Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_08044 Corchorus olitorius HOM05D004682 ORTHO05D006197 0.0e+00 2036.5 1067 100.0
Thecc.01G288600 Theobroma cacao HOM05D004682 ORTHO05D006197 0.0e+00 1778.5 1138 84.1
Duzib138G0788 Durio zibethinus HOM05D004682 ORTHO05D006197 0.0e+00 1755.3 1138 82.3
Gohir.D11G123600 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1699.5 1126 80.4
Gohir.A11G118700 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1694.5 1126 78.9
Gorai.007G132500 Gossypium raimondii HOM05D004682 ORTHO05D006197 0.0e+00 1694.5 1126 80.3
QL12p023658 Quercus lobata HOM05D004682 ORTHO05D006197 0.0e+00 1488.0 1142 70.3
CiPaw.07G098500 Carya illinoinensis HOM05D004682 ORTHO05D006197 0.0e+00 1478.4 1144 70.5
Ciclev10018593m.g Citrus clementina HOM05D004682 ORTHO05D006197 0.0e+00 1478.0 1140 71.1
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 0.0e+00 1451.4 1146 69.9
Hma1.2p1_0399F.1_g144320 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 0.0e+00 1448.3 1135 68.8
GSVIVG01011020001 Vitis vinifera HOM05D004682 ORTHO05D006197 0.0e+00 1432.2 1140 69.6
CSS0044691 Camellia sinensis var. sinensis HOM05D004682 ORTHO05D006197 0.0e+00 1431.0 1138 68.3
TAR633G2734 Trochodendron aralioides HOM05D004682 ORTHO05D006197 0.0e+00 1422.9 1144 68.9
Sed0020737 Sechium edule HOM05D004682 ORTHO05D006197 0.0e+00 1420.2 1136 67.4
Actinidia00705 Actinidia chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1406.3 1138 67.5
Potri.002G230800 Populus trichocarpa HOM05D004682 ORTHO05D006197 0.0e+00 1405.2 1113 69.7
Eucgr.K03425 Eucalyptus grandis HOM05D004682 ORTHO05D006197 0.0e+00 1404.0 1131 67.4
Prupe.8G250900 Prunus persica HOM05D004682 ORTHO05D006197 0.0e+00 1402.9 1124 69.0
Manes.01G212500 Manihot esculenta HOM05D004682 ORTHO05D006197 0.0e+00 1398.3 1139 68.2
CsaV3_1G038120 Cucumis sativus L. HOM05D004682 ORTHO05D006197 0.0e+00 1392.1 1137 66.0
Haze_04797 Corylus avellana HOM05D004682 ORTHO05D006197 0.0e+00 1391.7 1015 72.5
Rhsim13G0018300 Rhododendron simsii HOM05D004682 ORTHO05D006197 0.0e+00 1366.3 1206 64.5
Nn3g21239 Nelumbo nucifera HOM05D004682 ORTHO05D006197 0.0e+00 1365.9 1144 66.1
PGR044G1334 Punica granatum HOM05D004682 ORTHO05D006197 0.0e+00 1360.1 1125 66.4
CANSAT25G1381 Cannabis sativa HOM05D004682 ORTHO05D006197 0.0e+00 1359.0 1138 64.9
arahy.Tifrunner.gnm1.ann1.SJK0SQ Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1357.4 1143 64.1
Cc01_g20100 Coffea canephora HOM05D004682 ORTHO05D006197 0.0e+00 1354.0 1145 65.4
Glyma.03G207600 Glycine max HOM05D004682 ORTHO05D006197 0.0e+00 1346.3 1117 65.5
Sabra02G0176000 Salix brachista HOM05D004682 ORTHO05D006197 0.0e+00 1345.9 1125 66.7
vmacro02515 Vaccinium macrocarpon HOM05D004682 ORTHO05D006197 0.0e+00 1344.3 1246 61.6
VMungo1383G2773 Vigna mungo HOM05D004682 ORTHO05D006197 0.0e+00 1340.9 1138 63.7
MD11G1296700 Malus domestica HOM05D004682 ORTHO05D006197 0.0e+00 1338.6 1103 67.0
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 0.0e+00 1332.8 1014 69.8
Oeu002696.1 Olea europaea HOM05D004682 ORTHO05D006197 0.0e+00 1332.8 1184 62.4
arahy.Tifrunner.gnm1.ann1.BJ6WT1 Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1326.6 1143 63.1
THA.LOC104817537 Tarenaya hassleriana HOM05D004682 ORTHO05D006197 0.0e+00 1321.2 1050 66.6
