Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_08819 Corchorus olitorius HOM05D001076 ORTHO05D001603 1.4e-30 135.6 68 100.0
Duzib187G1973 Durio zibethinus HOM05D001076 ORTHO05D001603 3.2e-22 107.8 65 83.1
Duzib147G0727 Durio zibethinus HOM05D001076 ORTHO05D001603 5.5e-22 107.1 67 79.1
Thecc.01G013200 Theobroma cacao HOM05D001076 ORTHO05D001603 6.1e-21 103.6 66 77.3
COL.COLO4_22480 Corchorus olitorius HOM05D001076 ORTHO05D001603 1.0e-20 102.8 53 92.5
Duzib264G0858 Durio zibethinus HOM05D001076 ORTHO05D001603 4.4e-19 97.4 65 76.9
Gohir.A11G172800 Gossypium hirsutum HOM05D001076 ORTHO05D001603 1.6e-16 89.0 66 69.7
Gohir.A02G173300 Gossypium hirsutum HOM05D001076 ORTHO05D001603 8.5e-15 83.2 62 67.7
Gohir.D03G006600 Gossypium hirsutum HOM05D001076 ORTHO05D001603 8.5e-15 83.2 62 67.7
Gorai.003G006900 Gossypium raimondii HOM05D001076 ORTHO05D001603 8.5e-15 83.2 62 67.7
Gohir.A11G041200 Gossypium hirsutum HOM05D001076 ORTHO05D001603 3.2e-14 81.3 69 62.3
Gohir.D11G044500 Gossypium hirsutum HOM05D001076 ORTHO05D001603 3.2e-14 81.3 69 62.3
Gohir.D11G179600 Gossypium hirsutum HOM05D001076 ORTHO05D001603 3.2e-14 81.3 66 65.2
Gorai.007G047800 Gossypium raimondii HOM05D001076 ORTHO05D001603 3.2e-14 81.3 69 62.3
Gorai.007G191700 Gossypium raimondii HOM05D001076 ORTHO05D001603 3.2e-14 81.3 66 65.2
GSVIVG01006333001 Vitis vinifera HOM05D001076 ORTHO05D001603 9.4e-14 79.7 63 66.7
Manes.02G109100 Manihot esculenta HOM05D001076 ORTHO05D001603 2.1e-13 78.6 66 60.6
CiPaw.08G127500 Carya illinoinensis HOM05D001076 ORTHO05D001603 8.0e-13 76.6 65 64.6
MD15G1240700 Malus domestica HOM05D001076 ORTHO05D001603 1.0e-12 76.3 57 66.7
Gorai.003G006800 Gossypium raimondii HOM05D001076 ORTHO05D001603 1.8e-12 75.5 63 66.7
CANSAT01G3132 Cannabis sativa HOM05D001076 ORTHO05D001603 2.3e-12 75.1 69 59.4
RcHm_v2.0_Chr2g0098711 Rosa chinensis HOM05D001076 ORTHO05D001603 2.3e-12 75.1 62 66.1
FAN26G0382 Fragaria x ananassa HOM05D001076 ORTHO05D001603 6.8e-12 73.6 62 62.9
FAN28G0595 Fragaria x ananassa HOM05D001076 ORTHO05D001603 6.8e-12 73.6 62 62.9
MD02G1125000 Malus domestica HOM05D001076 ORTHO05D001603 6.8e-12 73.6 57 64.9
Cc07_g11180 Coffea canephora HOM05D001076 ORTHO05D001603 1.5e-11 72.4 64 60.9
FAN19G0158 Fragaria x ananassa HOM05D001076 ORTHO05D001603 3.4e-11 71.2 62 64.5
FAN23G2699 Fragaria x ananassa HOM05D001076 ORTHO05D001603 3.4e-11 71.2 62 61.3
Prupe.7G173400 Prunus persica HOM05D001076 ORTHO05D001603 3.4e-11 71.2 57 63.2
FvH4_1g11260 Fragaria vesca HOM05D001076 ORTHO05D001603 4.4e-11 70.9 62 64.5
