Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_08566 Corchorus olitorius HOM05D005242 ORTHO05D006778 1.1e-217 760.4 602 100.0
Duzib041G0461 Durio zibethinus HOM05D005242 ORTHO05D006778 1.8e-103 380.9 613 59.2
Thecc.08G153500 Theobroma cacao HOM05D005242 ORTHO05D006778 2.0e-67 261.2 152 88.8
Gorai.009G254600 Gossypium raimondii HOM05D005242 ORTHO05D006778 4.0e-63 246.9 170 75.9
Gohir.A05G243801 Gossypium hirsutum HOM05D005242 ORTHO05D006778 4.4e-62 243.4 155 80.0
Aa31LG4G6850 Aethionema arabicum HOM05D005242 ORTHO05D006778 2.3e-50 204.5 144 66.7
Haze_17757 Corylus avellana HOM05D005242 ORTHO05D006778 3.6e-48 197.2 144 67.4
QL02p039039 Quercus lobata HOM05D005242 ORTHO05D006778 3.6e-48 197.2 144 68.8
BraA02t07120Z Brassica rapa HOM05D005242 ORTHO05D018625 5.2e-47 193.4 144 61.8
Atru.chr13.2099 Acer truncatum HOM05D005242 ORTHO05D006778 1.2e-46 192.2 144 65.3
AT1G76780 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 1.2e-46 192.2 139 64.0
CARHR070310 Cardamine hirsuta HOM05D005242 ORTHO05D006778 2.0e-46 191.4 143 62.2
Cfa018319 Carpinus fangiana HOM05D005242 ORTHO05D006778 3.4e-46 190.7 144 65.3
MD10G1026100 Malus domestica HOM05D005242 ORTHO05D006778 4.4e-46 190.3 154 62.3
arahy.Tifrunner.gnm1.ann1.661UAU Arachis hypogaea HOM05D005242 ORTHO05D006778 9.8e-46 189.1 144 63.9
A02p20890 Brassica napus HOM05D005242 ORTHO05D018625 1.7e-45 188.3 153 58.8
arahy.Tifrunner.gnm1.ann1.3DXP20 Arachis hypogaea HOM05D005242 ORTHO05D006778 2.8e-45 187.6 144 63.9
THA.LOC104813717 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 2.8e-45 187.6 150 60.7
AL2G36920 Arabidopsis lyrata HOM05D005242 ORTHO05D006778 6.3e-45 186.4 151 57.6
Carub.0002s2368 Capsella rubella HOM05D005242 ORTHO05D006778 1.1e-44 185.7 139 61.9
MD05G1026800 Malus domestica HOM05D005242 ORTHO05D006778 1.1e-44 185.7 152 61.8
Manes.02G179900 Manihot esculenta HOM05D005242 ORTHO05D006778 1.4e-44 185.3 144 66.0
Potri.002G067700 Populus trichocarpa HOM05D005242 ORTHO05D006778 4.1e-44 183.7 144 63.9
AT1G76770 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 1.6e-43 181.8 142 61.3
Potri.005G192700 Populus trichocarpa HOM05D005242 ORTHO05D006778 2.0e-43 181.4 146 65.8
CiPaw.16G012200 Carya illinoinensis HOM05D005242 ORTHO05D006778 3.5e-43 180.6 144 62.5
CANSAT25G1562 Cannabis sativa HOM05D005242 ORTHO05D006778 4.5e-43 180.3 145 66.2
BraA02t07119Z Brassica rapa HOM05D005242 ORTHO05D006778 5.9e-43 179.9 150 54.7
Lalb_Chr19g0130231 Lupinus albus HOM05D005242 ORTHO05D006778 1.7e-42 178.3 142 62.7
TPR.G31185 Trifolium pratense HOM05D004559 ORTHO05D005283 2.3e-42 177.9 144 61.8
CSS0002508 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 2.9e-42 177.6 137 64.2
Ciclev10003945m.g Citrus clementina HOM05D005242 ORTHO05D006778 2.9e-42 177.6 145 64.1
Rhsim11G0083400 Rhododendron simsii HOM05D005242 ORTHO05D006778 2.9e-42 177.6 149 62.4