Lj2A1184G69 Lonicera japonica HOM05D004682 ORTHO05D006197 0.0e+00 1315.4 1073 66.0
Ca_09103_v3 Cicer arietinum L. HOM05D004682 ORTHO05D006197 0.0e+00 1312.7 1114 62.8
Lj1g0026346 Lotus japonicus HOM05D004682 ORTHO05D006197 0.0e+00 1311.6 1130 64.0
RcHm_v2.0_Chr6g0292391 Rosa chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1301.6 1129 64.8
Lalb_Chr20g0111011 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1298.9 1088 64.8
Thhalv10001288m.g Eutrema salsugineum HOM05D004682 ORTHO05D006197 0.0e+00 1296.2 1107 62.1
Aa31LG1G29400 Aethionema arabicum HOM05D004682 ORTHO05D006197 0.0e+00 1294.3 1116 64.0
Phvul.001G201200 Phaseolus vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1292.7 1121 62.5
Atru.chr5.1294 Acer truncatum HOM05D004682 ORTHO05D006197 0.0e+00 1290.0 1142 64.6
AL4G47570 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1289.2 1035 64.6
MBI19_g27957_MAGBIO Magnolia biondii HOM05D004682 ORTHO05D006197 0.0e+00 1287.3 1180 62.2
MSTRG.18200 Avicennia marina HOM05D004682 ORTHO05D006197 0.0e+00 1285.4 1120 62.0
CARHR143360 Cardamine hirsuta HOM05D004682 ORTHO05D006197 0.0e+00 1283.5 1095 63.1
Sp4g29900 Schrenkiella parvula HOM05D004682 ORTHO05D006197 0.0e+00 1283.5 1109 61.9
FvH4_2g24570 Fragaria vesca HOM05D004682 ORTHO05D006197 0.0e+00 1282.7 1143 63.9
FAN15G3206 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1280.4 1144 63.8
FAN27G0404 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1280.4 1144 63.6
PSO170G5080 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1280.0 1099 63.4
FAN24G1905 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1273.1 1144 63.7
AT2G47980 Arabidopsis thaliana HOM05D004682 ORTHO05D006197 0.0e+00 1272.7 1035 64.1
Aqoxy2G03153 Aquilegia oxysepala HOM05D004682 ORTHO05D006197 0.0e+00 1266.9 1142 61.6
Sopen05g022990 Solanum pennellii HOM05D004682 ORTHO05D006197 0.0e+00 1266.9 1128 60.1
CAN.G13.21 Capsicum annuum HOM05D004682 ORTHO05D006197 0.0e+00 1266.5 1125 60.5
BcaB02g08728 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1264.2 1102 61.2
DCAR_018370 Daucus carota HOM05D004682 ORTHO05D006197 0.0e+00 1263.1 1137 63.9
Carub.0004s3070 Capsella rubella HOM05D004682 ORTHO05D006197 0.0e+00 1259.2 1054 62.5
Lalb_Chr25g0287581 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1259.2 1089 63.5
Solyc05g026510.4 Solanum lycopersicum HOM05D004682 ORTHO05D006197 0.0e+00 1259.2 1144 59.4
PSO407G0071 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1257.7 1136 62.2
TPR.G32282 Trifolium pratense HOM05D004682 ORTHO05D006197 0.0e+00 1257.7 1092 62.3
CDE05G1251 Ceratophyllum demersum HOM05D004682 ORTHO05D006197 0.0e+00 1254.6 1121 63.0
AUR62013599 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1254.6 1131 60.1
TWI59G0906 Tripterygium wilfordii HOM05D004682 ORTHO05D006197 0.0e+00 1252.7 1131 63.0
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1251.5 1071 61.7
Medtr7g107440 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1250.3 1143 60.9
FAN20G1430 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1250.0 1135 63.3
BcaC02g12533 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1246.9 1077 61.6
HanXRQChr10g0283031 Helianthus annuus HOM05D004682 ORTHO05D006197 0.0e+00 1245.0 1095 62.9
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1244.2 1069 61.6
