Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_09488 Corchorus olitorius HOM05D004171 ORTHO05D004983 2.2e-154 548.9 274 100.0
Duzib213G0518 Durio zibethinus HOM05D004171 ORTHO05D004983 7.2e-137 490.7 275 87.6
Thecc.07G070400 Theobroma cacao HOM05D004171 ORTHO05D004983 7.2e-137 490.7 278 88.8
Duzib170G1088 Durio zibethinus HOM05D004171 ORTHO05D004983 5.3e-132 474.6 276 85.9
Gorai.009G430400 Gossypium raimondii HOM05D004171 ORTHO05D004983 2.7e-128 462.2 275 84.0
Gohir.D05G362300 Gossypium hirsutum HOM05D004171 ORTHO05D004983 3.6e-128 461.8 275 84.0
Gohir.A04G025600 Gossypium hirsutum HOM05D004171 ORTHO05D004983 7.9e-128 460.7 275 83.6
Duzib268G0239 Durio zibethinus HOM05D004171 ORTHO05D004983 6.7e-127 457.6 275 82.5
Gorai.013G165800 Gossypium raimondii HOM05D004171 ORTHO05D004983 1.1e-121 440.3 276 79.3
Gohir.D13G148000 Gossypium hirsutum HOM05D004171 ORTHO05D004983 1.4e-121 439.9 276 79.0
Gohir.A13G143300 Gossypium hirsutum HOM05D004171 ORTHO05D004983 6.1e-120 434.5 277 78.0
Actinidia09971 Actinidia chinensis HOM05D004171 ORTHO05D004983 1.5e-113 413.3 279 72.4
Hma1.2p1_1176F.1_g264170 Hydrangea macrophylla HOM05D004171 ORTHO05D004983 5.5e-113 411.4 274 73.4
Cpa.g.sc12.36 Carica papaya HOM05D004171 ORTHO05D004983 9.4e-113 410.6 274 71.2
Atru.chr2.2929 Acer truncatum HOM05D004171 ORTHO05D004983 2.1e-112 409.5 273 72.2
TAR627G1073 Trochodendron aralioides HOM05D004171 ORTHO05D004983 2.7e-112 409.1 274 71.9
Potri.011G126300 Populus trichocarpa HOM05D004171 ORTHO05D004983 1.8e-111 406.4 275 72.0
Actinidia05147 Actinidia chinensis HOM05D004171 ORTHO05D004983 2.3e-111 406.0 274 71.9
Dinv08350 Davidia involucrata HOM05D004171 ORTHO05D004983 4.0e-111 405.2 234 80.8
Manes.15G082500 Manihot esculenta HOM05D004171 ORTHO05D004983 5.2e-111 404.8 278 70.9
Nitab4.5_0000297g0160 Nicotiana tabacum HOM05D004171 ORTHO05D004983 5.2e-111 404.8 274 69.7
Dinv22359 Davidia involucrata HOM05D004171 ORTHO05D004983 1.5e-110 403.3 274 71.2
Nitab4.5_0009110g0010 Nicotiana tabacum HOM05D004171 ORTHO05D004983 2.0e-110 402.9 274 69.3
Sabra11G0111100 Salix brachista HOM05D004171 ORTHO05D004983 2.0e-110 402.9 275 71.3
Ciclev10009152m.g Citrus clementina HOM05D004171 ORTHO05D004983 3.3e-110 402.1 281 71.2
TAR629G3225 Trochodendron aralioides HOM05D004171 ORTHO05D004983 5.7e-110 401.4 274 71.2
Lj3g0003583 Lotus japonicus HOM05D004171 ORTHO05D004983 1.3e-109 400.2 278 71.2
CSS0009250 Camellia sinensis var. sinensis HOM05D004171 ORTHO05D004983 1.7e-109 399.8 276 70.7
THA.LOC104799905 Tarenaya hassleriana HOM05D004171 ORTHO05D004983 3.7e-109 398.7 282 67.4
Glyma.12G134300 Glycine max HOM05D004171 ORTHO05D004983 6.3e-109 397.9 279 68.8
Cc05_g12750 Coffea canephora HOM05D004171 ORTHO05D004983 2.4e-108 396.0 280 69.6
RcHm_v2.0_Chr5g0036121 Rosa chinensis HOM05D004171 ORTHO05D004983 1.2e-107 393.7 280 70.0
Manes.03G117000 Manihot esculenta HOM05D004171 ORTHO05D004983 2.0e-107 392.9 277 69.0
