Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_08529 Corchorus olitorius HOM05D004620 ORTHO05D005999 7.0e-116 420.6 211 100.0
Thecc.04G229000 Theobroma cacao HOM05D004620 ORTHO05D005999 9.8e-110 400.2 211 94.3
Duzib151G0623 Durio zibethinus HOM05D004620 ORTHO05D005999 5.9e-107 391.0 212 92.9
Gohir.1Z049558 Gossypium hirsutum HOM05D004620 ORTHO05D005999 3.3e-97 358.6 203 91.6
Gohir.A02G031301 Gossypium hirsutum HOM05D004620 ORTHO05D005999 3.3e-97 358.6 203 91.6
Gorai.005G042000 Gossypium raimondii HOM05D004620 ORTHO05D005999 7.3e-97 357.5 203 91.1
Gohir.D02G038100 Gossypium hirsutum HOM05D004620 ORTHO05D005999 3.6e-96 355.1 203 90.1
CSS0028157 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 1.5e-94 349.7 213 84.0
Potri.008G151600 Populus trichocarpa HOM05D004620 ORTHO05D005999 2.6e-94 349.0 211 83.9
CiPaw.01G164700 Carya illinoinensis HOM05D004620 ORTHO05D005999 3.4e-94 348.6 216 84.7
PGR004G0890 Punica granatum HOM05D004620 ORTHO05D005999 1.7e-93 346.3 211 84.4
Nn1g02273 Nelumbo nucifera HOM05D004620 ORTHO05D005999 2.9e-93 345.5 216 84.3
Nn4g26289 Nelumbo nucifera HOM05D004620 ORTHO05D005999 4.9e-93 344.7 216 84.3
Potri.010G089400 Populus trichocarpa HOM05D004620 ORTHO05D005999 1.4e-92 343.2 209 83.3
VMungo0720G0388 Vigna mungo HOM05D004620 ORTHO05D005999 1.9e-92 342.8 211 83.4
Eucgr.B01088 Eucalyptus grandis HOM05D004620 ORTHO05D005999 4.1e-92 341.7 218 84.4
Phvul.007G055900 Phaseolus vulgaris HOM05D004620 ORTHO05D005999 5.4e-92 341.3 211 84.4
TAR365G1144 Trochodendron aralioides HOM05D004620 ORTHO05D005999 5.4e-92 341.3 212 82.5
Hma1.2p1_0745F.1_g212030 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 7.1e-92 340.9 214 84.1
GSVIVG01001159001 Vitis vinifera HOM05D004620 ORTHO05D005999 9.2e-92 340.5 209 83.3
MD13G1191300 Malus domestica HOM05D004620 ORTHO05D005999 1.6e-91 339.7 214 84.1
Sabra08G0115400 Salix brachista HOM05D004620 ORTHO05D005999 3.5e-91 338.6 210 82.4
Manes.15G027800 Manihot esculenta HOM05D004620 ORTHO05D005999 6.0e-91 337.8 210 81.4
Rhsim04G0206400 Rhododendron simsii HOM05D004620 ORTHO05D005999 6.0e-91 337.8 214 81.3
Haze_00917 Corylus avellana HOM05D004620 ORTHO05D005999 7.8e-91 337.4 213 81.7
MSTRG.9993 Avicennia marina HOM05D004620 ORTHO05D005999 1.7e-90 336.3 212 83.0
Cfa015626 Carpinus fangiana HOM05D004620 ORTHO05D005999 2.3e-90 335.9 213 81.7
Migut.G00327 Erythranthe guttata HOM05D004620 ORTHO05D005999 2.3e-90 335.9 215 81.9
TWI73G0890 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 5.1e-90 334.7 213 79.8
Duzib138G0113 Durio zibethinus HOM05D004620 ORTHO05D005999 8.6e-90 334.0 213 82.2
PSO761G0667 Papaver somniferum HOM05D004620 ORTHO05D005999 8.6e-90 334.0 213 81.7