Dinv08560 Davidia involucrata HOM05D001076 ORTHO05D001603 5.7e-11 70.5 67 59.7
TWI53G0756 Tripterygium wilfordii HOM05D001076 ORTHO05D001603 1.3e-10 69.3 61 65.6
CiPaw.07G061900 Carya illinoinensis HOM05D001076 ORTHO05D001603 1.7e-10 68.9 67 56.7
Gohir.A02G173400 Gossypium hirsutum HOM05D001076 ORTHO05D001603 1.7e-10 68.9 55 69.1
GSVIVG01009971001 Vitis vinifera HOM05D001076 ORTHO05D001603 2.2e-10 68.6 55 61.8
THA.LOC104807509 Tarenaya hassleriana HOM05D001076 ORTHO05D001603 2.8e-10 68.2 58 62.1
QL06p051361 Quercus lobata HOM05D001076 ORTHO05D001603 3.7e-10 67.8 54 68.5
THA.LOC104819738 Tarenaya hassleriana HOM05D001076 ORTHO05D001603 3.7e-10 67.8 59 57.6
Duzib116G0334 Durio zibethinus HOM05D001076 ORTHO05D001603 1.1e-09 66.2 43 74.4
FAN20G0221 Fragaria x ananassa HOM05D001076 ORTHO05D001603 1.1e-09 66.2 51 68.6
BcaB03g12431 Brassica carinata HOM05D001076 ORTHO05D001603 1.4e-09 65.9 62 58.1
Duzib093G0045 Durio zibethinus HOM05D001076 ORTHO05D001603 1.8e-09 65.5 50 70.0
TWI73G0370 Tripterygium wilfordii HOM05D001076 ORTHO05D001603 1.8e-09 65.5 60 61.7
Solyc02g061980.3 Solanum lycopersicum HOM05D001076 ORTHO05D001603 2.4e-09 65.1 53 58.5
Sopen02g012940 Solanum pennellii HOM05D001076 ORTHO05D001603 2.4e-09 65.1 53 58.5
MELO3C007933.2 Cucumis melo HOM05D001076 ORTHO05D001603 3.1e-09 64.7 67 53.7
Nn6g31956 Nelumbo nucifera HOM05D001076 ORTHO05D001603 3.1e-09 64.7 64 56.2
FAN15G2372 Fragaria x ananassa HOM05D001076 ORTHO05D001603 4.1e-09 64.3 51 66.7
FAN27G0608 Fragaria x ananassa HOM05D001076 ORTHO05D001603 4.1e-09 64.3 51 66.7
Cfa007017 Carpinus fangiana HOM05D001076 ORTHO05D001603 5.4e-09 63.9 66 60.6
Nitab4.5_0002337g0160 Nicotiana tabacum HOM05D001076 ORTHO05D001603 5.4e-09 63.9 65 58.5
MSTRG.15584 Avicennia marina HOM05D001076 ORTHO05D001603 7.0e-09 63.5 66 60.6
CSS0013209 Camellia sinensis var. sinensis HOM05D001076 ORTHO05D001603 7.0e-09 63.5 65 55.4
Haze_03714 Corylus avellana HOM05D001076 ORTHO05D001603 7.0e-09 63.5 66 59.1
Nitab4.5_0002337g0100 Nicotiana tabacum HOM05D001076 ORTHO05D001603 7.0e-09 63.5 64 57.8
COL.COLO4_26105 Corchorus olitorius HOM05D001076 ORTHO05D001603 9.1e-09 63.2 41 73.2
Cpa.g.sc26.285 Carica papaya HOM05D001076 ORTHO05D001603 1.2e-08 62.8 42 71.4
CsaV3_6G047420 Cucumis sativus L. HOM05D001076 ORTHO05D001603 1.2e-08 62.8 51 60.8
FvH4_2g38070 Fragaria vesca HOM05D001076 ORTHO05D001603 1.2e-08 62.8 51 64.7
Nn5g30805 Nelumbo nucifera HOM05D001076 ORTHO05D001603 1.2e-08 62.8 66 54.5
Thecc.08G049100 Theobroma cacao HOM05D001076 ORTHO05D001603 1.2e-08 62.8 43 69.8