THA.LOC104812037 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 5.0e-42 176.8 144 59.0
Eucgr.F02701 Eucalyptus grandis HOM05D005242 ORTHO05D006778 6.6e-42 176.4 144 61.8
Lj2g0024086 Lotus japonicus HOM05D005242 ORTHO05D006778 6.6e-42 176.4 144 61.1
CSS0020035 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 8.6e-42 176.0 137 63.5
Dinv25870 Davidia involucrata HOM05D005242 ORTHO05D006778 8.6e-42 176.0 155 63.2
Glyma.02G081300 Glycine max HOM05D005242 ORTHO05D006778 2.5e-41 174.5 146 61.6
Glyma.16G166700 Glycine max HOM05D005242 ORTHO05D006778 2.5e-41 174.5 146 61.0
PGR042G2442 Punica granatum HOM05D005242 ORTHO05D006778 3.3e-41 174.1 142 63.4
A02p20880 Brassica napus HOM05D005242 ORTHO05D006778 4.3e-41 173.7 144 53.5
Cpa.g.sc21.205 Carica papaya HOM05D005242 ORTHO05D006778 7.3e-41 172.9 144 62.5
SalBow6G1825 Salvia bowleyana HOM05D005242 ORTHO05D006778 1.2e-40 172.2 149 61.1
Aqoxy5G02077 Aquilegia oxysepala HOM05D005242 ORTHO05D006778 1.6e-40 171.8 153 58.2
C02p32790 Brassica napus HOM05D005242 ORTHO05D006778 1.6e-40 171.8 144 53.5
BcaC03g15701 Brassica carinata HOM05D005242 ORTHO05D006778 2.1e-40 171.4 144 53.5
VMungo0464G2160 Vigna mungo HOM05D005242 ORTHO05D006778 2.1e-40 171.4 144 59.7
Psat1g101840 Pisum sativum HOM05D005242 ORTHO05D006778 2.8e-40 171.0 148 58.1
Nn5g28757 Nelumbo nucifera HOM05D005242 ORTHO05D006778 3.6e-40 170.6 144 61.8
Prupe.8G031300 Prunus persica HOM05D005242 ORTHO05D006778 4.7e-40 170.2 143 61.5
PSO447G0326 Papaver somniferum HOM05D005242 ORTHO05D006778 1.4e-39 168.7 155 57.4
Medtr1246s0010 Medicago truncatula HOM05D005242 ORTHO05D006778 1.8e-39 168.3 144 58.3
TWI60G0101 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 2.3e-39 167.9 144 60.4
arahy.Tifrunner.gnm1.ann1.H39N2I Arachis hypogaea HOM05D005242 ORTHO05D006778 3.0e-39 167.5 144 59.7
PSO210G0022 Papaver somniferum HOM05D005242 ORTHO05D006778 3.0e-39 167.5 158 56.3
vmacro01456 Vaccinium macrocarpon HOM05D005242 ORTHO05D006778 3.0e-39 167.5 146 58.9
arahy.Tifrunner.gnm1.ann1.BM3N3L Arachis hypogaea HOM05D005242 ORTHO05D006778 4.0e-39 167.2 144 59.7
DCAR_001139 Daucus carota HOM05D005242 ORTHO05D006778 6.8e-39 166.4 154 58.4
A07p42410 Brassica napus HOM05D005242 ORTHO05D006778 1.2e-38 165.6 140 55.0
Oeu011949.1 Olea europaea HOM05D005242 ORTHO05D006778 1.5e-38 165.2 143 60.1
BolC2t09420H Brassica oleracea HOM05D005242 ORTHO05D018625 3.4e-38 164.1 152 50.7
Peaxi162Scf00599g00049 Petunia axillaris HOM05D005242 ORTHO05D006778 7.5e-38 162.9 144 56.9
Medtr1g098690 Medicago truncatula HOM05D005242 ORTHO05D006778 1.3e-37 162.2 147 59.9
Psat6g192600 Pisum sativum HOM05D005242 ORTHO05D006778 1.3e-37 162.2 145 60.7
RcHm_v2.0_Chr6g0275301 Rosa chinensis HOM05D005242 ORTHO05D006778 1.3e-37 162.2 144 57.6
FAN24G0150 Fragaria x ananassa HOM05D005242 ORTHO05D006778 1.7e-37 161.8 143 55.2