Ciclev10022248m.g Citrus clementina HOM05D004620 ORTHO05D005999 1.1e-89 333.6 211 80.6
Glyma.20G144700 Glycine max HOM05D004620 ORTHO05D005999 1.1e-89 333.6 211 82.0
Manes.02G143000 Manihot esculenta HOM05D004620 ORTHO05D005999 1.5e-89 333.2 216 81.0
Glyma.10G249000 Glycine max HOM05D004620 ORTHO05D005999 1.9e-89 332.8 213 81.7
Lsat_1_v5_gn_3_11160 Lactuca sativa HOM05D004620 ORTHO05D005999 2.5e-89 332.4 211 82.9
PSO210G3526 Papaver somniferum HOM05D004620 ORTHO05D005999 2.5e-89 332.4 213 81.2
Ciclev10005892m.g Citrus clementina HOM05D004620 ORTHO05D005999 3.3e-89 332.0 211 81.0
MD16G1191400 Malus domestica HOM05D004620 ORTHO05D005999 3.3e-89 332.0 215 82.8
Cc03_g03590 Coffea canephora HOM05D004620 ORTHO05D005999 4.3e-89 331.6 213 82.2
Prupe.1G011500 Prunus persica HOM05D004620 ORTHO05D005999 4.3e-89 331.6 215 82.3
TWI53G0112 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 5.6e-89 331.3 214 79.0
Medtr5g006130 Medicago truncatula HOM05D004620 ORTHO05D005999 7.3e-89 330.9 218 79.8
Peaxi162Scf00092g00145 Petunia axillaris HOM05D004620 ORTHO05D005999 7.3e-89 330.9 214 79.9
Psat4g210680 Pisum sativum HOM05D004620 ORTHO05D005999 9.5e-89 330.5 214 79.9
CsaV3_3G013420 Cucumis sativus L. HOM05D004620 ORTHO05D005999 1.6e-88 329.7 211 80.6
SGA_v2.0_scaffold39G15267 Striga asiatica HOM05D004620 ORTHO05D005999 1.6e-88 329.7 215 81.4
Aqoxy2G03369 Aquilegia oxysepala HOM05D004620 ORTHO05D005999 3.6e-88 328.6 215 79.1
COL.COLO4_09078 Corchorus olitorius HOM05D004620 ORTHO05D005999 3.6e-88 328.6 212 81.1
MELO3C006539.2 Cucumis melo HOM05D004620 ORTHO05D005999 3.6e-88 328.6 214 79.9
Sopen06g019380 Solanum pennellii HOM05D004620 ORTHO05D005999 4.7e-88 328.2 213 82.2
AUR62003053 Chenopodium quinoa HOM05D004620 ORTHO05D005999 8.1e-88 327.4 212 78.8
Duzib211G0345 Durio zibethinus HOM05D004620 ORTHO05D005999 8.1e-88 327.4 211 82.0
Lj5g0027866 Lotus japonicus HOM05D004620 ORTHO05D005999 8.1e-88 327.4 218 80.3
Solyc06g054260.1 Solanum lycopersicum HOM05D004620 ORTHO05D005999 8.1e-88 327.4 213 81.7
PGSC0003DMG400011816 Solanum tuberosum HOM05D004620 ORTHO05D005999 8.1e-88 327.4 213 81.7
AUR62007866 Chenopodium quinoa HOM05D004620 ORTHO05D005999 1.4e-87 326.6 215 80.0
Peaxi162Scf00642g00013 Petunia axillaris HOM05D004620 ORTHO05D005999 1.8e-87 326.2 213 81.2
Nitab4.5_0002946g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 2.3e-87 325.9 214 79.0
FAN07G2783 Fragaria x ananassa HOM05D004620 ORTHO05D005999 4.0e-87 325.1 216 79.6
FAN22G0449 Fragaria x ananassa HOM05D004620 ORTHO05D005999 4.0e-87 325.1 216 79.6
Gorai.008G004100 Gossypium raimondii HOM05D004620 ORTHO05D005999 5.2e-87 324.7 216 79.6