CSS0032713 Camellia sinensis var. sinensis HOM05D001076 ORTHO05D001603 1.6e-08 62.4 66 54.5
CDE09G0323 Ceratophyllum demersum HOM05D001076 ORTHO05D001603 1.6e-08 62.4 49 61.2
Ciclev10025634m.g Citrus clementina HOM05D001076 ORTHO05D001603 1.6e-08 62.4 66 60.6
CARHR244280 Cardamine hirsuta HOM05D001076 ORTHO05D001603 2.0e-08 62.0 60 51.7
TPR.G26377 Trifolium pratense HOM05D001076 ORTHO05D001603 2.0e-08 62.0 57 56.1
TAR376G0483 Trochodendron aralioides HOM05D001076 ORTHO05D001603 2.0e-08 62.0 58 55.2
Aa31LG6G12840 Aethionema arabicum HOM05D001076 ORTHO05D001603 2.7e-08 61.6 66 53.0
CAN.G576.3 Capsicum annuum HOM05D001076 ORTHO05D001603 2.7e-08 61.6 65 55.4
Cpa.g.sc6.300 Carica papaya HOM05D001076 ORTHO05D001603 2.7e-08 61.6 58 67.2
THA.LOC104819169 Tarenaya hassleriana HOM05D001076 ORTHO05D001603 2.7e-08 61.6 52 65.4
BcaC01g00526 Brassica carinata HOM05D001076 ORTHO05D001603 3.5e-08 61.2 55 56.4
C03p80960 Brassica napus HOM05D001076 ORTHO05D001603 3.5e-08 61.2 55 56.4
BolC3t20355H Brassica oleracea HOM05D001076 ORTHO05D001603 3.5e-08 61.2 55 56.4
Ca_24935_v3 Cicer arietinum L. HOM05D001076 ORTHO05D001603 3.5e-08 61.2 65 55.4
Gohir.D01G096400 Gossypium hirsutum HOM05D001076 ORTHO05D001603 3.5e-08 61.2 58 58.6
Atru.chr13.243 Acer truncatum HOM05D001076 ORTHO05D001603 4.5e-08 60.8 58 58.6
Cfa013990 Carpinus fangiana HOM05D001076 ORTHO05D001603 4.5e-08 60.8 59 57.6
Haze_22677 Corylus avellana HOM05D001076 ORTHO05D001603 4.5e-08 60.8 52 63.5
Gohir.A01G109600 Gossypium hirsutum HOM05D001076 ORTHO05D001603 4.5e-08 60.8 58 58.6
Gorai.002G121900 Gossypium raimondii HOM05D001076 ORTHO05D001603 4.5e-08 60.8 58 58.6
Nitab4.5_0000188g0170 Nicotiana tabacum HOM05D001076 ORTHO05D001603 5.9e-08 60.5 67 53.7
Potri.005G109400 Populus trichocarpa HOM05D001076 ORTHO05D001603 5.9e-08 60.5 74 56.8
Solyc02g061960.3 Solanum lycopersicum HOM05D001076 ORTHO05D001603 5.9e-08 60.5 54 57.4
A08p21620 Brassica napus HOM05D001076 ORTHO05D001603 7.7e-08 60.1 55 56.4
BraA08t34109Z Brassica rapa HOM05D001076 ORTHO05D001603 7.7e-08 60.1 55 56.4
Hma1.2p1_0315F.1_g122430 Hydrangea macrophylla HOM05D001076 ORTHO05D001603 7.7e-08 60.1 52 63.5
AL7G15160 Arabidopsis lyrata HOM05D001076 ORTHO05D001603 1.0e-07 59.7 56 53.6
MELO3C007932.2 Cucumis melo HOM05D001076 ORTHO05D001603 1.0e-07 59.7 59 55.9
Nitab4.5_0000188g0180 Nicotiana tabacum HOM05D001076 ORTHO05D001603 1.0e-07 59.7 65 53.8
Lalb_Chr03g0033491 Lupinus albus HOM05D001076 ORTHO05D001603 1.3e-07 59.3 48 64.6
Sp7g33670 Schrenkiella parvula HOM05D001076 ORTHO05D001603 1.3e-07 59.3 55 54.5
