lupinus albus HOM05D007555 ORTHO05D009521 3.9e-13 78.2 52 67.3
ECA238G3221 Erigeron canadensis HOM05D000025 ORTHO05D000040 5.1e-13 77.8 54 57.4
Sp6g39860 Schrenkiella parvula HOM05D007555 ORTHO05D009521 5.1e-13 77.8 83 50.6
C09p73970 Brassica napus HOM05D007555 ORTHO05D009521 6.6e-13 77.4 68 55.9
Lj2A103T67 Lonicera japonica HOM05D007555 ORTHO05D009521 6.6e-13 77.4 97 39.2
Thhalv10014815m.g Eutrema salsugineum HOM05D007555 ORTHO05D009521 8.6e-13 77.0 83 50.6
Medtr0016s0020 Medicago truncatula HOM05D007555 ORTHO05D009521 1.1e-12 76.6 74 50.0
PSO339G2355 Papaver somniferum HOM05D007555 ORTHO05D009521 1.1e-12 76.6 62 58.1
EL10Ac9g22121 Beta vulgaris HOM05D007555 ORTHO05D009521 1.9e-12 75.9 55 61.8
AL6G11950 Arabidopsis lyrata HOM05D007555 ORTHO05D009521 2.5e-12 75.5 89 44.9
CDE05G2937 Ceratophyllum demersum HOM05D007555 ORTHO05D009521 3.3e-12 75.1 67 52.2
THA.LOC104816299 Tarenaya hassleriana HOM05D007555 ORTHO05D009521 3.3e-12 75.1 87 42.5
unitig_0.g697 Utricularia gibba HOM05D000139 ORTHO05D009521 3.3e-12 75.1 83 44.6
GSVIVG01025579001 Vitis vinifera HOM05D007555 ORTHO05D009521 3.3e-12 75.1 53 54.7
Hund06478 Selenicereus undatus HOM05D007555 ORTHO05D009521 4.3e-12 74.7 70 52.9
AT5G02710 Arabidopsis thaliana HOM05D007555 ORTHO05D009521 5.6e-12 74.3 88 43.2
arahy.Tifrunner.gnm1.ann1.ASDQ9T Arachis hypogaea HOM05D007555 ORTHO05D009521 7.3e-12 73.9 50 66.0
BolC9t60132H Brassica oleracea HOM05D007555 ORTHO05D009521 7.3e-12 73.9 84 48.8
PSO384G0825 Papaver somniferum HOM05D007555 ORTHO05D009521 7.3e-12 73.9 97 41.2
AUR62030924 Chenopodium quinoa HOM05D007555 ORTHO05D009521 9.6e-12 73.6 68 51.5
Sc08g0004110 Simmondsia chinensis HOM05D007555 ORTHO05D009521 9.6e-12 73.6 66 50.0
Aa31LG1G22170 Aethionema arabicum HOM05D007555 ORTHO05D009521 2.1e-11 72.4 98 45.9
Ah.01g007300 Amaranthus hybridus HOM05D007555 ORTHO05D009521 2.1e-11 72.4 77 48.1
vmacro08680 Vaccinium macrocarpon HOM05D007555 ORTHO05D009521 2.1e-11 72.4 68 52.9
BcaNung03281 Brassica carinata HOM05D007555 ORTHO05D009521 2.8e-11 72.0 82 48.8
Cc06_g03250 Coffea canephora HOM05D007555 ORTHO05D009521 2.8e-11 72.0 99 40.4
arahy.Tifrunner.gnm1.ann1.UIJ5I4 Arachis hypogaea HOM05D007555 ORTHO05D009521 3.6e-11 71.6 44 68.2
Psat6g069400 Pisum sativum HOM05D007555 ORTHO05D009521 8.1e-11 70.5 68 47.1
TPR.G7549 Trifolium pratense HOM05D007555 ORTHO05D009521 1.1e-10 70.1 39 69.2
C01p26070 Brassica napus HOM05D007555 ORTHO05D009521 5.2e-10 67.8 84 46.4
BolC1t02552H Brassica oleracea HOM05D007555 ORTHO05D009521 5.2e-10 67.8 84 46.4
Lj2P231T24 Lonicera japonica HOM05D007555 ORTHO05D009521 2.0e-09 65.9 91 36.3
SEGI_01945 Sequoiadendron giganteum HOM05D007555 ORTHO05D009521 2.6e-09 65.5 77 41.6
Os03g0363400 Oryza sativa ssp. japonica HOM05D007555 ORTHO05D009521 2.7e-06 55.5 46 50.0
Zm00001eb017700 Zea mays HOM05D007555 ORTHO05D009521 2.7e-06 55.5 46 50.0
BcaC09g50387 Brassica carinata HOM05D007555 ORTHO05D009521 7.8e-06 53.9 53 49.1


User provided reference genes

Program Settings