Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_09066 Corchorus olitorius HOM05D004016 ORTHO05D004732 5.6e-113 411.0 212 100.0
Gohir.A08G065500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 9.0e-87 323.9 216 81.0
Gohir.D08G074000 Gossypium hirsutum HOM05D004016 ORTHO05D004732 3.4e-86 322.0 216 80.6
Gorai.004G078400 Gossypium raimondii HOM05D004016 ORTHO05D004732 3.4e-86 322.0 216 80.6
Thecc.01G275600 Theobroma cacao HOM05D004016 ORTHO05D004732 4.4e-86 321.6 215 80.5
Duzib133G1129 Durio zibethinus HOM05D004016 ORTHO05D004732 2.1e-83 312.8 215 79.5
Duzib138G0182 Durio zibethinus HOM05D004016 ORTHO05D004732 1.5e-81 306.6 217 77.9
Gohir.A11G124100 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.1e-68 263.8 214 69.6
Gohir.A08G186500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.9e-68 263.1 214 69.6
Gorai.004G216600 Gossypium raimondii HOM05D004016 ORTHO05D004732 1.9e-68 263.1 214 69.2
Gohir.D08G204600 Gossypium hirsutum HOM05D004016 ORTHO05D004732 3.2e-68 262.3 215 69.3
Gorai.007G138300 Gossypium raimondii HOM05D004016 ORTHO05D004732 7.9e-67 257.7 212 67.0
Cpa.g.sc487.4 Carica papaya HOM05D004016 ORTHO05D004732 1.8e-66 256.5 220 67.3
Gohir.D11G129300 Gossypium hirsutum HOM05D004016 ORTHO05D004732 9.6e-65 250.8 212 65.1
Manes.05G079900 Manihot esculenta HOM05D004016 ORTHO05D004732 2.3e-58 229.6 219 62.1
Potri.005G211400 Populus trichocarpa HOM05D004016 ORTHO05D004732 1.1e-57 227.3 226 61.9
Manes.01G206100 Manihot esculenta HOM05D004016 ORTHO05D004732 1.6e-56 223.4 219 63.0
Dinv32914 Davidia involucrata HOM05D004016 ORTHO05D004732 2.8e-56 222.6 225 61.3
Prupe.8G238400 Prunus persica HOM05D004016 ORTHO05D004732 4.8e-56 221.9 219 59.8
Atru.chr5.1471 Acer truncatum HOM05D004016 ORTHO05D004732 2.4e-55 219.5 224 58.9
Ciclev10022155m.g Citrus clementina HOM05D004016 ORTHO05D004732 2.4e-55 219.5 228 59.2
TWI18G0383 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 2.4e-55 219.5 215 61.9
Ca_09744_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 3.4e-54 215.7 212 58.5
RcHm_v2.0_Chr6g0290651 Rosa chinensis HOM05D004016 ORTHO05D004732 3.4e-54 215.7 230 57.0
MD11G1282800 Malus domestica HOM05D004016 ORTHO05D004732 5.9e-54 214.9 219 61.2
FvH4_2g23281 Fragaria vesca HOM05D004016 ORTHO05D004732 1.7e-53 213.4 221 57.0
Haze_04687 Corylus avellana HOM05D004016 ORTHO05D004732 2.2e-53 213.0 214 60.7
Hma1.2p1_0667F.1_g199710 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 3.8e-53 212.2 217 60.8
TWI12G1445 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 1.1e-52 210.7 216 61.1
Cc01_g19290 Coffea canephora HOM05D004016 ORTHO05D004732 1.4e-52 210.3 223 60.5
MD03G1262100 Malus domestica HOM05D004016 ORTHO05D004732 1.4e-52 210.3 221 60.2
Cfa006163 Carpinus fangiana HOM05D004016 ORTHO05D004732 1.9e-52 209.9 214 59.3
FAN15G1959 Fragaria x ananassa HOM05D004016 ORTHO05D004732 1.9e-52 209.9 209 59.3