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 0.0e+00 1244.2 1067 61.8
SalBow3G2371 Salvia bowleyana HOM05D004682 ORTHO05D006197 0.0e+00 1243.0 1152 58.7
AUR62026692 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1241.1 1105 60.7
Psat3g025520 Pisum sativum HOM05D004682 ORTHO05D006197 0.0e+00 1240.7 1148 59.8
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 0.0e+00 1238.8 1087 61.0
Migut.D00237 Erythranthe guttata HOM05D004682 ORTHO05D006197 0.0e+00 1235.7 1139 59.9
Lsat_1_v5_gn_9_5121 Lactuca sativa HOM05D004682 ORTHO05D006197 0.0e+00 1216.4 1148 58.8
Peaxi162Scf00159g01650 Petunia axillaris HOM05D004682 ORTHO05D006197 0.0e+00 1208.7 1131 59.9
EL10Ac1g01562 Beta vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1207.2 1102 61.4
SGA_v2.0_scaffold1G00427 Striga asiatica HOM05D004682 ORTHO05D006197 0.0e+00 1204.9 1155 57.6
ECA247G2915 Erigeron canadensis HOM05D004682 ORTHO05D006197 0.0e+00 1202.6 1145 58.2
Ah.05g167980 Amaranthus hybridus HOM05D004682 ORTHO05D006197 0.0e+00 1200.3 1134 59.4
Hund18022 Selenicereus undatus HOM05D004682 ORTHO05D006197 0.0e+00 1180.6 1080 59.4
Nitab4.5_0000135g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1163.3 1393 49.4
Nitab4.5_0000282g0030 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1161.7 1090 58.4
MELO3C015235.2 Cucumis melo HOM05D004682 ORTHO05D006197 0.0e+00 1161.4 904 67.5
Medtr1g048130 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1161.4 1061 59.3
AL7G17990 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1149.4 991 61.6
Os05g0188500 Oryza sativa ssp. japonica HOM05D004682 ORTHO05D006197 0.0e+00 1125.9 1059 57.5
unitig_22.g5252 Utricularia gibba HOM05D004682 ORTHO05D006197 0.0e+00 1125.5 1107 55.5
ATR0706G112 Amborella trichopoda HOM05D004682 ORTHO05D006197 0.0e+00 1114.8 1098 55.9
Medtr1g047970 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1101.7 1065 58.0
Zm00001eb115650 Zea mays HOM05D004682 ORTHO05D006197 5.1e-311 1071.2 1103 53.6
SEGI_13218 Sequoiadendron giganteum HOM05D004682 ORTHO05D006197 1.9e-310 1069.3 1109 52.8
PGSC0003DMG401015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 9.4e-310 1067.0 910 62.0
Potri.014G151400 Populus trichocarpa HOM05D004682 ORTHO05D006197 1.3e-306 1056.6 880 66.7
COL.COLO4_31667 Corchorus olitorius HOM05D004682 ORTHO05D006197 6.3e-298 1027.7 951 58.0
Cpa.g.sc9.149 Carica papaya HOM05D004682 ORTHO05D006197 2.9e-295 1018.8 1109 53.9
HPP92_017192 Vanilla planifolia HOM05D004682 ORTHO05D006197 3.7e-290 1001.9 1094 53.5
Sc17g0003630 Simmondsia chinensis HOM05D004682 ORTHO05D006197 2.9e-282 975.7 786 66.0
HPP92_027340 Vanilla planifolia HOM05D004682 ORTHO05D006197 2.0e-280 969.5 1120 51.2
Mapoly0007s0132 Marchantia polymorpha HOM05D004682 ORTHO05D006197 9.9e-267 924.1 1061 48.4
Hma1.2p1_1049F.1_g251880 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 1.4e-265 920.2 675 71.6
SHI14494 Sapria himalayana HOM05D004682 ORTHO05D006197 2.7e-256 889.4 784 61.6
SMO347G0479 Selaginella moellendorffii HOM05D004682 ORTHO05D006197 3.4e-243 845.9 960 47.2
Pp3c9_5570 Physcomitrium patens HOM05D004682 ORTHO05D006197 3.0e-239 832.8 1057 44.4
Hma1.2p1_0399F.1_g144310 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 1.5e-230 803.9 553 75.8
