Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_07923 Corchorus olitorius HOM05D004054 ORTHO05D004945 0.0e+00 1661.4 878 100.0
Thecc.02G355300 Theobroma cacao HOM05D004054 ORTHO05D004945 0.0e+00 1387.5 850 85.4
Duzib268G1532 Durio zibethinus HOM05D004054 ORTHO05D004945 0.0e+00 1340.9 862 82.1
Gorai.013G077900 Gossypium raimondii HOM05D004054 ORTHO05D004945 0.0e+00 1293.1 856 79.0
Gohir.A13G052300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 0.0e+00 1292.3 859 78.6
Gohir.D13G068400 Gossypium hirsutum HOM05D004054 ORTHO05D004945 0.0e+00 1280.0 856 78.5
Duzib248G1634 Durio zibethinus HOM05D004054 ORTHO05D004945 0.0e+00 1211.4 858 77.2
Gorai.008G182900 Gossypium raimondii HOM05D004054 ORTHO05D004945 0.0e+00 1203.7 860 75.9
Gohir.D12G170300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 0.0e+00 1174.5 835 75.8
QL03p065666 Quercus lobata HOM05D004054 ORTHO05D004945 0.0e+00 1100.1 871 69.0
Ciclev10030693m.g Citrus clementina HOM05D004054 ORTHO05D004945 0.0e+00 1096.6 866 67.8
Cfa009037 Carpinus fangiana HOM05D004054 ORTHO05D004945 0.0e+00 1094.7 872 68.7
TAR362G0462 Trochodendron aralioides HOM05D004054 ORTHO05D004945 0.0e+00 1075.8 878 66.3
TWI36G0714 Tripterygium wilfordii HOM05D004054 ORTHO05D004945 8.0e-307 1057.0 860 67.9
MD13G1079000 Malus domestica HOM05D004054 ORTHO05D004945 1.1e-303 1046.6 843 67.6
Haze_12066 Corylus avellana HOM05D004054 ORTHO05D004945 1.4e-303 1046.2 975 61.1
Prupe.1G267800 Prunus persica HOM05D004054 ORTHO05D004945 5.9e-302 1040.8 864 66.6
GSVIVG01036940001 Vitis vinifera HOM05D004054 ORTHO05D004945 3.3e-300 1035.0 856 65.9
Actinidia05393 Actinidia chinensis HOM05D004054 ORTHO05D004945 1.9e-295 1019.2 867 63.7
RcHm_v2.0_Chr1g0353921 Rosa chinensis HOM05D004054 ORTHO05D004945 3.2e-295 1018.5 861 65.6
RcHm_v2.0_Chr4g0440641 Rosa chinensis HOM05D004054 ORTHO05D004945 1.0e-293 1013.4 833 66.7
Rhsim01G0215700 Rhododendron simsii HOM05D004054 ORTHO05D004945 5.6e-292 1007.7 872 62.7
RcHm_v2.0_Chr1g0331881 Rosa chinensis HOM05D004054 ORTHO05D004945 4.7e-291 1004.6 832 65.9
ClCG05G024580 Citrullus lanatus HOM05D004054 ORTHO05D004945 6.2e-291 1004.2 882 63.5
FAN12G3951 Fragaria x ananassa HOM05D004054 ORTHO05D004945 2.7e-286 988.8 868 63.9
Atru.chr11.1851 Acer truncatum HOM05D004054 ORTHO05D004945 7.8e-286 987.3 889 63.2
FvH4_4g31960 Fragaria vesca HOM05D004054 ORTHO05D004945 2.3e-285 985.7 868 63.5
CsaV3_5G032370 Cucumis sativus L. HOM05D004054 ORTHO05D004945 5.1e-285 984.6 864 63.8
FAN22G1878 Fragaria x ananassa HOM05D004054 ORTHO05D004945 8.6e-285 983.8 877 63.3
Potri.010G033900 Populus trichocarpa HOM05D004054 ORTHO05D004945 8.6e-285 983.8 864 65.5
FAN17G1509 Fragaria x ananassa HOM05D004054 ORTHO05D004945 2.8e-283 978.8 867 63.3
MD16G1078700 Malus domestica HOM05D004054 ORTHO05D004945 2.8e-283 978.8 767 69.4
FAN07G1439 Fragaria x ananassa HOM05D004054 ORTHO05D004945 3.1e-282 975.3 845 64.4
