Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_10011 Corchorus olitorius HOM05D005972 ORTHO05D007548 3.0e-122 441.8 219 100.0
COL.COLO4_27930 Corchorus olitorius HOM05D005972 ORTHO05D007548 1.5e-97 359.8 272 72.4
Thecc.10G118600 Theobroma cacao HOM05D005972 ORTHO05D007548 4.3e-92 341.7 267 66.7
Thecc.04G023500 Theobroma cacao HOM05D005972 ORTHO05D007548 5.8e-89 331.3 267 65.5
Gohir.A06G170300 Gossypium hirsutum HOM05D005972 ORTHO05D007548 9.9e-89 330.5 275 63.6
Duzib106G0263 Durio zibethinus HOM05D005972 ORTHO05D007548 2.2e-88 329.3 275 63.6
Gorai.N007100 Gossypium raimondii HOM05D005972 ORTHO05D007548 1.9e-84 316.2 181 82.9
Gohir.D06G178100 Gossypium hirsutum HOM05D005972 ORTHO05D007548 2.8e-83 312.4 181 81.8
CSS0039579 Camellia sinensis var. sinensis HOM05D005972 ORTHO05D007548 5.8e-81 304.7 269 60.2
Rhsim05G0111400 Rhododendron simsii HOM05D005972 ORTHO05D007548 5.8e-81 304.7 267 59.6
vmacro19910 Vaccinium macrocarpon HOM05D005972 ORTHO05D007548 9.9e-81 303.9 247 64.4
Haze_07503 Corylus avellana HOM05D005972 ORTHO05D007548 8.4e-80 300.8 268 59.3
CiPaw.11G025800 Carya illinoinensis HOM05D005972 ORTHO05D007548 1.9e-79 299.7 271 59.0
Lj9A317T77 Lonicera japonica HOM05D005972 ORTHO05D007548 3.2e-79 298.9 263 59.3
TWI73G1071 Tripterygium wilfordii HOM05D005972 ORTHO05D007548 5.4e-79 298.1 273 56.8
Cpa.g.sc36.20 Carica papaya HOM05D005972 ORTHO05D007548 1.0e-77 293.9 265 58.1
Ciclev10031864m.g Citrus clementina HOM05D005972 ORTHO05D007548 1.7e-77 293.1 272 58.1
arahy.Tifrunner.gnm1.ann1.41EE5L Arachis hypogaea HOM05D005972 ORTHO05D007548 2.3e-77 292.7 265 57.7
Atru.chr12.548 Acer truncatum HOM05D005972 ORTHO05D007548 3.0e-77 292.4 264 59.1
Nitab4.5_0012898g0010 Nicotiana tabacum HOM05D005972 ORTHO05D007548 3.9e-77 292.0 263 58.9
Cfa019136 Carpinus fangiana HOM05D005972 ORTHO05D007548 5.1e-77 291.6 271 57.2
Oeu017286.1 Olea europaea HOM05D005972 ORTHO05D007548 6.6e-77 291.2 271 56.8
arahy.Tifrunner.gnm1.ann1.UKM804 Arachis hypogaea HOM05D005972 ORTHO05D007548 3.3e-76 288.9 265 57.0
Manes.16G061300 Manihot esculenta HOM05D005972 ORTHO05D007548 3.3e-76 288.9 264 58.0
PGR142G0064 Punica granatum HOM05D005972 ORTHO05D007548 3.3e-76 288.9 260 58.5
Actinidia28072 Actinidia chinensis HOM05D005972 ORTHO05D007548 4.3e-76 288.5 270 57.0
Nitab4.5_0000718g0290 Nicotiana tabacum HOM05D005972 ORTHO05D007548 7.4e-76 287.7 263 57.8
CAN.G1513.3 Capsicum annuum HOM05D005972 ORTHO05D007548 9.6e-76 287.3 264 56.8
Lalb_Chr12g0208521 Lupinus albus HOM05D005972 ORTHO05D007548 1.3e-75 287.0 265 57.0