CiPaw.11G177500 Carya illinoinensis HOM05D004171 ORTHO05D004983 3.5e-107 392.1 276 68.1
ClCG11G018550 Citrullus lanatus HOM05D004171 ORTHO05D004983 3.5e-107 392.1 274 68.2
Cfa020499 Carpinus fangiana HOM05D004171 ORTHO05D004983 4.5e-107 391.7 276 68.8
FAN16G3093 Fragaria x ananassa HOM05D004171 ORTHO05D004983 4.5e-107 391.7 280 69.6
Phvul.011G138400 Phaseolus vulgaris HOM05D004171 ORTHO05D004983 1.0e-106 390.6 278 67.3
Rhsim06G0192400 Rhododendron simsii HOM05D004171 ORTHO05D004983 1.0e-106 390.6 277 69.3
FAN11G0158 Fragaria x ananassa HOM05D004171 ORTHO05D004983 1.7e-106 389.8 280 69.3
Sopen07g031800 Solanum pennellii HOM05D004171 ORTHO05D004983 1.7e-106 389.8 279 66.7
PGSC0003DMG400019283 Solanum tuberosum HOM05D004171 ORTHO05D004983 1.7e-106 389.8 279 66.3
FAN25G0362 Fragaria x ananassa HOM05D004171 ORTHO05D004983 2.2e-106 389.4 280 68.6
THA.LOC104813397 Tarenaya hassleriana HOM05D004171 ORTHO05D004983 3.8e-106 388.7 287 67.2
GSVIVG01014444001 Vitis vinifera HOM05D004171 ORTHO05D004983 3.8e-106 388.7 271 67.9
Haze_09543 Corylus avellana HOM05D004171 ORTHO05D004983 5.0e-106 388.3 276 68.5
Glyma.12G218800 Glycine max HOM05D004171 ORTHO05D004983 5.0e-106 388.3 275 67.3
Psat4g140880 Pisum sativum HOM05D004171 ORTHO05D004983 5.0e-106 388.3 274 68.2
Solyc07g063620.3 Solanum lycopersicum HOM05D004171 ORTHO05D004983 6.5e-106 387.9 276 67.0
arahy.Tifrunner.gnm1.ann1.SXKR4Z Arachis hypogaea HOM05D004171 ORTHO05D004983 1.1e-105 387.1 274 65.7
Medtr8g464760 Medicago truncatula HOM05D004171 ORTHO05D004983 1.1e-105 387.1 275 68.0
VMungo1127G0586 Vigna mungo HOM05D004171 ORTHO05D004983 1.9e-105 386.3 275 66.2
Aqoxy1G02716 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 4.2e-105 385.2 277 68.6
FvH4_3g21110 Fragaria vesca HOM05D004171 ORTHO05D004983 4.2e-105 385.2 280 68.6
MELO3C018184.2 Cucumis melo HOM05D004171 ORTHO05D004983 5.5e-105 384.8 276 68.1
vmacro11810 Vaccinium macrocarpon HOM05D004171 ORTHO05D004983 5.5e-105 384.8 271 69.0
PGR031G0147 Punica granatum HOM05D004171 ORTHO05D004983 1.6e-104 383.3 279 69.5
Peaxi162Scf01216g00047 Petunia axillaris HOM05D004171 ORTHO05D004983 3.6e-104 382.1 274 66.8
MD03G1217700 Malus domestica HOM05D004171 ORTHO05D004983 4.7e-104 381.7 274 66.8
MD11G1235500 Malus domestica HOM05D004171 ORTHO05D004983 6.1e-104 381.3 274 66.8
PSO675G0635 Papaver somniferum HOM05D004171 ORTHO05D004983 6.1e-104 381.3 274 65.0
PSO541G5656 Papaver somniferum HOM05D004171 ORTHO05D004983 8.0e-104 380.9 274 65.3
Ah.04g165380 Amaranthus hybridus HOM05D004171 ORTHO05D004983 1.0e-103 380.6 276 66.7
arahy.Tifrunner.gnm1.ann1.H2QIWP Arachis hypogaea HOM05D004171 ORTHO05D004983 1.0e-103 380.6 251 70.5
arahy.Tifrunner.gnm1.ann1.UD3S3B Arachis hypogaea HOM05D004171 ORTHO05D004983 1.0e-103 380.6 251 70.5
TWI38G2120 Tripterygium wilfordii HOM05D004171 ORTHO05D004983 1.0e-103 380.6 274 67.2
MSTRG.12927 Avicennia marina HOM05D004171 ORTHO05D004983 1.8e-103 379.8 279 65.9