GSVIVG01020074001 Vitis vinifera HOM05D004054 ORTHO05D004945 4.9e-280 968.0 880 62.4
Sed0026408 Sechium edule HOM05D004054 ORTHO05D004945 1.4e-279 966.5 862 62.6
Glyma.18G126000 Glycine max HOM05D004054 ORTHO05D004945 1.9e-279 966.1 832 64.1
MBI11_g00106_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 1.9e-279 966.1 881 59.7
Eucgr.B03410 Eucalyptus grandis HOM05D004054 ORTHO05D004945 7.1e-279 964.1 868 63.1
Ca_22853_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 3.5e-278 961.8 831 62.3
Glyma.08G296300 Glycine max HOM05D004054 ORTHO05D004945 1.0e-277 960.3 871 62.7
MBI17_g39912_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 5.1e-277 958.0 859 60.4
Lj4g0012636 Lotus japonicus HOM05D004054 ORTHO05D004945 2.1e-275 952.6 831 63.4
Aqoxy5G00175 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 8.1e-275 950.7 875 61.3
CSS0048330 Camellia sinensis var. sinensis HOM05D004054 ORTHO05D004945 4.9e-272 941.4 847 61.7
PGR102G2139 Punica granatum HOM05D004054 ORTHO05D004945 1.1e-271 940.3 870 60.9
Sabra10G0030700 Salix brachista HOM05D004054 ORTHO05D004945 1.4e-271 939.9 923 60.3
Phvul.003G069800 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 5.4e-271 937.9 838 62.3
Thhalv10020058m.g Eutrema salsugineum HOM05D004054 ORTHO05D004945 1.7e-269 932.9 861 59.8
TPR.G33257 Trifolium pratense HOM05D004054 ORTHO05D004945 1.3e-267 926.8 828 62.0
VMungo0251G1664 Vigna mungo HOM05D004054 ORTHO05D004945 2.8e-267 925.6 875 59.8
PSO832G3945 Papaver somniferum HOM05D004054 ORTHO05D004945 1.4e-266 923.3 874 59.8
MELO3C012068.2 Cucumis melo HOM05D004054 ORTHO05D004945 2.4e-266 922.5 841 61.4
Carub.0003s1763 Capsella rubella HOM05D004054 ORTHO05D004945 1.5e-265 919.8 863 58.7
vmacro07429 Vaccinium macrocarpon HOM05D004054 ORTHO05D004945 1.3e-264 916.8 950 56.6
Medtr8g469270 Medicago truncatula HOM05D004054 ORTHO05D004945 6.4e-264 914.4 874 59.3
arahy.Tifrunner.gnm1.ann1.K6PP8H Arachis hypogaea HOM05D004054 ORTHO05D004945 8.4e-264 914.1 872 60.2
Peaxi162Scf00209g00326 Petunia axillaris HOM05D004054 ORTHO05D004945 8.4e-264 914.1 894 57.9
Hma1.2p1_1545F.1_g289900 Hydrangea macrophylla HOM05D004054 ORTHO05D004945 9.3e-263 910.6 754 66.3
Lalb_Chr16g0392581 Lupinus albus HOM05D004054 ORTHO05D004945 2.1e-262 909.4 854 60.3
Sopen05g002990 Solanum pennellii HOM05D004054 ORTHO05D004945 2.7e-262 909.1 865 59.2
AL3G31070 Arabidopsis lyrata HOM05D004054 ORTHO05D004945 1.8e-261 906.4 864 58.0
AT3G17900 Arabidopsis thaliana HOM05D004054 ORTHO05D004945 3.9e-261 905.2 864 57.9
Sp3g16020 Schrenkiella parvula HOM05D004054 ORTHO05D004945 1.1e-260 903.7 863 58.1
Manes.05G096500 Manihot esculenta HOM05D004054 ORTHO05D004945 1.9e-260 902.9 738 68.7
Psat4g132120 Pisum sativum HOM05D004054 ORTHO05D004945 1.9e-260 902.9 869 58.7
Nitab4.5_0009649g0020 Nicotiana tabacum HOM05D004054 ORTHO05D004945 2.8e-259 899.0 838 59.7
Dinv24955 Davidia involucrata HOM05D004054 ORTHO05D004945 1.4e-258 896.7 721 67.3