Prupe.1G287600 Prunus persica HOM05D005972 ORTHO05D007548 1.3e-75 287.0 270 57.4
ECA236G4176 Erigeron canadensis HOM05D005972 ORTHO05D007548 2.1e-75 286.2 264 56.8
Potri.001G222400 Populus trichocarpa HOM05D005972 ORTHO05D007548 2.8e-75 285.8 272 56.6
Solyc11g007070.2 Solanum lycopersicum HOM05D005972 ORTHO05D007548 4.8e-75 285.0 263 57.0
Sopen11g002990 Solanum pennellii HOM05D005972 ORTHO05D007548 4.8e-75 285.0 263 57.0
Medtr4g094305 Medicago truncatula HOM05D005972 ORTHO05D007548 6.2e-75 284.6 265 56.6
MD13G1062400 Malus domestica HOM05D005972 ORTHO05D007548 8.1e-75 284.3 271 55.0
Psat0s2194g0120 Pisum sativum HOM05D005972 ORTHO05D007548 8.1e-75 284.3 264 56.1
Phvul.002G206200 Phaseolus vulgaris HOM05D005972 ORTHO05D007548 1.1e-74 283.9 240 60.0
Ca_18332_v3 Cicer arietinum L. HOM05D005972 ORTHO05D007548 1.4e-74 283.5 265 56.6
Eucgr.H00021 Eucalyptus grandis HOM05D005972 ORTHO05D007548 1.4e-74 283.5 179 73.2
Cc02_g21900 Coffea canephora HOM05D005972 ORTHO05D007548 1.8e-74 283.1 177 74.0
RcHm_v2.0_Chr4g0438261 Rosa chinensis HOM05D005972 ORTHO05D007548 5.3e-74 281.6 267 56.9
Lj4g0025997 Lotus japonicus HOM05D005972 ORTHO05D007548 9.0e-74 280.8 265 55.1
GSVIVG01020853001 Vitis vinifera HOM05D005972 ORTHO05D007548 9.0e-74 280.8 270 55.6
SGA_v2.0_scaffold145G36053 Striga asiatica HOM05D005972 ORTHO05D007548 1.5e-73 280.0 264 55.7
Lsat_1_v5_gn_7_80540 Lactuca sativa HOM05D005972 ORTHO05D007548 4.5e-73 278.5 265 55.1
QL04p050517 Quercus lobata HOM05D005972 ORTHO05D007548 5.8e-73 278.1 268 55.2
TPR.G31487 Trifolium pratense HOM05D005972 ORTHO05D007548 5.8e-73 278.1 265 55.1
Dinv24228 Davidia involucrata HOM05D001691 ORTHO05D007548 1.3e-72 276.9 253 59.7
Glyma.05G120600 Glycine max HOM05D005972 ORTHO05D007548 2.9e-72 275.8 265 55.8
MSTRG.27825 Avicennia marina HOM05D005972 ORTHO05D007548 4.9e-72 275.0 262 57.3
FAN07G1127 Fragaria x ananassa HOM05D005972 ORTHO05D007548 1.4e-71 273.5 262 57.3
ClCG05G021510 Citrullus lanatus HOM05D005972 ORTHO05D007548 1.9e-71 273.1 269 54.6
Migut.N01012 Erythranthe guttata HOM05D005972 ORTHO05D007548 1.9e-71 273.1 265 54.3
Sed0010539 Sechium edule HOM05D005972 ORTHO05D007548 1.9e-71 273.1 272 52.6
FvH4_4g29980 Fragaria vesca HOM05D005972 ORTHO05D007548 2.4e-71 272.7 262 56.9
FAN12G3642 Fragaria x ananassa HOM05D005972 ORTHO05D007548 2.4e-71 272.7 262 56.9
FAN22G0246 Fragaria x ananassa HOM05D005972 ORTHO05D007548 2.4e-71 272.7 262 56.9
Glyma.08G075400 Glycine max HOM05D005972 ORTHO05D007548 3.2e-71 272.3 265 55.8
Peaxi162Scf00152g01221 Petunia axillaris HOM05D005972 ORTHO05D007548 5.5e-71 271.6 177 69.5