Eucgr.F01074 Eucalyptus grandis HOM05D004171 ORTHO05D004983 2.3e-103 379.4 279 68.1
CAN.G162.108 Capsicum annuum HOM05D004171 ORTHO05D004983 4.0e-103 378.6 276 66.7
Prupe.4G191500 Prunus persica HOM05D004171 ORTHO05D004983 5.2e-103 378.3 275 66.9
Sp7g25280 Schrenkiella parvula HOM05D004171 ORTHO05D004983 5.2e-103 378.3 283 64.3
TPR.G25226 Trifolium pratense HOM05D004171 ORTHO05D004983 5.2e-103 378.3 274 66.8
BcaNung03036 Brassica carinata HOM05D004171 ORTHO05D004983 6.8e-103 377.9 285 63.9
BcaNung05201 Brassica carinata HOM05D004171 ORTHO05D004983 6.8e-103 377.9 285 63.9
arahy.Tifrunner.gnm1.ann1.EUN1K4 Arachis hypogaea HOM05D004171 ORTHO05D004983 1.5e-102 376.7 238 71.8
CSS0026220 Camellia sinensis var. sinensis HOM05D004171 ORTHO05D004983 2.6e-102 375.9 271 67.2
Migut.H01900 Erythranthe guttata HOM05D004171 ORTHO05D004983 3.4e-102 375.6 275 65.5
Lalb_Chr01g0017051 Lupinus albus HOM05D004171 ORTHO05D004983 3.4e-102 375.6 272 64.7
BcaC09g50581 Brassica carinata HOM05D004171 ORTHO05D004983 5.7e-102 374.8 284 64.1
BolC1t02294H Brassica oleracea HOM05D004171 ORTHO05D004983 5.7e-102 374.8 284 64.1
Thhalv10025946m.g Eutrema salsugineum HOM05D004171 ORTHO05D004983 5.7e-102 374.8 282 64.2
CsaV3_3G044320 Cucumis sativus L. HOM05D004171 ORTHO05D004983 7.5e-102 374.4 276 66.3
BcaNung05200 Brassica carinata HOM05D004171 ORTHO05D004983 2.2e-101 372.9 284 63.7
QL08p017518 Quercus lobata HOM05D004171 ORTHO05D004983 2.2e-101 372.9 280 66.4
SalBow7G4117 Salvia bowleyana HOM05D004171 ORTHO05D004983 2.8e-101 372.5 274 65.7
C01p23480 Brassica napus HOM05D004171 ORTHO05D004983 3.7e-101 372.1 284 63.4
A01p18530 Brassica napus HOM05D004171 ORTHO05D004983 4.8e-101 371.7 285 63.5
BraA01t01802Z Brassica rapa HOM05D004171 ORTHO05D004983 4.8e-101 371.7 285 63.5
CARHR267500 Cardamine hirsuta HOM05D004171 ORTHO05D004983 4.8e-101 371.7 283 64.3
AT5G54240 Arabidopsis thaliana HOM05D004171 ORTHO05D004983 6.3e-101 371.3 284 64.4
AUR62029303 Chenopodium quinoa HOM05D004171 ORTHO05D004983 6.3e-101 371.3 275 65.8
Thhalv10014333m.g Eutrema salsugineum HOM05D004171 ORTHO05D004983 6.3e-101 371.3 282 64.5
BraA02t06113Z Brassica rapa HOM05D004171 ORTHO05D004983 8.3e-101 370.9 282 64.5
Gohir.A08G020900 Gossypium hirsutum HOM05D004171 ORTHO05D004983 8.3e-101 370.9 274 67.5
MBI02_g13230_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 1.1e-100 370.5 274 64.2
Aa31LG3G10200 Aethionema arabicum HOM05D004171 ORTHO05D004983 1.8e-100 369.8 283 64.3
BcaB05g22115 Brassica carinata HOM05D004171 ORTHO05D004983 1.8e-100 369.8 282 64.5
A02p10500 Brassica napus HOM05D004171 ORTHO05D004983 1.8e-100 369.8 282 64.5
CiPaw.12G123300 Carya illinoinensis HOM05D004171 ORTHO05D004983 1.8e-100 369.8 276 65.6
AL8G29560 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 2.4e-100 369.4 284 63.7
MSTRG.14383 Avicennia marina HOM05D004171 ORTHO05D004983 2.4e-100 369.4 274 64.6