THA.LOC104820344 Tarenaya hassleriana HOM05D004054 ORTHO05D004945 1.8e-258 896.3 863 58.7
CARHR093230 Cardamine hirsuta HOM05D004054 ORTHO05D004945 1.1e-255 887.1 860 56.9
PSO764G0096 Papaver somniferum HOM05D004054 ORTHO05D004945 1.4e-255 886.7 874 58.0
Cc11_g13490 Coffea canephora HOM05D004054 ORTHO05D004945 2.4e-255 885.9 870 57.6
Sc11g0001680 Simmondsia chinensis HOM05D004054 ORTHO05D004945 1.6e-254 883.2 862 57.9
Lsat_1_v5_gn_8_54080 Lactuca sativa HOM05D004054 ORTHO05D004945 2.1e-254 882.9 864 56.8
Nitab4.5_0008717g0030 Nicotiana tabacum HOM05D004054 ORTHO05D004945 6.9e-250 867.8 840 58.3
Migut.L01344 Erythranthe guttata HOM05D004054 ORTHO05D004945 5.8e-249 864.8 867 57.8
DCAR_027382 Daucus carota HOM05D004054 ORTHO05D004945 7.6e-249 864.4 863 56.4
Aa31LG8G4770 Aethionema arabicum HOM05D004054 ORTHO05D004945 1.2e-246 857.1 907 54.2
BcaB04g20809 Brassica carinata HOM05D004054 ORTHO05D004945 3.5e-246 855.5 862 56.5
Oeu011693.1 Olea europaea HOM05D004054 ORTHO05D004945 1.1e-244 850.5 784 61.0
A01p36490 Brassica napus HOM05D004054 ORTHO05D004945 3.7e-243 845.5 817 57.8
SalBow2G0733 Salvia bowleyana HOM05D004054 ORTHO05D004945 3.1e-242 842.4 949 53.0
C01p46250 Brassica napus HOM05D004054 ORTHO05D004945 4.5e-241 838.6 865 55.1
BolC1t04586H Brassica oleracea HOM05D004054 ORTHO05D004945 4.5e-241 838.6 865 55.1
BraA03t13202Z Brassica rapa HOM05D004054 ORTHO05D004945 1.0e-240 837.4 857 56.1
C03p49280 Brassica napus HOM05D004054 ORTHO05D004945 2.2e-240 836.3 856 56.2
MSTRG.671 Avicennia marina HOM05D004054 ORTHO05D004945 2.9e-240 835.9 868 56.0
BcaC09g48754 Brassica carinata HOM05D004054 ORTHO05D004945 3.8e-240 835.5 824 56.6
SGA_v2.0_scaffold302G47866 Striga asiatica HOM05D004054 ORTHO05D004945 1.1e-239 833.9 867 55.6
ECA247G4086 Erigeron canadensis HOM05D004054 ORTHO05D004945 4.2e-239 832.0 856 56.3
BolC3t17216H Brassica oleracea HOM05D004054 ORTHO05D004945 7.2e-239 831.2 856 55.8
BraA01t03713Z Brassica rapa HOM05D004054 ORTHO05D004945 1.2e-238 830.5 821 57.5
Nn3g19739 Nelumbo nucifera HOM05D004054 ORTHO05D004945 4.3e-236 822.0 726 61.6
HanXRQChr12g0369801 Helianthus annuus HOM05D004054 ORTHO05D004945 4.8e-235 818.5 857 55.4
Glyma.02G021900 Glycine max HOM05D004054 ORTHO05D004945 9.1e-234 814.3 861 55.1
BcaB04g18970 Brassica carinata HOM05D004054 ORTHO05D004945 1.5e-233 813.5 854 55.0
Lalb_Chr09g0335271 Lupinus albus HOM05D004054 ORTHO05D004945 4.5e-233 812.0 788 59.1
Psat2g124400 Pisum sativum HOM05D004054 ORTHO05D004945 7.7e-233 811.2 776 57.5
Oeu028539.1 Olea europaea HOM05D004054 ORTHO05D004945 6.5e-232 808.1 900 53.9
Hund25271 Selenicereus undatus HOM05D004054 ORTHO05D004945 6.5e-232 808.1 837 55.7
AUR62026447 Chenopodium quinoa HOM05D004054 ORTHO05D004945 1.1e-231 807.4 854 55.9
SalBow2G2854 Salvia bowleyana HOM05D004054 ORTHO05D004945 3.2e-231 805.8 1029 48.8
Ca_04741_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 2.3e-229 799.7 837 55.0