Hma1.2p1_1049F.1_g251875 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 1.5e-230 803.9 553 75.8
QL12p023612 Quercus lobata HOM05D004682 ORTHO05D006197 3.7e-229 799.3 672 66.2
AagrBONN_evm.TU.Sc2ySwM_369.560 Anthoceros agrestis HOM05D004682 ORTHO05D006197 5.5e-225 785.4 1047 42.9
Hma1.2p1_0399F.1_g144330 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 1.2e-195 688.0 540 68.1
CBR_g31051 Chara braunii HOM05D004682 ORTHO05D006197 6.1e-184 649.0 1043 38.3
ClCG03G018080 Citrullus lanatus HOM05D004682 ORTHO05D006197 1.6e-155 554.7 400 72.5
Medtr3g050420 Medicago truncatula HOM05D004682 ORTHO05D006197 1.3e-77 295.8 392 47.2
HanXRQChr08g0228671 Helianthus annuus HOM05D004682 ORTHO05D006197 2.3e-58 231.9 194 61.3
Actinidia24288 Actinidia chinensis HOM05D004682 ORTHO05D006197 1.6e-54 219.2 144 74.3
PGSC0003DMG402015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 8.6e-53 213.4 213 53.5
MCO01G509 Micromonas commoda HOM05D004682 ORTHO05D006197 1.4e-47 196.1 493 28.4
ClCG03G018060 Citrullus lanatus HOM05D004682 ORTHO05D006197 3.3e-44 184.9 223 47.1
HanXRQChr08g0228681 Helianthus annuus HOM05D004682 ORTHO05D006197 2.0e-41 175.6 188 53.7
Cre17.g736400 Chlamydomonas reinhardtii HOM05D004682 ORTHO05D006197 3.3e-36 158.3 390 30.3
Cfa025969 Carpinus fangiana HOM05D004682 ORTHO05D006197 4.4e-33 147.9 337 28.2
DCAR_030309 Daucus carota HOM05D004682 ORTHO05D006197 6.0e-30 137.5 153 53.6
PSO384G2775 Papaver somniferum HOM05D004682 ORTHO05D006197 3.6e-27 128.3 112 60.7
Thecc.06G206000 Theobroma cacao HOM05D004682 ORTHO05D006197 3.4e-25 121.7 146 51.4
Medtr5g092930 Medicago truncatula HOM05D004682 ORTHO05D006197 1.7e-24 119.4 96 63.5
Duzib147G0309 Durio zibethinus HOM05D004682 ORTHO05D006197 6.0e-22 110.9 106 64.2
PGSC0003DMG400019558 Solanum tuberosum HOM05D004682 ORTHO05D006197 1.3e-19 103.2 106 51.9
COL.COLO4_03377 Corchorus olitorius HOM05D004682 ORTHO05D006197 3.6e-19 101.7 89 86.5
Thecc.06G205900 Theobroma cacao HOM05D004682 ORTHO05D006197 1.4e-18 99.8 71 69.0
RcHm_v2.0_Chr5g0002211 Rosa chinensis HOM05D004682 ORTHO05D029379 5.8e-17 94.4 277 27.1
PGSC0003DMG400019559 Solanum tuberosum HOM05D004682 ORTHO05D006197 1.7e-16 92.8 174 38.5
Medtr5g092920 Medicago truncatula HOM05D036979 ORTHO05D006197 3.5e-14 85.1 57 77.2
PGSC0003DMG400006683 Solanum tuberosum HOM05D004682 ORTHO05D006197 6.0e-14 84.3 81 54.3
Hma1.2p1_1049F.1_g251890 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 3.0e-13 82.0 82 62.2
PGSC0003DMG400017057 Solanum tuberosum HOM05D004682 ORTHO05D005906 1.5e-09 69.7 50 56.0
Solyc09g037030.2 Solanum lycopersicum HOM05D020974 ORTHO05D023151 3.4e-09 68.6 115 40.0
Medtr7g089690 Medicago truncatula HOM05D004682 ORTHO05D006197 3.8e-08 65.1 68 48.5
COL.COLO4_15782 Corchorus olitorius HOM05D004682 ORTHO05D006197 2.4e-07 62.4 117 35.0
Solyc05g021530.3 Solanum lycopersicum HOM05D025699 ORTHO05D026176 1.2e-06 60.1 74 50.0
PGSC0003DMG400005432 Solanum tuberosum HOM05D004682 ORTHO05D003903 1.2e-06 60.1 62 51.6
Nitab4.5_0000282g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 2.1e-06 59.3 92 41.3
Solyc03g150123.1 Solanum lycopersicum HOM05D004682 ORTHO05D026176 2.7e-06 58.9 58 53.4
PGSC0003DMG400017058 Solanum tuberosum HOM05D004682 ORTHO05D026186 6.0e-06 57.8 87 43.7


User provided reference genes

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