Nitab4.5_0000321g0050 Nicotiana tabacum HOM05D004620 ORTHO05D005999 5.2e-87 324.7 214 82.7
Gohir.D12G004300 Gossypium hirsutum HOM05D004620 ORTHO05D005999 6.8e-87 324.3 216 80.1
Lalb_Chr09g0319821 Lupinus albus HOM05D004620 ORTHO05D005999 6.8e-87 324.3 220 79.5
Thecc.01G277200 Theobroma cacao HOM05D004620 ORTHO05D005999 6.8e-87 324.3 212 80.7
FvH4_4g15260 Fragaria vesca HOM05D004620 ORTHO05D005999 8.9e-87 323.9 216 78.7
FAN12G0806 Fragaria x ananassa HOM05D004620 ORTHO05D005999 8.9e-87 323.9 216 78.7
Nitab4.5_0014875g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 8.9e-87 323.9 212 82.1
CAN.G873.3 Capsicum annuum HOM05D004620 ORTHO05D005999 2.0e-86 322.8 211 80.6
Ca_24392_v3 Cicer arietinum L. HOM05D004620 ORTHO05D005999 2.0e-86 322.8 224 77.2
Gorai.004G079200 Gossypium raimondii HOM05D004620 ORTHO05D005999 2.0e-86 322.8 213 81.2
MBI04_g40949_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 2.0e-86 322.8 212 79.2
RcHm_v2.0_Chr4g0416571 Rosa chinensis HOM05D004620 ORTHO05D005999 2.6e-86 322.4 216 79.2
FAN17G0373 Fragaria x ananassa HOM05D004620 ORTHO05D005999 3.4e-86 322.0 216 79.2
MBI01_g45395_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 5.8e-86 321.2 211 80.6
Gohir.D08G074900 Gossypium hirsutum HOM05D004620 ORTHO05D005999 7.6e-86 320.9 213 80.8
Gohir.A08G066200 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.3e-85 320.1 213 80.3
CANSAT78G0495 Cannabis sativa HOM05D004620 ORTHO05D005999 2.9e-85 318.9 226 76.5
TPR.G37997 Trifolium pratense HOM05D004620 ORTHO05D005999 2.9e-85 318.9 216 78.7
Sed0012901 Sechium edule HOM05D004620 ORTHO05D005999 8.3e-85 317.4 212 78.8
EL10Ac6g14667 Beta vulgaris HOM05D004620 ORTHO05D005999 1.1e-84 317.0 221 76.9
Lsat_1_v5_gn_6_83821 Lactuca sativa HOM05D000776 ORTHO05D001624 1.1e-84 317.0 213 79.3
Migut.N00177 Erythranthe guttata HOM05D004620 ORTHO05D005999 1.4e-84 316.6 217 79.7
Nitab4.5_0000043g0320 Nicotiana tabacum HOM05D004620 ORTHO05D005999 2.4e-84 315.8 214 78.5
ECA246G4948 Erigeron canadensis HOM05D004620 ORTHO05D005999 5.4e-84 314.7 217 79.3
HanXRQChr17g0534921 Helianthus annuus HOM05D004620 ORTHO05D005999 1.6e-83 313.2 217 78.3
HanXRQChr03g0083391 Helianthus annuus HOM05D004620 ORTHO05D005999 2.1e-83 312.8 215 77.7
CDE05G2563 Ceratophyllum demersum HOM05D004620 ORTHO05D005999 4.6e-83 311.6 212 77.8
Actinidia08500 Actinidia chinensis HOM05D004620 ORTHO05D005999 8.6e-82 307.4 186 84.9
Dinv13981 Davidia involucrata HOM05D004620 ORTHO05D005999 8.6e-82 307.4 194 82.5
DCAR_030627 Daucus carota HOM05D004620 ORTHO05D005999 1.1e-81 307.0 213 74.6
ATR0332G058 Amborella trichopoda HOM05D004620 ORTHO05D005999 3.3e-81 305.4 212 75.5