Gohir.A12G166800 Gossypium hirsutum HOM05D004054 ORTHO05D004945 4.5e-225 785.4 546 77.5
AUR62026254 Chenopodium quinoa HOM05D004054 ORTHO05D004945 7.7e-225 784.6 863 55.0
BcaC01g03722 Brassica carinata HOM05D004054 ORTHO05D004945 1.3e-219 767.3 859 54.1
ATR0564G248 Amborella trichopoda HOM05D004054 ORTHO05D004945 3.1e-218 762.7 882 52.3
Medtr5g038440 Medicago truncatula HOM05D004054 ORTHO05D004945 4.5e-217 758.8 843 52.8
Cpa.g.sc5.276 Carica papaya HOM05D004054 ORTHO05D004945 8.5e-216 754.6 549 74.5
A03p40440 Brassica napus HOM05D004054 ORTHO05D004945 4.7e-214 748.8 731 58.4
HPP92_011033 Vanilla planifolia HOM05D004054 ORTHO05D004945 9.7e-212 741.1 855 50.5
CDE09G0195 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 1.4e-210 737.3 883 49.7
Lj2g0020807 Lotus japonicus HOM05D004054 ORTHO05D004945 1.8e-210 736.9 722 58.2
Lalb_Chr17g0340361 Lupinus albus HOM05D004054 ORTHO05D004945 2.4e-210 736.5 807 54.4
TPR.G13762 Trifolium pratense HOM05D004054 ORTHO05D004945 2.9e-208 729.6 811 52.2
Solyc05g007030.4 Solanum lycopersicum HOM05D004054 ORTHO05D004945 3.4e-204 716.1 594 64.6
arahy.Tifrunner.gnm1.ann1.S53SYG Arachis hypogaea HOM05D004054 ORTHO05D004945 2.8e-203 713.0 855 49.7
Hund05913 Selenicereus undatus HOM05D004054 ORTHO05D004945 2.7e-201 706.4 782 53.5
EL10Ac6g13147 Beta vulgaris HOM05D004054 ORTHO05D004945 1.0e-197 694.5 823 52.2
arahy.Tifrunner.gnm1.ann1.B2D650 Arachis hypogaea HOM05D004054 ORTHO05D004945 1.2e-188 664.5 855 47.5
Zm00001eb409770 Zea mays HOM05D004054 ORTHO05D004945 1.1e-186 657.9 869 47.0
SEGI_39580 Sequoiadendron giganteum HOM05D004054 ORTHO05D004945 1.6e-182 644.0 916 44.0
Nn1g02896 Nelumbo nucifera HOM05D004054 ORTHO05D004945 1.4e-170 604.4 875 44.5
VMungo1215G1372 Vigna mungo HOM05D004054 ORTHO05D004945 7.8e-169 598.6 1116 39.0
CiPaw.06G080700 Carya illinoinensis HOM05D004054 ORTHO05D004945 1.9e-162 577.4 446 69.7
unitig_22.g6528 Utricularia gibba HOM05D004054 ORTHO05D004945 1.5e-156 557.8 870 43.9
Lsat_1_v5_gn_4_9281 Lactuca sativa HOM05D004054 ORTHO05D004945 9.9e-156 555.1 774 45.9
CDE02G2379 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 1.5e-151 541.2 784 42.0
ECA234G1496 Erigeron canadensis HOM05D004054 ORTHO05D004945 8.1e-150 535.4 832 42.9
Phvul.002G066700 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 2.0e-148 530.8 574 53.8
Ah.03g132020 Amaranthus hybridus HOM05D004054 ORTHO05D004945 6.0e-145 519.2 541 56.7
HanXRQChr03g0092771 Helianthus annuus HOM05D004054 ORTHO05D004945 1.0e-144 518.5 752 44.3
Mapoly0224s0002 Marchantia polymorpha HOM05D004054 ORTHO05D004945 3.9e-128 463.4 852 37.6
Zm00001eb066230 Zea mays HOM05D004054 ORTHO05D004945 5.9e-124 449.5 568 49.3
CiPaw.06G080600 Carya illinoinensis HOM05D004054 ORTHO05D004945 5.0e-107 393.3 368 60.9
unitig_8.g3947 Utricularia gibba HOM05D004054 ORTHO05D004945 3.3e-103 380.6 544 43.8
Pp3c16_680 Physcomitrium patens HOM05D004054 ORTHO05D004945 1.4e-101 375.2 794 34.5