FAN24G3262 Fragaria x ananassa HOM05D004016 ORTHO05D004732 2.5e-52 209.5 221 56.6
FAN27G2694 Fragaria x ananassa HOM05D004016 ORTHO05D004732 7.2e-52 208.0 209 58.9
FAN20G3152 Fragaria x ananassa HOM05D004016 ORTHO05D004732 1.6e-51 206.8 217 58.1
Hma1.2p1_0822F.1_g224340 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 1.6e-51 206.8 226 57.1
Potri.002G050900 Populus trichocarpa HOM05D004016 ORTHO05D004732 2.1e-51 206.5 227 55.9
ClCG07G000350 Citrullus lanatus HOM05D004016 ORTHO05D004732 3.6e-51 205.7 212 58.5
Sabra05G0161500 Salix brachista HOM05D004016 ORTHO05D004732 4.6e-51 205.3 223 57.4
Lj2E1169T0 Lonicera japonica HOM05D004016 ORTHO05D004732 1.0e-50 204.1 218 58.7
Sabra02G0041700 Salix brachista HOM05D004016 ORTHO05D004732 5.1e-50 201.8 228 56.6
THA.LOC104825992 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 6.7e-50 201.4 221 57.5
arahy.Tifrunner.gnm1.ann1.256EAD Arachis hypogaea HOM05D004016 ORTHO05D004732 3.3e-49 199.1 221 56.6
THA.LOC104801244 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 3.3e-49 199.1 210 57.1
MSTRG.18246 Avicennia marina HOM05D004016 ORTHO05D004732 4.3e-49 198.7 217 56.7
TAR636G0684 Trochodendron aralioides HOM05D004016 ORTHO05D004732 4.3e-49 198.7 217 58.1
CsaV3_6G037200 Cucumis sativus L. HOM05D004016 ORTHO05D004732 7.4e-49 198.0 213 55.9
Lalb_Chr02g0142631 Lupinus albus HOM05D004016 ORTHO05D004732 1.7e-48 196.8 214 57.0
Sc05g0001440 Simmondsia chinensis HOM05D004016 ORTHO05D004732 1.7e-48 196.8 212 56.1
vmacro14911 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 1.7e-48 196.8 226 58.0
MSTRG.21548 Avicennia marina HOM05D004016 ORTHO05D004732 3.1e-47 192.6 225 55.1
MELO3C014394.2 Cucumis melo HOM05D004016 ORTHO05D004732 3.1e-47 192.6 208 56.2
TAR633G2817 Trochodendron aralioides HOM05D004016 ORTHO05D004732 4.1e-47 192.2 220 56.4
EL10Ac5g10544 Beta vulgaris HOM05D004016 ORTHO05D004732 9.1e-47 191.0 213 55.9
Lalb_Chr06g0162891 Lupinus albus HOM05D004016 ORTHO05D004732 9.1e-47 191.0 214 55.1
Lalb_Chr21g0306401 Lupinus albus HOM05D004016 ORTHO05D004732 1.5e-46 190.3 214 55.6
Ah.02g110900 Amaranthus hybridus HOM05D004016 ORTHO05D004732 2.0e-46 189.9 213 55.9
Actinidia21126 Actinidia chinensis HOM05D004016 ORTHO05D004732 2.6e-46 189.5 221 55.7
Ca_08613_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 3.4e-46 189.1 212 55.7
AUR62028601 Chenopodium quinoa HOM05D004016 ORTHO05D004732 1.7e-45 186.8 217 55.3
Lj1C48T4 Lonicera japonica HOM05D004016 ORTHO05D004732 2.9e-45 186.0 211 56.4
Rhsim01G0273500 Rhododendron simsii HOM05D004016 ORTHO05D004732 2.9e-45 186.0 223 57.0
Sed0007164 Sechium edule HOM05D004016 ORTHO05D004732 3.8e-45 185.7 219 55.7
Aa31LG5G2350 Aethionema arabicum HOM05D004016 ORTHO05D004732 5.0e-45 185.3 214 52.8
Glyma.02G146200 Glycine max HOM05D004016 ORTHO05D004732 5.0e-45 185.3 217 55.3
VMungo1383G1854 Vigna mungo HOM05D004016 ORTHO05D004732 5.0e-45 185.3 213 53.5