BraA07t31767Z Brassica rapa HOM05D005242 ORTHO05D006778 2.9e-37 161.0 141 54.6
FAN27G0674 Fragaria x ananassa HOM05D005242 ORTHO05D006778 2.9e-37 161.0 143 55.9
FAN20G3127 Fragaria x ananassa HOM05D005242 ORTHO05D006778 4.9e-37 160.2 143 55.9
Lj5g0003985 Lotus japonicus HOM05D005242 ORTHO05D006778 6.4e-37 159.8 156 55.8
FAN15G2695 Fragaria x ananassa HOM05D005242 ORTHO05D006778 8.3e-37 159.5 159 52.2
SGA_v2.0_scaffold19G08682 Striga asiatica HOM05D001302 ORTHO05D001107 1.4e-36 158.7 138 58.7
Lalb_Chr21g0305491 Lupinus albus HOM05D005242 ORTHO05D006778 2.4e-36 157.9 145 57.9
Aa31LG4G6840 Aethionema arabicum HOM05D005242 ORTHO05D006778 3.2e-36 157.5 133 56.4
AUR62013591 Chenopodium quinoa HOM05D005242 ORTHO05D006778 4.1e-36 157.1 155 56.8
C06p50980 Brassica napus HOM05D005242 ORTHO05D006778 1.6e-35 155.2 135 54.1
GSVIVG01034538001 Vitis vinifera HOM05D005242 ORTHO05D006778 1.6e-35 155.2 144 56.2
AUR62026703 Chenopodium quinoa HOM05D005242 ORTHO05D006778 3.5e-35 154.1 155 57.4
BolC6t40122H Brassica oleracea HOM05D005242 ORTHO05D006778 7.8e-35 152.9 134 53.7
Cc10_g14420 Coffea canephora HOM05D005242 ORTHO05D006778 7.8e-35 152.9 154 54.5
Peaxi162Scf01294g00121 Petunia axillaris HOM05D005242 ORTHO05D006778 1.7e-34 151.8 144 54.2
BcaC03g15702 Brassica carinata HOM05D005242 ORTHO05D018625 2.3e-34 151.4 142 52.1
CAN.G268.26 Capsicum annuum HOM05D005242 ORTHO05D006778 3.0e-34 151.0 144 51.4
VMungo0720G2917 Vigna mungo HOM05D005242 ORTHO05D006778 3.9e-34 150.6 153 54.9
Glyma.10G224400 Glycine max HOM05D005242 ORTHO05D006778 6.6e-34 149.8 155 54.2
Nitab4.5_0010749g0010 Nicotiana tabacum HOM05D005242 ORTHO05D006778 1.1e-33 149.1 144 52.8
Sopen04g027460 Solanum pennellii HOM05D005242 ORTHO05D006778 1.5e-33 148.7 144 52.1
CiPaw.15G015900 Carya illinoinensis HOM05D005242 ORTHO05D006778 3.3e-33 147.5 144 52.8
PGSC0003DMG400024099 Solanum tuberosum HOM05D005242 ORTHO05D006778 4.3e-33 147.1 144 50.0
Nitab4.5_0001062g0060 Nicotiana tabacum HOM05D005242 ORTHO05D006778 7.3e-33 146.4 142 52.8
Solyc04g071490.3 Solanum lycopersicum HOM05D005242 ORTHO05D006778 7.3e-33 146.4 144 51.4
Glyma.20G167400 Glycine max HOM05D005242 ORTHO05D006778 2.3e-31 141.4 154 52.6
Actinidia29532 Actinidia chinensis HOM05D005242 ORTHO05D006778 3.1e-31 141.0 335 35.5
CSS0021128 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 3.1e-31 141.0 144 52.1
Phvul.007G080300 Phaseolus vulgaris HOM05D005242 ORTHO05D006778 5.2e-31 140.2 154 48.7
EL10Ac1g01555 Beta vulgaris HOM05D005242 ORTHO05D006778 1.2e-30 139.0 152 53.3
Sc26g0002570 Simmondsia chinensis HOM05D005242 ORTHO05D006778 4.4e-30 137.1 147 53.7
Actinidia17789 Actinidia chinensis HOM05D005242 ORTHO05D006778 5.8e-30 136.7 144 49.3
BcaB05g25009 Brassica carinata HOM05D005242 ORTHO05D006778 9.8e-30 136.0 144 50.0
Sabra05G0147300 Salix brachista HOM05D005242 ORTHO05D006778 8.3e-29 132.9 627 29.2