TWI36G1177 Tripterygium wilfordii HOM05D001076 ORTHO05D001603 1.3e-07 59.3 54 57.4
ClCG01G020520 Citrullus lanatus HOM05D001076 ORTHO05D001603 1.7e-07 58.9 59 55.9
Aqoxy6G02124 Aquilegia oxysepala HOM05D001076 ORTHO05D001603 2.3e-07 58.5 50 62.0
CsaV3_6G047400 Cucumis sativus L. HOM05D001076 ORTHO05D001603 2.3e-07 58.5 59 55.9
Lj4C223T13 Lonicera japonica HOM05D001076 ORTHO05D001603 2.3e-07 58.5 69 55.1
Atru.chr3.882 Acer truncatum HOM05D001076 ORTHO05D001603 2.9e-07 58.2 74 50.0
Atru.chr3.893 Acer truncatum HOM05D001076 ORTHO05D001603 2.9e-07 58.2 74 50.0
Actinidia28723 Actinidia chinensis HOM05D001076 ORTHO05D001603 2.9e-07 58.2 54 53.7
Sed0002729 Sechium edule HOM05D001076 ORTHO05D001603 2.9e-07 58.2 71 49.3
SalBow5G2858 Salvia bowleyana HOM05D001076 ORTHO05D001603 3.8e-07 57.8 61 57.4
Sopen02g012920 Solanum pennellii HOM05D001076 ORTHO05D001603 3.8e-07 57.8 54 55.6
Aa31LG1G14580 Aethionema arabicum HOM05D001076 ORTHO05D001603 5.0e-07 57.4 53 58.5
AT4G35890 Arabidopsis thaliana HOM05D001076 ORTHO05D001603 5.0e-07 57.4 57 50.9
Oeu039729.1 Olea europaea HOM05D001076 ORTHO05D001603 5.0e-07 57.4 54 63.0
Ciclev10000767m.g Citrus clementina HOM05D001076 ORTHO05D001603 6.6e-07 57.0 64 56.2
RcHm_v2.0_Chr6g0303491 Rosa chinensis HOM05D001076 ORTHO05D001603 6.6e-07 57.0 52 59.6
Sabra05G0089600 Salix brachista HOM05D001076 ORTHO05D001603 6.6e-07 57.0 65 58.5
TAR625G1154 Trochodendron aralioides HOM05D001076 ORTHO05D001603 6.6e-07 57.0 65 52.3
TAR628G0873 Trochodendron aralioides HOM05D001076 ORTHO05D001603 6.6e-07 57.0 68 51.5
Lsat_1_v5_gn_4_144940 Lactuca sativa HOM05D001076 ORTHO05D001603 8.6e-07 56.6 59 49.2
Sp2g30590 Schrenkiella parvula HOM05D001076 ORTHO05D001603 8.6e-07 56.6 51 56.9
BcaNung00785 Brassica carinata HOM05D001112 ORTHO05D000996 1.1e-06 56.2 66 50.0
BolC1t00300H Brassica oleracea HOM05D001076 ORTHO05D001603 1.1e-06 56.2 66 50.0
Thhalv10024905m.g Eutrema salsugineum HOM05D001076 ORTHO05D001603 1.1e-06 56.2 56 50.0
Lj1g0020044 Lotus japonicus HOM05D001076 ORTHO05D001603 1.1e-06 56.2 53 54.7
Lj5g0020448 Lotus japonicus HOM05D001076 ORTHO05D001603 1.1e-06 56.2 57 52.6
Nitab4.5_0008247g0010 Nicotiana tabacum HOM05D001076 ORTHO05D001603 1.1e-06 56.2 66 53.0
TWI56G0858 Tripterygium wilfordii HOM05D001076 ORTHO05D001603 1.1e-06 56.2 55 63.6
VMungo0251G2345 Vigna mungo HOM05D001076 ORTHO05D001603 1.1e-06 56.2 60 56.7
Actinidia02366 Actinidia chinensis HOM05D001076 ORTHO05D001603 1.5e-06 55.8 62 59.7
ATR0994G004 Amborella trichopoda HOM05D001076 ORTHO05D001603 1.5e-06 55.8 66 43.9