Phvul.001G153100 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 8.5e-45 184.5 213 53.5
Eucgr.H01463 Eucalyptus grandis HOM05D004016 ORTHO05D004732 1.1e-44 184.1 218 56.0
Lj1g0004863 Lotus japonicus HOM05D004016 ORTHO05D004732 1.4e-44 183.7 209 52.6
LjContig00056g0010505 Lotus japonicus HOM05D004016 ORTHO05D004732 1.4e-44 183.7 209 52.6
Solyc09g065380.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 1.4e-44 183.7 220 54.5
Sopen09g027150 Solanum pennellii HOM05D004016 ORTHO05D004732 1.4e-44 183.7 220 54.5
Migut.D00318 Erythranthe guttata HOM05D004016 ORTHO05D004732 5.5e-44 181.8 225 55.1
Nitab4.5_0002928g0010 Nicotiana tabacum HOM05D004016 ORTHO05D004732 5.5e-44 181.8 210 53.3
PGSC0003DMG400019358 Solanum tuberosum HOM05D004016 ORTHO05D004732 9.4e-44 181.0 219 53.4
Phvul.007G173300 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 2.3e-42 176.4 213 54.5
Lj5g0005099 Lotus japonicus HOM05D004016 ORTHO05D004732 3.0e-42 176.0 220 50.9
CiPaw.08G107200 Carya illinoinensis HOM05D004016 ORTHO05D004732 8.8e-42 174.5 181 55.8
Glyma.10G027800 Glycine max HOM05D004016 ORTHO05D004732 8.8e-42 174.5 220 54.5
Glyma.19G157800 Glycine max HOM05D004016 ORTHO05D004732 1.1e-41 174.1 214 53.3
Gorai.009G456000 Gossypium raimondii HOM05D004016 ORTHO05D004732 2.0e-41 173.3 131 74.0
Glyma.03G155700 Glycine max HOM05D004016 ORTHO05D004732 2.6e-41 172.9 215 53.0
Oeu040656.1 Olea europaea HOM05D004016 ORTHO05D004732 5.7e-41 171.8 222 52.3
AT4G02715 Arabidopsis thaliana HOM05D004016 ORTHO05D004732 1.7e-40 170.2 210 51.9
Oeu025739.1 Olea europaea HOM05D004016 ORTHO05D004732 1.7e-40 170.2 226 52.2
Peaxi162Scf00783g00017 Petunia axillaris HOM05D004016 ORTHO05D004732 1.7e-40 170.2 227 50.2
PGR044G0005 Punica granatum HOM05D004016 ORTHO05D004732 1.7e-40 170.2 225 52.0
Sp6g02620 Schrenkiella parvula HOM05D004016 ORTHO05D004732 1.7e-40 170.2 219 50.7
CAN.G1549.11 Capsicum annuum HOM05D004016 ORTHO05D004732 2.2e-40 169.9 221 51.1
CAN.G1549.22 Capsicum annuum HOM05D004016 ORTHO05D004732 2.2e-40 169.9 221 51.6
Thhalv10028968m.g Eutrema salsugineum HOM05D004016 ORTHO05D004732 4.8e-40 168.7 213 51.2
Psat3g063280 Pisum sativum HOM05D004016 ORTHO05D004732 4.8e-40 168.7 217 51.6
Hund02825 Selenicereus undatus HOM05D004016 ORTHO05D004732 4.8e-40 168.7 219 51.1
Sc17g0001350 Simmondsia chinensis HOM05D004016 ORTHO05D004732 8.2e-40 167.9 213 49.3
CARHR251020 Cardamine hirsuta HOM05D004016 ORTHO05D004732 1.1e-39 167.5 221 48.4
Migut.N02038 Erythranthe guttata HOM05D004016 ORTHO05D004732 1.4e-39 167.2 223 50.7
Psat6g059840 Pisum sativum HOM05D004016 ORTHO05D004732 1.4e-39 167.2 202 52.0
Carub.0006s3440 Capsella rubella HOM05D004016 ORTHO05D004732 1.8e-39 166.8 208 51.9
Hund27940 Selenicereus undatus HOM05D004016 ORTHO05D004732 1.8e-39 166.8 217 50.2
MSTRG.17454 Avicennia marina HOM05D004016 ORTHO05D004732 2.4e-39 166.4 222 51.4