CDE02G4447 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 3.5e-27 127.5 144 47.9
Ca_27679_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 7.8e-27 126.3 104 57.7
ATR0820G162 Amborella trichopoda HOM05D005242 ORTHO05D006778 1.3e-26 125.6 145 47.6
DCAR_014441 Daucus carota HOM05D005242 ORTHO05D006778 5.0e-26 123.6 144 43.8
Sc02g0004040 Simmondsia chinensis HOM05D005242 ORTHO05D006778 6.6e-26 123.2 170 44.7
Hund17437 Selenicereus undatus HOM05D005242 ORTHO05D006778 3.3e-25 120.9 104 61.5
ClCG09G010170 Citrullus lanatus HOM05D005242 ORTHO05D006778 2.1e-24 118.2 145 49.0
Lsat_1_v5_gn_6_100581 Lactuca sativa HOM05D005242 ORTHO05D006778 1.1e-23 115.9 144 44.4
CAN.G18.12 Capsicum annuum HOM05D005242 ORTHO05D006778 2.3e-23 114.8 143 43.4
CDE08G0940 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 3.1e-23 114.4 114 50.9
Migut.N03213 Erythranthe guttata HOM05D005242 ORTHO05D006778 3.1e-23 114.4 150 47.3
HanXRQChr05g0161961 Helianthus annuus HOM05D005242 ORTHO05D006778 4.0e-23 114.0 146 40.4
unitig_52.g17530 Utricularia gibba HOM05D005242 ORTHO05D006778 1.2e-22 112.5 179 36.9
Gohir.D05G244833 Gossypium hirsutum HOM05D005242 ORTHO05D006778 4.4e-22 110.5 352 44.0
Lsat_1_v5_gn_9_40940 Lactuca sativa HOM05D005242 ORTHO05D006778 1.7e-21 108.6 133 46.6
BcaC03g15700 Brassica carinata HOM05D005242 ORTHO05D006778 6.4e-21 106.7 107 49.5
Solyc12g056560.2 Solanum lycopersicum HOM05D005242 ORTHO05D006778 2.4e-20 104.8 130 40.0
Sopen12g029170 Solanum pennellii HOM05D005242 ORTHO05D006778 2.4e-20 104.8 130 40.0
PGSC0003DMG402010796 Solanum tuberosum HOM05D005242 ORTHO05D006778 1.2e-19 102.4 130 38.5
FvH4_2g13660 Fragaria vesca HOM05D005242 ORTHO05D006778 3.5e-19 100.9 94 53.2
TPR.G33911 Trifolium pratense HOM05D005786 ORTHO05D006946 6.0e-19 100.1 96 58.3
Nitab4.5_0002487g0010 Nicotiana tabacum HOM05D001302 ORTHO05D001107 2.8e-16 91.3 93 50.5
GSVIVG01034537001 Vitis vinifera HOM05D005242 ORTHO05D006778 2.4e-15 88.2 119 43.7
Carub.0002s2369 Capsella rubella HOM05D005242 ORTHO05D018625 6.8e-15 86.7 67 61.2
Nitab4.5_0004505g0020 Nicotiana tabacum HOM05D005242 ORTHO05D006778 1.2e-14 85.9 84 53.6
Sp5g31920 Schrenkiella parvula HOM05D005242 ORTHO05D006778 3.4e-14 84.3 69 56.5
Sed0006497 Sechium edule HOM05D005242 ORTHO05D006778 2.2e-13 81.6 100 49.0
TWI60G1058 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 3.2e-12 77.8 67 58.2
Phvul.004G094700 Phaseolus vulgaris HOM05D005242 ORTHO05D006778 7.8e-11 73.2 65 56.9
SEGI_03948 Sequoiadendron giganteum HOM05D005242 ORTHO05D000080 1.2e-08 65.9 135 31.9
MBI09_g45000_MAGBIO Magnolia biondii HOM05D005242 ORTHO05D006778 6.2e-08 63.5 73 46.6
Ca_10684_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 9.9e-06 56.2 60 58.3
SEGI_01966 Sequoiadendron giganteum HOM05D005242 ORTHO05D006778 9.9e-06 56.2 140 31.4


User provided reference genes

Program Settings