Sc25g0004390 Simmondsia chinensis HOM05D004620 ORTHO05D005999 4.3e-81 305.1 212 76.4
Sp1g02150 Schrenkiella parvula HOM05D004620 ORTHO05D005999 5.6e-81 304.7 212 75.9
unitig_747.g21095 Utricularia gibba HOM05D004620 ORTHO05D005999 5.6e-81 304.7 212 75.5
Gohir.A12G004600 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.2e-80 303.5 203 78.3
Lalb_Chr05g0210951 Lupinus albus HOM05D004620 ORTHO05D005999 1.2e-80 303.5 211 75.4
CDE05G3644 Ceratophyllum demersum HOM05D004620 ORTHO05D000775 1.6e-80 303.1 212 76.4
QL06p003010 Quercus lobata HOM05D004620 ORTHO05D005999 2.1e-80 302.8 210 76.7
Actinidia40184 Actinidia chinensis HOM05D004620 ORTHO05D005999 4.7e-80 301.6 202 79.2
AL6G50160 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 4.7e-80 301.6 212 75.9
CARHR251140 Cardamine hirsuta HOM05D004620 ORTHO05D005999 6.2e-80 301.2 211 76.3
AT4G02770 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 1.1e-79 300.4 214 75.2
Carub.0006s3429 Capsella rubella HOM05D004620 ORTHO05D005999 1.1e-79 300.4 212 75.9
THA.LOC104801241 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 1.1e-79 300.4 215 74.4
Sp6g02800 Schrenkiella parvula HOM05D004620 ORTHO05D005999 1.8e-79 299.7 211 75.4
THA.LOC104815937 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 2.4e-79 299.3 214 74.8
unitig_699.g19993 Utricularia gibba HOM05D004620 ORTHO05D005999 4.0e-79 298.5 213 74.2
CARHR002480 Cardamine hirsuta HOM05D004620 ORTHO05D005999 5.2e-79 298.1 211 75.8
AT1G03130 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 1.2e-78 297.0 214 75.7
AL1G12600 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 1.5e-78 296.6 215 74.9
C09p02270 Brassica napus HOM05D004620 ORTHO05D005999 3.4e-78 295.4 215 73.5
Carub.0001s0227 Capsella rubella HOM05D004620 ORTHO05D005999 3.4e-78 295.4 216 74.1
Os08g0560900 Oryza sativa ssp. japonica HOM05D004620 ORTHO05D005999 5.8e-78 294.7 214 73.4
BcaC04g24013 Brassica carinata HOM05D004620 ORTHO05D005999 7.6e-78 294.3 214 73.8
Sed0026123 Sechium edule HOM05D004620 ORTHO05D005999 7.6e-78 294.3 210 73.3
BolC9t53156H Brassica oleracea HOM05D004620 ORTHO05D005999 9.9e-78 293.9 213 73.7
A09p02190 Brassica napus HOM05D004620 ORTHO05D005999 2.2e-77 292.7 214 73.8
Thhalv10029178m.g Eutrema salsugineum HOM05D004620 ORTHO05D005999 2.2e-77 292.7 184 80.4
BraA09t35867Z Brassica rapa HOM05D004620 ORTHO05D005999 2.9e-77 292.4 213 73.7
Zm00001eb212520 Zea mays HOM05D004620 ORTHO05D005999 2.9e-77 292.4 210 73.8
BcaB01g02006 Brassica carinata HOM05D004620 ORTHO05D005999 3.8e-77 292.0 216 73.6
Lj6P600T27 Lonicera japonica HOM05D004620 ORTHO05D005999 1.1e-76 290.4 209 76.1
Aa31LG5G2470 Aethionema arabicum HOM05D004620 ORTHO05D005999 4.2e-76 288.5 217 71.9