Lsat_1_v5_gn_8_56660 Lactuca sativa HOM05D004016 ORTHO05D004732 3.1e-39 166.0 233 51.5
AL6G50300 Arabidopsis lyrata HOM05D004016 ORTHO05D004732 1.2e-38 164.1 213 49.3
Oeu028065.1 Olea europaea HOM05D004016 ORTHO05D004732 1.6e-38 163.7 231 50.2
CAN.G1549.21 Capsicum annuum HOM05D004016 ORTHO05D004732 3.5e-38 162.5 221 50.2
Medtr7g095160 Medicago truncatula HOM05D004016 ORTHO05D004732 7.7e-38 161.4 215 50.7
TPR.G27140 Trifolium pratense HOM05D004016 ORTHO05D004732 7.7e-38 161.4 212 49.1
BcaB01g02015 Brassica carinata HOM05D004016 ORTHO05D004732 5.0e-37 158.7 214 50.9
Nitab4.5_0009529g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 6.5e-37 158.3 187 52.9
VMungo0720G0880 Vigna mungo HOM05D004016 ORTHO05D004732 8.5e-37 157.9 199 53.3
SGA_v2.0_scaffold138G35322 Striga asiatica HOM05D004016 ORTHO05D004732 1.1e-36 157.5 239 46.4
HanXRQChr04g0118991 Helianthus annuus HOM05D004016 ORTHO05D004732 1.5e-36 157.1 231 48.5
Nitab4.5_0005172g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 1.5e-36 157.1 215 52.1
Peaxi162Scf01248g00010 Petunia axillaris HOM05D004016 ORTHO05D004732 1.5e-36 157.1 208 51.4
Aqoxy5G00450 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 4.2e-36 155.6 217 51.2
Actinidia24906 Actinidia chinensis HOM05D004016 ORTHO05D004732 7.2e-36 154.8 212 47.6
BcaB05g23659 Brassica carinata HOM05D004016 ORTHO05D004732 7.2e-36 154.8 212 48.1
ClCG09G007200 Citrullus lanatus HOM05D004016 ORTHO05D004732 7.2e-36 154.8 210 48.6
QL12p021105 Quercus lobata HOM05D004016 ORTHO05D004732 1.6e-35 153.7 238 50.0
Nitab4.5_0008064g0020 Nicotiana tabacum HOM05D004016 ORTHO05D004732 3.6e-35 152.5 215 52.1
DCAR_002723 Daucus carota HOM05D004016 ORTHO05D004732 8.8e-34 147.9 225 47.6
Solyc06g084200.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 8.8e-34 147.9 230 44.8
DCAR_018429 Daucus carota HOM05D004016 ORTHO05D004732 1.5e-33 147.1 242 45.0
Sopen06g035580 Solanum pennellii HOM05D004016 ORTHO05D004732 7.5e-33 144.8 218 45.0
TPR.G24294 Trifolium pratense HOM05D004016 ORTHO05D004732 7.5e-33 144.8 226 45.6
BcaC04g24008 Brassica carinata HOM05D004016 ORTHO05D004732 1.7e-32 143.7 213 46.9
BolC9t53149H Brassica oleracea HOM05D004016 ORTHO05D004732 1.7e-32 143.7 213 46.9
C09p02200 Brassica napus HOM05D004016 ORTHO05D004732 4.8e-32 142.1 211 47.4
SGA_v2.0_scaffold1G00497 Striga asiatica HOM05D004016 ORTHO05D004732 4.8e-32 142.1 256 44.1
Aqoxy2G03410 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 2.4e-31 139.8 211 46.4
PGSC0003DMG400020056 Solanum tuberosum HOM05D004016 ORTHO05D004732 3.1e-31 139.4 215 44.2
MELO3C015815.2 Cucumis melo HOM05D004016 ORTHO05D004732 2.7e-30 136.3 208 45.2
vmacro02591 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 5.9e-30 135.2 224 46.9
CsaV3_7G027970 Cucumis sativus L. HOM05D004016 ORTHO05D004732 1.0e-29 134.4 208 43.3
BcaC03g16166 Brassica carinata HOM05D004016 ORTHO05D004732 2.2e-29 133.3 208 44.7