SMO119G0368 Selaginella moellendorffii HOM05D004054 ORTHO05D004945 5.3e-93 346.7 632 35.6
Cpa.g.sc5.277 Carica papaya HOM05D004054 ORTHO05D004945 1.7e-91 341.7 318 60.4
AagrBONN_evm.TU.Sc2ySwM_228.4114 Anthoceros agrestis HOM05D004054 ORTHO05D004945 1.5e-90 338.6 642 34.3
Potri.008G194566 Populus trichocarpa HOM05D004054 ORTHO05D004945 6.8e-88 329.7 279 68.1
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 9.8e-87 325.9 436 47.9
Gohir.A12G166900 Gossypium hirsutum HOM05D004054 ORTHO05D004945 4.8e-86 323.6 249 70.7
Phvul.002G066500 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 2.5e-66 258.1 278 55.0
Potri.008G194632 Populus trichocarpa HOM05D004054 ORTHO05D004945 1.1e-58 232.6 195 68.7
MSTRG.2359 Avicennia marina HOM05D004054 ORTHO05D004945 8.7e-43 179.9 169 58.0
C02p33030 Brassica napus HOM05D004054 ORTHO05D004945 1.2e-39 169.5 392 34.9
C03p36410 Brassica napus HOM05D004054 ORTHO05D004945 4.6e-36 157.5 392 34.9
BolC3t15954H Brassica oleracea HOM05D004054 ORTHO05D004945 4.6e-36 157.5 392 34.9
RcHm_v2.0_Chr1g0331861 Rosa chinensis HOM05D004054 ORTHO05D004945 2.2e-30 138.7 138 56.5
A05p04500 Brassica napus HOM05D004054 ORTHO05D004945 3.2e-29 134.8 185 45.9
C03p62480 Brassica napus HOM05D004054 ORTHO05D004945 3.2e-29 134.8 185 45.9
CBR_g39858 Chara braunii HOM05D004054 ORTHO05D009492 3.4e-23 114.8 331 29.9
unitig_8.g3946 Utricularia gibba HOM05D004054 ORTHO05D004945 2.9e-22 111.7 178 40.4
C06p17170 Brassica napus HOM05D004054 ORTHO05D004945 7.1e-21 107.1 178 41.0
C08p43480 Brassica napus HOM05D004054 ORTHO05D004945 9.3e-21 106.7 131 47.3
A01p41860 Brassica napus HOM05D004054 ORTHO05D004945 1.8e-19 102.4 108 53.7
CAN.G793.43 Capsicum annuum HOM05D004054 ORTHO05D004945 5.1e-19 100.9 171 42.1
BolC3t18505H Brassica oleracea HOM05D004054 ORTHO05D004945 7.4e-18 97.1 203 36.9
PGSC0003DMG402017622 Solanum tuberosum HOM05D004054 ORTHO05D004945 1.1e-16 93.2 101 51.5
Lalb_Chr17g0340371 Lupinus albus HOM05D004054 ORTHO05D004945 1.4e-16 92.8 60 78.3
BcaC08g44394 Brassica carinata HOM05D004054 ORTHO05D004945 4.9e-14 84.3 174 36.8
Oeu011694.1 Olea europaea HOM05D004054 ORTHO05D049449 3.0e-11 75.1 98 48.0
A06p30220 Brassica napus HOM05D003604 ORTHO05D004110 6.7e-11 73.9 77 51.9
Lsat_1_v5_gn_7_73540 Lactuca sativa HOM05D004054 ORTHO05D004945 4.3e-10 71.2 64 54.7
Lsat_1_v5_gn_3_52120 Lactuca sativa HOM05D004054 ORTHO05D004945 5.7e-10 70.9 64 51.6
MBI09_g47007_MAGBIO Magnolia biondii HOM05D003023 ORTHO05D018021 6.3e-09 67.4 98 40.8
C06p10280 Brassica napus HOM05D011797 ORTHO05D012335 8.2e-09 67.0 37 89.2
Aqoxy4G02344 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 3.1e-08 65.1 81 49.4
CBR_g39853 Chara braunii HOM05D000019 ORTHO05D000002 5.3e-08 64.3 47 63.8
Lsat_1_v5_gn_5_60100 Lactuca sativa HOM05D004054 ORTHO05D036438 1.0e-06 60.1 86 45.3


User provided reference genes

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