Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_07959 Corchorus olitorius HOM05D006493 ORTHO05D009864 8.7e-54 213.4 108 100.0
Lj2C1221T62 Lonicera japonica HOM05D006493 ORTHO05D009864 2.4e-48 195.3 108 91.7
Lj2C1230T74 Lonicera japonica HOM05D006493 ORTHO05D009864 2.4e-48 195.3 108 91.7
Hund29781 Selenicereus undatus HOM05D006493 ORTHO05D009864 2.4e-48 195.3 108 91.7
Psat7g093520 Pisum sativum HOM05D006493 ORTHO05D009864 3.5e-47 191.4 108 89.8
TPR.G39758 Trifolium pratense HOM05D006493 ORTHO05D009864 3.5e-47 191.4 108 89.8
Potri.007G062522 Populus trichocarpa HOM05D006493 ORTHO05D009864 6.0e-47 190.7 108 90.7
RhsimMtG0006700 Rhododendron simsii HOM05D006493 ORTHO05D009864 6.0e-47 190.7 108 90.7
SabraMtG0004500 Salix brachista HOM05D006493 ORTHO05D009864 6.0e-47 190.7 108 90.7
DCAR_028366 Daucus carota HOM05D006493 ORTHO05D009864 7.9e-47 190.3 108 89.8
LjContig00439g0012697 Lotus japonicus HOM05D006493 ORTHO05D009864 1.3e-46 189.5 107 89.7
LjContig00439g0026284 Lotus japonicus HOM05D006493 ORTHO05D009864 1.3e-46 189.5 107 89.7
A04p09370 Brassica napus HOM05D006493 ORTHO05D009864 1.8e-46 189.1 108 88.9
BolSC28t60313H Brassica oleracea HOM05D006493 ORTHO05D009864 1.8e-46 189.1 108 88.9
BraSC159t45728Z Brassica rapa HOM05D006493 ORTHO05D009864 1.8e-46 189.1 108 88.9
BraSC48t46238Z Brassica rapa HOM05D006493 ORTHO05D009864 1.8e-46 189.1 108 88.9
Solyc00g125990.1 Solanum lycopersicum HOM05D006493 ORTHO05D009864 1.8e-46 189.1 108 89.8
PGSC0003DMG400021388 Solanum tuberosum HOM05D006493 ORTHO05D009864 1.8e-46 189.1 108 89.8
Aa31csc239G90 Aethionema arabicum HOM05D006493 ORTHO05D009864 2.3e-46 188.7 107 88.8
SGA_v2.0_scaffold255G45360 Striga asiatica HOM05D006493 ORTHO05D009864 2.3e-46 188.7 108 90.7
AT2G07689 Arabidopsis thaliana HOM05D006493 ORTHO05D009864 5.1e-46 187.6 108 88.0
CARHR283510 Cardamine hirsuta HOM05D006493 ORTHO05D009864 5.1e-46 187.6 108 88.0
CARHR288180 Cardamine hirsuta HOM05D006493 ORTHO05D009864 5.1e-46 187.6 108 88.0
Lsat_1_v5_gn_1_2660 Lactuca sativa HOM05D006493 ORTHO05D009864 5.1e-46 187.6 108 88.9
Lsat_1_v5_gn_5_28201 Lactuca sativa HOM05D006493 ORTHO05D009864 5.1e-46 187.6 108 88.9
HanXRQMTg0579071 Helianthus annuus HOM05D006493 ORTHO05D009864 6.7e-46 187.2 108 88.0
Peaxi162Scf00286g00018 Petunia axillaris HOM05D006493 ORTHO05D009864 8.7e-46 186.8 108 88.0
Lsat_1_v5_gn_0_38180 Lactuca sativa HOM05D006493 ORTHO05D009864 1.9e-45 185.7 108 88.9
RcHm_v2.0_MTg0498511 Rosa chinensis HOM05D006493 ORTHO05D009864 5.6e-45 184.1 108 87.0
unitig_87.g27995 Utricularia gibba HOM05D006493 ORTHO05D009864 9.6e-45 183.3 108 88.9
CsaV3_UNG208130 Cucumis sativus L. HOM05D006493 ORTHO05D009864 1.6e-44 182.6 108 88.0
CAN.G1159.4 Capsicum annuum HOM05D006493 ORTHO05D009864 4.8e-44 181.0 108 87.0
Sed0007165 Sechium edule HOM05D006493 ORTHO05D009864 2.4e-43 178.7 106 86.8
SalBow1G2520 Salvia bowleyana HOM05D006493 ORTHO05D009864 6.9e-43 177.2 108 87.0
Nitab4.5_0000172g1600 Nicotiana tabacum HOM05D006493 ORTHO05D009864 4.5e-42 174.5 108 83.3
HanXRQChr16g0507141 Helianthus annuus HOM05D006493 ORTHO05D009864 7.6e-42 173.7 108 82.4
Ah.10g028490 Amaranthus hybridus HOM05D006493 ORTHO05D009864 2.9e-41 171.8 96 90.6
Nitab4.5_0000085g0150 Nicotiana tabacum HOM05D006493 ORTHO05D009864 8.4e-41 170.2 108 83.3
Nitab4.5_0000055g0330 Nicotiana tabacum HOM05D006493 ORTHO05D009864 1.9e-40 169.1 106 81.1
HanXRQChr07g0188931 Helianthus annuus HOM05D006493 ORTHO05D009864 2.5e-40 168.7 106 83.0
