Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 0.0e+00 1472.6 788 100.0
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 0.0e+00 1297.7 837 84.6
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 0.0e+00 1268.8 838 82.5
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 0.0e+00 1223.4 830 80.1
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 0.0e+00 1221.8 829 80.3
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 0.0e+00 1217.2 832 79.8
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 1.5e-304 1049.3 847 70.6
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 4.4e-304 1047.7 846 69.9
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 1.1e-299 1033.1 839 69.1
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 1.8e-297 1025.8 843 68.2
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 2.0e-296 1022.3 837 67.4
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 2.4e-294 1015.4 835 67.8
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 3.1e-294 1015.0 839 69.0
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 5.3e-294 1014.2 836 68.1
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 3.5e-293 1011.5 831 67.4
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 1.0e-292 1010.0 832 66.9
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 2.2e-292 1008.8 835 68.0
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 2.9e-292 1008.4 841 67.5
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 8.0e-290 1000.3 839 66.7
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 1.0e-289 1000.0 839 66.6
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 9.1e-286 986.9 845 66.7
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 7.7e-285 983.8 835 65.7
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 1.0e-284 983.4 836 65.4
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 8.6e-284 980.3 847 65.4
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 1.5e-283 979.5 833 66.4
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 5.5e-283 977.6 847 65.4
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 9.5e-283 976.9 848 63.8
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 1.2e-282 976.5 828 67.1
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 8.0e-282 973.8 835 64.0
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 6.8e-281 970.7 844 65.6
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 5.7e-280 967.6 839 65.1
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 1.3e-279 966.5 838 64.0
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 3.2e-278 961.8 840 64.2
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 7.0e-278 960.7 842 63.3
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 2.0e-277 959.1 857 63.5
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 3.5e-277 958.4 825 65.0
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 3.9e-276 954.9 825 63.5
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 3.3e-275 951.8 828 63.3
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 7.3e-275 950.7 829 63.1
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.6e-274 949.5 847 64.1
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.6e-274 949.5 829 63.0
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 4.7e-274 948.0 834 63.8
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 6.1e-274 947.6 828 63.2
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 2.0e-272 942.6 848 64.0
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 1.3e-271 939.9 843 63.5
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 1.2e-269 933.3 838 63.0
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 2.0e-269 932.6 835 61.0
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 6.0e-269 931.0 843 63.2
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 1.1e-267 926.8 841 62.5
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 1.5e-267 926.4 830 62.8
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 1.8e-265 919.5 830 61.9
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 3.1e-265 918.7 824 63.8
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 3.7e-263 911.8 832 62.4