HanXRQChr11g0337671 Helianthus annuus HOM05D005972 ORTHO05D007548 7.1e-71 271.2 264 55.3
FAN17G2742 Fragaria x ananassa HOM05D005972 ORTHO05D007548 7.9e-70 267.7 265 55.8
CsaV3_5G035730 Cucumis sativus L. HOM05D005972 ORTHO05D007548 1.8e-69 266.5 269 53.5
Nn6g35524 Nelumbo nucifera HOM05D005972 ORTHO05D007548 2.3e-69 266.2 264 53.8
PSO782G4197 Papaver somniferum HOM05D005972 ORTHO05D007548 2.3e-69 266.2 260 55.0
MD16G1060700 Malus domestica HOM05D005972 ORTHO05D007548 8.7e-69 264.2 260 53.8
Zm00001eb427070 Zea mays HOM05D005972 ORTHO05D007548 8.7e-69 264.2 214 62.6
MBI03_g03956_MAGBIO Magnolia biondii HOM05D005972 ORTHO05D007548 2.5e-68 262.7 262 53.4
PSO063G2120 Papaver somniferum HOM05D005972 ORTHO05D007548 2.5e-68 262.7 260 54.6
MELO3C012375.2 Cucumis melo HOM05D005972 ORTHO05D007548 2.1e-67 259.6 269 52.4
THA.LOC104808523 Tarenaya hassleriana HOM05D005972 ORTHO05D007548 8.1e-67 257.7 263 51.7
VMungo0251G2526 Vigna mungo HOM05D005972 ORTHO05D007548 1.8e-66 256.5 287 50.5
Aa31LG9G2330 Aethionema arabicum HOM05D005972 ORTHO05D007548 3.1e-66 255.8 261 52.9
Sc22g0000350 Simmondsia chinensis HOM05D005972 ORTHO05D007548 3.1e-66 255.8 267 49.8
EL10Ac5g12767 Beta vulgaris HOM05D005972 ORTHO05D007548 5.3e-66 255.0 181 63.5
AL7G40820 Arabidopsis lyrata HOM05D005972 ORTHO05D007548 3.4e-65 252.3 271 48.7
Aqoxy4G02449 Aquilegia oxysepala HOM05D005972 ORTHO05D007548 4.5e-65 251.9 262 52.3
SalBow6G6672 Salvia bowleyana HOM05D005972 ORTHO05D007548 4.5e-65 251.9 272 49.3
CDE04G1870 Ceratophyllum demersum HOM05D005972 ORTHO05D007548 1.3e-64 250.4 264 50.8
ATR0174G007 Amborella trichopoda HOM05D005972 ORTHO05D007548 6.5e-64 248.1 261 51.3
BcaNung00313 Brassica carinata HOM05D005972 ORTHO05D007548 8.4e-64 247.7 272 48.2
SHI11404 Sapria himalayana HOM05D005972 ORTHO05D007548 8.4e-64 247.7 257 52.5
BcaB02g07844 Brassica carinata HOM05D005972 ORTHO05D007548 1.4e-63 246.9 265 49.8
BraA01t02169Z Brassica rapa HOM05D005972 ORTHO05D007548 1.9e-63 246.5 264 49.6
AT4G15010 Arabidopsis thaliana HOM05D005972 ORTHO05D007548 2.5e-63 246.1 177 65.5
CARHR221700 Cardamine hirsuta HOM05D005972 ORTHO05D007548 2.5e-63 246.1 272 47.8
A01p22560 Brassica napus HOM05D005972 ORTHO05D007548 5.5e-63 245.0 264 49.2
CANSAT80G0182 Cannabis sativa HOM05D005972 ORTHO05D007548 5.5e-63 245.0 264 51.5
C01p28060 Brassica napus HOM05D005972 ORTHO05D007548 7.1e-63 244.6 264 49.2
Thhalv10025456m.g Eutrema salsugineum HOM05D005972 ORTHO05D007548 7.1e-63 244.6 179 63.7
Ah.12g057320 Amaranthus hybridus HOM05D005972 ORTHO05D007548 9.3e-63 244.2 179 63.1