HanXRQChr07g0188941 Helianthus annuus HOM05D006493 ORTHO05D009864 2.5e-40 168.7 106 83.0
TWI79G1044 Tripterygium wilfordii HOM05D006493 ORTHO05D009864 3.2e-40 168.3 108 79.6
Nitab4.5_0000172g0060 Nicotiana tabacum HOM05D006493 ORTHO05D009864 2.7e-39 165.2 108 79.6
Nitab4.5_0000593g0190 Nicotiana tabacum HOM05D006493 ORTHO05D009864 7.9e-39 163.7 108 80.6
AUR62042325 Chenopodium quinoa HOM05D006493 ORTHO05D009864 3.0e-38 161.8 91 90.1
AUR62042341 Chenopodium quinoa HOM05D006493 ORTHO05D009864 3.0e-38 161.8 91 90.1
Gorai.001G164600 Gossypium raimondii HOM05D006493 ORTHO05D009864 3.0e-38 161.8 92 89.1
Hma1.2p1_0110F.1_g052985 Hydrangea macrophylla HOM05D006493 ORTHO05D009864 5.1e-38 161.0 94 87.2
arahy.Tifrunner.gnm1.ann1.REK9CK Arachis hypogaea HOM05D006493 ORTHO05D009864 2.5e-37 158.7 94 85.1
Sp3g25780 Schrenkiella parvula HOM05D006493 ORTHO05D009864 9.7e-37 156.8 92 87.0
arahy.Tifrunner.gnm1.ann1.G2UG47 Arachis hypogaea HOM05D006493 ORTHO05D009864 1.3e-36 156.4 94 84.0
arahy.Tifrunner.gnm1.ann1.PL6HV0 Arachis hypogaea HOM05D006493 ORTHO05D009864 1.3e-36 156.4 94 84.0
Zm00001eb436160 Zea mays HOM05D006493 ORTHO05D009864 2.2e-36 155.6 90 88.9
Solyc00g500314.1 Solanum lycopersicum HOM05D006493 ORTHO05D009864 8.2e-36 153.7 88 90.9
arahy.Tifrunner.gnm1.ann1.FPLM06 Arachis hypogaea HOM05D006493 ORTHO05D009864 9.0e-35 150.2 92 81.5
HanXRQChr09g0256301 Helianthus annuus HOM05D006493 ORTHO05D009864 9.0e-35 150.2 90 85.6
Nn1g10151 Nelumbo nucifera HOM05D006493 ORTHO05D009864 1.2e-34 149.8 90 87.8
Aqoxy1G02970 Aquilegia oxysepala HOM05D006493 ORTHO05D009864 2.0e-34 149.1 90 86.7
CDE02G4414 Ceratophyllum demersum HOM05D006493 ORTHO05D009864 2.0e-34 149.1 90 86.7
PGR069G0009 Punica granatum HOM05D006493 ORTHO05D009864 2.6e-34 148.7 99 79.8
Nitab4.5_0000172g1810 Nicotiana tabacum HOM05D006493 ORTHO05D009864 1.7e-33 146.0 107 73.8
CDE02G4378 Ceratophyllum demersum HOM05D006493 ORTHO05D009864 3.8e-33 144.8 88 85.2
Lalb_Chr00c29g0407921 Lupinus albus HOM05D006493 ORTHO05D009864 6.7e-30 134.0 68 92.6
Lsat_1_v5_gn_3_72900 Lactuca sativa HOM05D006493 ORTHO05D009864 6.3e-28 127.5 73 89.0
Nitab4.5_0008300g0030 Nicotiana tabacum HOM05D006493 ORTHO05D009864 2.4e-27 125.6 94 69.1
GSVIVG01007203001 Vitis vinifera HOM05D006493 ORTHO05D009864 5.3e-27 124.4 74 87.8
SHI34943 Sapria himalayana HOM05D006493 ORTHO05D009864 3.4e-26 121.7 100 70.0
Thhalv10015951m.g Eutrema salsugineum HOM05D006493 ORTHO05D009864 5.5e-24 114.4 65 89.2
Eucgr.F02010 Eucalyptus grandis HOM05D006493 ORTHO05D009864 4.1e-19 98.2 75 69.3
ECA039G0003 Erigeron canadensis HOM05D006493 ORTHO05D011802 3.4e-18 95.1 52 84.6
arahy.Tifrunner.gnm1.ann1.ZF89K8 Arachis hypogaea HOM05D006493 ORTHO05D009864 2.9e-17 92.0 49 85.7
Nitab4.5_0000172g1540 Nicotiana tabacum HOM05D006493 ORTHO05D009864 1.4e-14 83.2 47 83.0
ATR1075G001 Amborella trichopoda HOM05D006493 ORTHO05D009864 9.1e-11 70.5 64 59.4
Haze_26858 Corylus avellana HOM05D000729 ORTHO05D001063 5.9e-10 67.8 100 39.0
Nitab4.5_0000028g0250 Nicotiana tabacum HOM05D006493 ORTHO05D009864 2.2e-09 65.9 43 83.7
Medtr5g077860 Medicago truncatula HOM05D006493 ORTHO05D009864 2.9e-09 65.5 40 70.0
ATR0661G311 Amborella trichopoda HOM05D006493 ORTHO05D009864 1.5e-08 63.2 43 79.1
Migut.C00396 Erythranthe guttata HOM05D006493 ORTHO05D009864 2.1e-07 59.3 45 73.3
Oeu042473.1 Olea europaea HOM05D000729 ORTHO05D009864 8.0e-07 57.4 84 36.9
Solyc11g030790.3 Solanum lycopersicum HOM05D006493 ORTHO05D009864 2.3e-06 55.8 35 71.4


User provided reference genes

Program Settings