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 9.2e-262 907.1 830 61.7
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.2e-261 906.7 847 63.6
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 6.6e-260 901.0 839 61.4
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 1.1e-259 900.2 822 62.7
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 1.9e-259 899.4 826 60.8
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 2.5e-259 899.0 822 60.0
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 3.1e-257 892.1 832 59.4
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 5.8e-256 887.9 825 61.5
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 5.8e-256 887.9 855 60.2
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 3.7e-255 885.2 841 61.2
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 1.9e-254 882.9 846 59.7
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 5.4e-254 881.3 829 61.3
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 2.7e-253 879.0 828 58.0
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 1.3e-252 876.7 833 61.0
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 1.3e-252 876.7 833 61.0
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 8.6e-252 874.0 816 61.3
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 8.6e-252 874.0 832 59.6
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 4.3e-251 871.7 839 58.9
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 2.1e-250 869.4 843 59.9
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.1e-249 867.1 828 58.2
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 4.0e-249 865.1 841 58.5
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 1.5e-248 863.2 808 59.8
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 1.7e-247 859.8 832 60.6
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 1.7e-247 859.8 832 60.6
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 7.8e-245 850.9 833 58.8
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 1.6e-242 843.2 831 58.7
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 1.1e-241 840.5 928 53.8
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 2.4e-241 839.3 839 57.8
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 2.6e-240 835.9 867 55.9
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 4.2e-238 828.6 828 57.7
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 5.4e-238 828.2 857 55.1
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 1.3e-236 823.5 787 60.5
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 8.1e-234 814.3 879 55.6
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 2.3e-228 796.2 839 55.1
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 8.7e-228 794.3 832 56.2
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 7.4e-227 791.2 841 54.5
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 1.8e-225 786.6 849 54.4
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 1.5e-224 783.5 829 54.0
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 4.2e-222 775.4 829 58.5
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 2.7e-221 772.7 849 55.6
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 2.9e-215 752.7 677 61.9
Thhalv10018125m.g Eutrema salsugineum HOM05D004092 ORTHO05D005448 1.0e-212 744.2 680 61.6
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 3.0e-212 742.7 861 52.6
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 1.2e-208 730.7 788 53.8
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 5.0e-199 698.7 618 62.6
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 2.5e-198 696.4 819 50.5
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 6.7e-196 688.3 859 48.7
Phvul.L001940 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.3e-180 636.7 562 62.3
unitig_32.g11083 Utricularia gibba HOM05D004092 ORTHO05D005448 1.0e-164 584.7 594 55.6
Rhsim04G0123500 Rhododendron simsii HOM05D004092 ORTHO05D005448 5.2e-164 582.4 606 56.4
AagrBONN_evm.TU.Sc2ySwM_117.3368 Anthoceros agrestis HOM05D004092 ORTHO05D005448 9.8e-155 551.6 875 41.8
Cpa.g.sc4.30 Carica papaya HOM05D004092 ORTHO05D005448 2.9e-146 523.5 379 74.7
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 4.7e-141 506.1 835 41.4