Sp6g16280 Schrenkiella parvula HOM05D004171 ORTHO05D004983 2.4e-100 369.4 282 64.2
Oeu006766.1 Olea europaea HOM05D004171 ORTHO05D004983 3.1e-100 369.0 274 66.1
PGR083G0998 Punica granatum HOM05D004171 ORTHO05D004983 3.1e-100 369.0 274 66.1
Sc16g0006730 Simmondsia chinensis HOM05D004171 ORTHO05D004983 3.1e-100 369.0 230 72.6
AUR62015590 Chenopodium quinoa HOM05D004171 ORTHO05D004983 4.1e-100 368.6 275 64.7
BcaB08g35778 Brassica carinata HOM05D004171 ORTHO05D004983 7.0e-100 367.9 282 64.2
Gorai.004G029100 Gossypium raimondii HOM05D004171 ORTHO05D004983 9.1e-100 367.5 274 67.5
AL7G25450 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 1.2e-99 367.1 283 62.9
C09p44520 Brassica napus HOM05D004171 ORTHO05D004983 1.2e-99 367.1 282 63.8
BraA10t43247Z Brassica rapa HOM05D004171 ORTHO05D004983 1.2e-99 367.1 282 63.8
Hund23371 Selenicereus undatus HOM05D004171 ORTHO05D004983 2.0e-99 366.3 275 64.0
BcaC04g20360 Brassica carinata HOM05D004171 ORTHO05D004983 2.7e-99 365.9 282 63.5
BolC9t57324H Brassica oleracea HOM05D004171 ORTHO05D004983 2.7e-99 365.9 282 63.5
A10p11530 Brassica napus HOM05D004171 ORTHO05D004983 4.5e-99 365.2 282 63.8
AT4G27350 Arabidopsis thaliana HOM05D004171 ORTHO05D004983 5.9e-99 364.8 283 61.8
CARHR235000 Cardamine hirsuta HOM05D004171 ORTHO05D004983 7.7e-99 364.4 283 62.2
Lj1A854T34 Lonicera japonica HOM05D004171 ORTHO05D004983 1.3e-98 363.6 274 66.1
TWI39G0675 Tripterygium wilfordii HOM05D004171 ORTHO05D004983 1.3e-98 363.6 275 64.7
Eucgr.F03360 Eucalyptus grandis HOM05D004171 ORTHO05D004983 6.5e-98 361.3 235 74.5
MBI18_g19831_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 8.6e-98 360.9 274 61.7
Carub.0007s1352 Capsella rubella HOM05D004171 ORTHO05D004983 1.5e-97 360.1 283 62.2
EL10Ac4g08047 Beta vulgaris HOM05D004171 ORTHO05D004983 1.9e-97 359.8 306 60.1
BcaC09g50583 Brassica carinata HOM05D002586 ORTHO05D007009 2.5e-97 359.4 274 64.2
HanXRQChr02g0031371 Helianthus annuus HOM05D004171 ORTHO05D004983 2.5e-97 359.4 275 64.4
Lalb_Chr19g0134521 Lupinus albus HOM05D004171 ORTHO05D004983 2.5e-97 359.4 274 63.1
CANSAT11G0840 Cannabis sativa HOM05D004171 ORTHO05D004983 3.2e-97 359.0 276 65.2
Lsat_1_v5_gn_7_105981 Lactuca sativa HOM05D004171 ORTHO05D004983 9.5e-97 357.5 280 63.6
Carub.0008s1458 Capsella rubella HOM05D004171 ORTHO05D004983 1.6e-96 356.7 276 64.5
Sed0025378 Sechium edule HOM05D004171 ORTHO05D004983 2.8e-96 355.9 274 64.2
MBI18_g27681_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 1.4e-95 353.6 293 59.0
SGA_v2.0_scaffold9G04958 Striga asiatica HOM05D004171 ORTHO05D004983 1.8e-95 353.2 275 61.5
Sed0003677 Sechium edule HOM05D004171 ORTHO05D004983 2.3e-95 352.8 274 62.0
VMungo1080G1500 Vigna mungo HOM05D004171 ORTHO05D004983 1.2e-94 350.5 274 61.7
DCAR_009989 Daucus carota HOM05D004171 ORTHO05D004983 5.7e-94 348.2 234 69.7
Aa31LG5G10160 Aethionema arabicum HOM05D002586 ORTHO05D007009 9.8e-94 347.4 277 61.0