Carub.0007s2708 Capsella rubella HOM05D005972 ORTHO05D007548 9.3e-63 244.2 271 48.3
ATR0594G009 Amborella trichopoda HOM05D005972 ORTHO05D007548 1.2e-62 243.8 260 50.8
BcaC09g50180 Brassica carinata HOM05D005972 ORTHO05D007548 1.2e-62 243.8 264 49.2
BolC1t02740H Brassica oleracea HOM05D005972 ORTHO05D007548 1.2e-62 243.8 264 49.2
HPP92_021056 Vanilla planifolia HOM05D005972 ORTHO05D007548 5.9e-57 224.9 261 45.6
SEGI_29488 Sequoiadendron giganteum HOM05D005972 ORTHO05D007548 1.2e-49 200.7 263 41.1
DCAR_006139 Daucus carota HOM05D005972 ORTHO05D007548 1.3e-48 197.2 203 53.2
unitig_747.g21237 Utricularia gibba HOM05D005972 ORTHO05D007548 6.3e-43 178.3 302 38.7
Pp3c15_20500 Physcomitrium patens HOM05D005972 ORTHO05D007548 2.4e-42 176.4 246 38.6
Mapoly0188s0014 Marchantia polymorpha HOM05D005972 ORTHO05D007548 7.7e-41 171.4 259 37.5
C06p16620 Brassica napus HOM05D005972 ORTHO05D007548 1.0e-40 171.0 176 50.6
BolC6t36864H Brassica oleracea HOM05D005972 ORTHO05D007548 1.0e-40 171.0 176 50.6
Sp7g13170 Schrenkiella parvula HOM05D005972 ORTHO05D007548 1.0e-40 171.0 168 52.4
A05p16900 Brassica napus HOM05D005972 ORTHO05D007548 2.9e-40 169.5 139 59.0
SpUn0490_0010 Schrenkiella parvula HOM05D005972 ORTHO05D007548 9.4e-39 164.5 121 63.6
BcaC08g44257 Brassica carinata HOM05D005972 ORTHO05D024007 4.7e-38 162.2 123 58.5
Os04g0527500 Oryza sativa ssp. japonica HOM05D005972 ORTHO05D007548 6.1e-38 161.8 120 65.8
CAN.G730.4 Capsicum annuum HOM05D005972 ORTHO05D007548 1.5e-28 130.6 147 51.7
Sabra16G0132100 Salix brachista HOM05D005972 ORTHO05D007548 1.7e-27 127.1 167 43.1
BraA05t20595Z Brassica rapa HOM05D005972 ORTHO05D007548 4.1e-26 122.5 107 58.9
CAN.G730.17 Capsicum annuum HOM05D005972 ORTHO05D007548 2.2e-24 116.7 107 59.8
CAN.G730.12 Capsicum annuum HOM05D005972 ORTHO05D007548 8.0e-14 81.6 50 78.0
CAN.G730.21 Capsicum annuum HOM05D005972 ORTHO05D007548 1.8e-13 80.5 52 76.9
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 1.6e-09 67.4 44 72.7
arahy.Tifrunner.gnm1.ann1.03MD5J Arachis hypogaea HOM05D000575 ORTHO05D011349 4.5e-09 65.9 66 53.0
arahy.Tifrunner.gnm1.ann1.YJH68W Arachis hypogaea HOM05D005972 ORTHO05D083016 1.0e-08 64.7 48 64.6
arahy.Tifrunner.gnm1.ann1.9A5XZY Arachis hypogaea HOM05D005972 ORTHO05D031493 1.3e-08 64.3 83 47.0
CAN.G1940.2 Capsicum annuum HOM05D005972 ORTHO05D007548 1.9e-07 60.5 49 55.1
BcaB04g18277 Brassica carinata HOM05D001003 ORTHO05D002734 8.0e-06 55.1 39 61.5


User provided reference genes

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