CAN.G101.16 Capsicum annuum HOM05D004092 ORTHO05D005448 5.8e-139 499.2 456 61.4
Pp3c3_9760 Physcomitrium patens HOM05D004092 ORTHO05D005448 4.6e-136 489.6 875 38.7
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 6.0e-136 489.2 828 37.8
RhsimUnG0180500 Rhododendron simsii HOM05D004092 ORTHO05D005448 4.3e-134 483.0 435 62.8
FAN21G2977 Fragaria x ananassa HOM05D004092 ORTHO05D005448 7.6e-131 472.2 386 66.1
Eucgr.G02299 Eucalyptus grandis HOM05D004092 ORTHO05D005448 5.1e-119 433.0 409 58.9
Hma1.2p1_0334F.1_g128560 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 2.1e-117 427.6 447 58.2
CBR_g30814 Chara braunii HOM05D004092 ORTHO05D005448 4.6e-104 383.3 937 31.6
Rhsim04G0004800 Rhododendron simsii HOM05D004092 ORTHO05D005448 7.9e-96 355.9 303 62.4
Eucgr.F00934 Eucalyptus grandis HOM05D004092 ORTHO05D005448 6.3e-93 346.3 287 63.1
CAN.G101.17 Capsicum annuum HOM05D004092 ORTHO05D005448 4.5e-91 340.1 329 58.4
SHI21021 Sapria himalayana HOM05D004092 ORTHO05D005448 2.7e-88 330.9 405 48.1
Haze_01706 Corylus avellana HOM05D004092 ORTHO05D005448 6.1e-88 329.7 240 75.8
Haze_01704 Corylus avellana HOM05D004092 ORTHO05D005448 3.9e-87 327.0 279 69.2
Sopen00g013080 Solanum pennellii HOM05D004092 ORTHO05D005448 4.4e-86 323.6 223 73.1
Haze_01709 Corylus avellana HOM05D004092 ORTHO05D005448 1.3e-85 322.0 244 74.2
Sopen00g010230 Solanum pennellii HOM05D004092 ORTHO05D005448 6.3e-77 293.1 200 73.0
PGR138G0002 Punica granatum HOM05D004092 ORTHO05D005448 2.7e-72 277.7 265 64.2
Haze_01705 Corylus avellana HOM05D004092 ORTHO05D005448 1.3e-61 242.3 227 56.8
SHI21022 Sapria himalayana HOM05D004092 ORTHO05D005448 4.1e-60 237.3 196 67.3
MCO10G157 Micromonas commoda HOM05D004092 ORTHO05D005448 5.0e-58 230.3 935 25.2
unitig_32.g11084 Utricularia gibba HOM05D004092 ORTHO05D005448 1.1e-57 229.2 214 58.9
Lsat_1_v5_gn_2_21921 Lactuca sativa HOM05D004092 ORTHO05D005448 5.5e-57 226.9 152 73.0
Phvul.011G073301 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 3.4e-54 217.6 181 66.3
Rhsim04G0116800 Rhododendron simsii HOM05D005276 ORTHO05D006813 2.9e-45 188.0 219 55.7
Psat1g207400 Pisum sativum HOM05D004092 ORTHO05D005448 4.0e-39 167.5 172 58.1
Sopen00g012990 Solanum pennellii HOM05D004092 ORTHO05D005448 5.8e-38 163.7 154 62.3
Rhsim04G0004600 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.0e-34 152.9 143 56.6
SalBow7G2721 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.3e-34 152.5 146 56.8
BolC6t38166H Brassica oleracea HOM05D004092 ORTHO05D005448 7.3e-33 146.7 267 39.7
Cfa022337 Carpinus fangiana HOM05D004092 ORTHO05D005448 4.0e-31 141.0 661 25.9
PRCOL_00003431 Prasinoderma coloniale HOM05D004092 ORTHO05D005448 4.0e-31 141.0 625 26.1
C06p30050 Brassica napus HOM05D004092 ORTHO05D005448 1.2e-30 139.4 269 38.3
BcaC08g45374 Brassica carinata HOM05D004092 ORTHO05D005448 2.2e-29 135.2 276 37.0
Actinidia37125 Actinidia chinensis HOM05D004092 ORTHO05D005448 2.3e-26 125.2 108 61.1
Cpa.g.sc2160.2 Carica papaya HOM05D004092 ORTHO05D005448 2.3e-26 125.2 73 74.0
Cre16.g659600 Chlamydomonas reinhardtii HOM05D004092 ORTHO05D005448 2.3e-26 125.2 503 24.7
SalBow1G6550 Salvia bowleyana HOM05D004092 ORTHO05D005448 4.7e-24 117.5 171 40.9
BcaB02g07203 Brassica carinata HOM05D004092 ORTHO05D005448 2.0e-22 112.1 118 55.1
A07p27270 Brassica napus HOM05D004092 ORTHO05D005448 6.0e-19 100.5 195 44.6
Glyma.11G148802 Glycine max HOM05D004092 ORTHO05D016651 1.3e-18 99.4 82 62.2
BraA07t30370Z Brassica rapa HOM05D004092 ORTHO05D005448 1.7e-18 99.0 198 43.9
Actinidia37124 Actinidia chinensis HOM05D004092 ORTHO05D005448 3.9e-18 97.8 75 66.7
AL4G15030 Arabidopsis lyrata HOM05D001020 ORTHO05D001137 2.5e-17 95.1 173 48.0
QL04p079914 Quercus lobata HOM05D004092 ORTHO05D005448 6.9e-15 87.0 54 72.2
Sopen00g013090 Solanum pennellii HOM05D004092 ORTHO05D005448 6.9e-15 87.0 96 51.0
Rhsim04G0004900 Rhododendron simsii HOM05D004092 ORTHO05D005448 7.6e-14 83.6 55 70.9
Phvul.L001640 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.3e-13 82.8 73 53.4
ECA232G3953 Erigeron canadensis HOM05D015936 ORTHO05D022524 6.0e-11 73.9 65 56.9
Cfa024410 Carpinus fangiana HOM05D004142 ORTHO05D005411 9.9e-06 56.6 105 31.4


User provided reference genes

Program Settings