ATR0693G292 Amborella trichopoda HOM05D004171 ORTHO05D004983 9.8e-94 347.4 279 61.3
FAN21G0927 Fragaria x ananassa HOM05D004171 ORTHO05D004983 5.9e-91 338.2 250 68.0
CDE02G1151 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 8.6e-90 334.3 274 59.5
unitig_699.g19211 Utricularia gibba HOM05D004171 ORTHO05D004983 8.6e-90 334.3 274 60.6
ECA236G3492 Erigeron canadensis HOM05D004171 ORTHO05D004983 1.1e-89 334.0 276 61.2
HPP92_012360 Vanilla planifolia HOM05D004171 ORTHO05D004983 1.3e-85 320.5 276 56.9
DCAR_008697 Daucus carota HOM05D004171 ORTHO05D004983 3.2e-84 315.8 237 63.3
Potri.001G408001 Populus trichocarpa HOM05D004171 ORTHO05D004983 3.1e-79 299.3 181 75.1
Os07g0559400 Oryza sativa ssp. japonica HOM05D004171 ORTHO05D004983 2.9e-77 292.7 284 50.7
CDE01G0586 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 3.7e-77 292.4 250 59.2
Zm00001eb324170 Zea mays HOM05D004171 ORTHO05D004983 3.5e-75 285.8 275 51.6
CAN.G847.1 Capsicum annuum HOM05D004171 ORTHO05D004983 6.0e-75 285.0 198 68.7
Aqoxy1G03898 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 6.6e-74 281.6 262 50.0
Mapoly0102s0009 Marchantia polymorpha HOM05D004171 ORTHO05D004983 2.2e-69 266.5 274 47.4
SEGI_27365 Sequoiadendron giganteum HOM05D004171 ORTHO05D004983 4.7e-64 248.8 233 52.4
SMO116G0055 Selaginella moellendorffii HOM05D004171 ORTHO05D004983 8.9e-63 244.6 235 48.1
CAN.G187.6 Capsicum annuum HOM05D004171 ORTHO05D004983 1.2e-62 244.2 186 62.9
Pp3c3_11900 Physcomitrium patens HOM05D004171 ORTHO05D004983 2.1e-59 233.4 281 42.0
Nn1g03875 Nelumbo nucifera HOM05D004171 ORTHO05D004983 2.7e-59 233.0 183 63.9
Gohir.D08G031500 Gossypium hirsutum HOM05D004171 ORTHO05D004983 3.3e-57 226.1 174 66.1
Oeu019367.1 Olea europaea HOM05D004171 ORTHO05D004983 1.2e-56 224.2 156 70.5
Ca_22993_v3 Cicer arietinum L. HOM05D004171 ORTHO05D004983 2.4e-52 209.9 157 65.0
Nn1g06780 Nelumbo nucifera HOM05D004171 ORTHO05D004983 2.8e-48 196.4 156 64.1
CDE12G0832 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 3.1e-47 193.0 243 44.9
AagrBONN_evm.TU.Sc2ySwM_228.913 Anthoceros agrestis HOM05D004171 ORTHO05D004983 4.5e-46 189.1 216 44.9
CBR_g24077 Chara braunii HOM05D004171 ORTHO05D004983 4.6e-43 179.1 237 40.9
C02p17300 Brassica napus HOM05D004171 ORTHO05D004983 4.9e-37 159.1 135 60.0
BolC2t07830H Brassica oleracea HOM05D004171 ORTHO05D004983 1.9e-36 157.1 135 59.3
BolC2t07836H Brassica oleracea HOM05D004171 ORTHO05D004983 1.9e-36 157.1 135 59.3
BcaNung05202 Brassica carinata HOM05D004171 ORTHO05D004983 7.9e-27 125.2 114 54.4
CBR_g54085 Chara braunii HOM05D000019 ORTHO05D000002 3.1e-23 113.2 117 46.2
AL9U10820 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 3.6e-19 99.8 74 60.8
CDE05G1305 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 6.3e-16 89.0 182 31.9
Actinidia37164 Actinidia chinensis HOM05D004171 ORTHO05D057920 2.0e-06 57.4 60 46.7


User provided reference genes

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