CSS0031735 Camellia sinensis var. sinensis HOM05D001076 ORTHO05D001603 1.5e-06 55.8 51 56.9
CSS0035951 Camellia sinensis var. sinensis HOM05D001076 ORTHO05D001603 1.5e-06 55.8 51 56.9
CAN.G576.6 Capsicum annuum HOM05D001076 ORTHO05D001603 1.5e-06 55.8 45 60.0
CARHR281650 Cardamine hirsuta HOM05D001076 ORTHO05D001603 1.5e-06 55.8 50 64.0
Glyma.04G021900 Glycine max HOM05D001076 ORTHO05D001603 1.5e-06 55.8 54 53.7
MBI08_g12328_MAGBIO Magnolia biondii HOM05D001076 ORTHO05D001603 1.5e-06 55.8 50 62.0
SalBow5G1953 Salvia bowleyana HOM05D001076 ORTHO05D001603 1.5e-06 55.8 65 52.3
C01p03150 Brassica napus HOM05D001076 ORTHO05D001603 1.9e-06 55.5 66 50.0
C07p61390 Brassica napus HOM05D001076 ORTHO05D001603 1.9e-06 55.5 60 51.7
BolC7t46565H Brassica oleracea HOM05D001076 ORTHO05D001603 1.9e-06 55.5 60 51.7
CsaV3_3G046030 Cucumis sativus L. HOM05D001076 ORTHO05D001603 1.9e-06 55.5 52 57.7
Glyma.06G022100 Glycine max HOM05D001076 ORTHO05D001603 1.9e-06 55.5 54 53.7
TPR.G25128 Trifolium pratense HOM05D001076 ORTHO05D001603 1.9e-06 55.5 67 56.7
Medtr5g022790 Medicago truncatula HOM05D001076 ORTHO05D001603 2.5e-06 55.1 68 51.5
PGR102G2311 Punica granatum HOM05D001076 ORTHO05D001603 2.5e-06 55.1 64 48.4
VMungo0647G2282 Vigna mungo HOM05D001076 ORTHO05D001603 2.5e-06 55.1 58 51.7
CiPaw.07G145200 Carya illinoinensis HOM05D001076 ORTHO05D001603 3.3e-06 54.7 59 55.9
Cc10_g01320 Coffea canephora HOM05D001076 ORTHO05D001603 3.3e-06 54.7 63 54.0
MELO3C003736.2 Cucumis melo HOM05D001076 ORTHO05D001603 3.3e-06 54.7 42 64.3
Actinidia35668 Actinidia chinensis HOM05D001076 ORTHO05D001603 4.2e-06 54.3 55 50.9
ClCG05G015530 Citrullus lanatus HOM05D001076 ORTHO05D001603 4.2e-06 54.3 48 62.5
Eucgr.I02318 Eucalyptus grandis HOM05D001076 ORTHO05D001603 4.2e-06 54.3 64 53.1
MD15G1008200 Malus domestica HOM05D001076 ORTHO05D001603 4.2e-06 54.3 53 60.4
Phvul.009G018800 Phaseolus vulgaris HOM05D001076 ORTHO05D001603 4.2e-06 54.3 51 51.0
HPP92_015016 Vanilla planifolia HOM05D001076 ORTHO05D001603 4.2e-06 54.3 58 56.9
Sed0025993 Sechium edule HOM05D001076 ORTHO05D001603 5.5e-06 53.9 70 51.4
Dinv31880 Davidia involucrata HOM05D001076 ORTHO05D001603 7.2e-06 53.5 52 61.5
Nitab4.5_0008954g0030 Nicotiana tabacum HOM05D001076 ORTHO05D001603 7.2e-06 53.5 66 51.5
Oeu051160.1 Olea europaea HOM05D001076 ORTHO05D001603 7.2e-06 53.5 64 56.2
QL02p012478 Quercus lobata HOM05D001076 ORTHO05D001603 9.5e-06 53.1 59 54.2
Rhsim08G0031300 Rhododendron simsii HOM05D001076 ORTHO05D001603 9.5e-06 53.1 54 51.9


User provided reference genes

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