Atru.chr5.1457 Acer truncatum HOM05D004620 ORTHO05D005999 5.4e-76 288.1 190 78.4
Ah.02g126660 Amaranthus hybridus HOM05D004620 ORTHO05D005999 7.1e-76 287.7 211 75.4
Ah.02g126670 Amaranthus hybridus HOM05D004620 ORTHO05D005999 7.1e-76 287.7 211 75.4
CSS0012673 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 2.5e-73 279.3 214 71.5
Dinv44516 Davidia involucrata HOM05D004620 ORTHO05D005999 1.6e-72 276.6 215 70.2
SEGI_38956 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 1.8e-71 273.1 213 69.5
Medtr1g104630 Medicago truncatula HOM05D004620 ORTHO05D005999 2.4e-71 272.7 211 69.2
SMO276G0022 Selaginella moellendorffii HOM05D004620 ORTHO05D005999 5.8e-70 268.1 146 86.3
AagrBONN_evm.TU.Sc2ySwM_344.3373 Anthoceros agrestis HOM05D004620 ORTHO05D005999 6.4e-69 264.6 152 82.9
AagrBONN_evm.TU.Sc2ySwM_344.3381 Anthoceros agrestis HOM05D004620 ORTHO05D005999 6.4e-69 264.6 211 67.3
CBR_g29404 Chara braunii HOM05D004620 ORTHO05D005999 2.7e-67 259.2 180 71.1
Pp3c6_1620 Physcomitrium patens HOM05D004620 ORTHO05D005999 7.9e-67 257.7 210 65.7
Pp3c16_23780 Physcomitrium patens HOM05D004620 ORTHO05D005999 1.0e-66 257.3 154 81.2
Pp3c3_5620 Physcomitrium patens HOM05D004620 ORTHO05D005999 1.0e-66 257.3 149 83.2
SEGI_24049 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 3.0e-66 255.8 202 69.3
Pp3c13_2310 Physcomitrium patens HOM05D004620 ORTHO05D005999 5.1e-66 255.0 219 63.5
Mapoly0141s0027 Marchantia polymorpha HOM05D004620 ORTHO05D005999 7.3e-65 251.1 175 73.1
HPP92_018490 Vanilla planifolia HOM05D004620 ORTHO05D005999 1.4e-60 236.9 177 69.5
Actinidia23481 Actinidia chinensis HOM05D004620 ORTHO05D005999 1.6e-59 233.4 214 64.5
Eucgr.H03534 Eucalyptus grandis HOM05D004620 ORTHO05D005999 4.6e-59 231.9 214 65.0
PRCOL_00005075 Prasinoderma coloniale HOM05D004620 ORTHO05D005999 3.9e-58 228.8 142 78.2
MCO13G106 Micromonas commoda HOM05D004620 ORTHO05D005999 1.5e-57 226.9 180 64.4
Cre05.g238332 Chlamydomonas reinhardtii HOM05D004620 ORTHO05D005999 2.0e-54 216.5 165 66.1
GSVIVG01017944001 Vitis vinifera HOM05D004620 ORTHO05D005999 2.2e-45 186.4 212 54.7
Hma1.2p1_1898F.1_g306910 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 5.1e-42 175.3 92 90.2
TAR633G1350 Trochodendron aralioides HOM05D004620 ORTHO05D005999 5.7e-33 145.2 75 93.3
Lsat_1_v5_gn_2_36061 Lactuca sativa HOM05D004620 ORTHO05D232623 2.7e-19 99.8 109 56.0
Lsat_1_v5_gn_1_32540 Lactuca sativa HOM05D004620 ORTHO05D232094 3.0e-18 96.3 109 56.0
Lsat_1_v5_gn_7_40400 Lactuca sativa HOM05D004620 ORTHO05D229089 3.0e-18 96.3 109 56.0
CAN.G907.14 Capsicum annuum HOM05D004620 ORTHO05D115364 7.2e-12 75.1 85 51.8


User provided reference genes

Program Settings