C02p39140 Brassica napus HOM05D004016 ORTHO05D004732 8.5e-29 131.3 209 43.5
PSO761G0274 Papaver somniferum HOM05D004016 ORTHO05D004732 1.1e-28 131.0 228 48.7
Medtr1g071810 Medicago truncatula HOM05D004016 ORTHO05D004732 9.4e-28 127.9 306 35.0
Rhsim13G0026600 Rhododendron simsii HOM05D004016 ORTHO05D004732 1.6e-27 127.1 229 44.5
Psat1g067520 Pisum sativum HOM05D004016 ORTHO05D004732 3.0e-26 122.9 190 45.3
ECA236G1435 Erigeron canadensis HOM05D004016 ORTHO05D004732 6.8e-26 121.7 219 42.5
BolC2t09924H Brassica oleracea HOM05D004016 ORTHO05D004732 1.5e-25 120.6 200 43.0
A09p02110 Brassica napus HOM05D004016 ORTHO05D004732 3.4e-25 119.4 212 43.9
HPP92_013967 Vanilla planifolia HOM05D004016 ORTHO05D004732 2.2e-24 116.7 210 41.0
BraA09t35860Z Brassica rapa HOM05D004016 ORTHO05D004732 1.4e-23 114.0 210 41.9
PSO210G5515 Papaver somniferum HOM05D004016 ORTHO05D004732 4.1e-23 112.5 228 44.3
ATR0697G155 Amborella trichopoda HOM05D004016 ORTHO05D004732 5.9e-22 108.6 279 34.1
Gorai.009G455700 Gossypium raimondii HOM05D004016 ORTHO05D004732 5.0e-21 105.5 130 53.8
Oeu034146.1 Olea europaea HOM05D004016 ORTHO05D004732 5.0e-21 105.5 190 44.2
ECA247G1708 Erigeron canadensis HOM05D004016 ORTHO05D004732 6.5e-21 105.1 210 40.0
Sed0001131 Sechium edule HOM05D004016 ORTHO05D004732 1.9e-20 103.6 219 40.2
Os03g0160200 Oryza sativa ssp. japonica HOM05D004016 ORTHO05D004732 2.5e-20 103.2 220 39.5
unitig_0.g129 Utricularia gibba HOM05D004016 ORTHO05D004732 2.5e-20 103.2 162 46.3
Oeu013891.1 Olea europaea HOM05D004016 ORTHO05D004732 4.2e-20 102.4 176 45.5
Zm00001eb047890 Zea mays HOM05D004016 ORTHO05D004732 2.6e-17 93.2 173 42.2
A03p30890 Brassica napus HOM05D004016 ORTHO05D004732 5.7e-17 92.0 87 57.5
Zm00001eb403300 Zea mays HOM05D004016 ORTHO05D004732 1.3e-16 90.9 220 38.2
A02p24930 Brassica napus HOM05D004016 ORTHO05D004732 6.3e-16 88.6 202 37.6
BraA02t07483Z Brassica rapa HOM05D004016 ORTHO05D004732 1.1e-15 87.8 202 37.6
SEGI_39625 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 5.0e-13 79.0 123 44.7
GSVIVG01001172001 Vitis vinifera HOM05D004016 ORTHO05D004732 1.1e-12 77.8 156 37.2
Nn4g22231 Nelumbo nucifera HOM05D004016 ORTHO05D004732 3.3e-12 76.3 69 63.8
BcaC01g06738 Brassica carinata HOM05D004016 ORTHO05D004732 1.2e-11 74.3 53 64.2
BcaC01g06736 Brassica carinata HOM05D002144 ORTHO05D002170 3.6e-11 72.8 83 51.8
VMungo1383G2032 Vigna mungo HOM05D004016 ORTHO05D004732 8.0e-11 71.6 115 46.1
TWI75G1401 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 2.6e-09 66.6 46 76.1
Mapoly0128s0012 Marchantia polymorpha HOM05D004016 ORTHO05D004732 1.4e-07 60.8 95 50.5
SMO134G0037 Selaginella moellendorffii HOM05D004016 ORTHO05D004732 1.2e-06 57.8 126 41.3
SMO347G0037 Selaginella moellendorffii HOM05D004016 ORTHO05D004732 2.7e-06 56.6 88 40.9


User provided reference genes

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