Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_07852 Corchorus olitorius HOM05D004290 ORTHO05D005025 3.5e-82 308.1 145 100.0
Duzib251G0274 Durio zibethinus HOM05D004290 ORTHO05D005025 1.9e-67 259.2 143 85.3
Thecc.02G363400 Theobroma cacao HOM05D004290 ORTHO05D005025 4.1e-67 258.1 133 89.5
QL03p037189 Quercus lobata HOM05D004290 ORTHO05D005025 1.4e-62 243.0 137 79.6
RcHm_v2.0_Chr4g0436191 Rosa chinensis HOM05D004290 ORTHO05D005025 8.9e-62 240.4 140 77.1
CiPaw.05G172800 Carya illinoinensis HOM05D004290 ORTHO05D005025 9.9e-61 236.9 128 84.4
CiPaw.05G172700 Carya illinoinensis HOM05D004290 ORTHO05D005025 1.3e-60 236.5 128 83.6
Haze_11793 Corylus avellana HOM05D004290 ORTHO05D005025 1.3e-60 236.5 153 75.2
Manes.06G074500 Manihot esculenta HOM05D004290 ORTHO05D005025 1.7e-60 236.1 140 76.4
Cfa008781 Carpinus fangiana HOM05D004290 ORTHO05D005025 4.9e-60 234.6 153 73.9
Gohir.A13G071200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 1.4e-59 233.0 133 81.2
Nn4g23673 Nelumbo nucifera HOM05D004290 ORTHO05D005025 1.9e-59 232.6 133 80.5
Gohir.D13G069200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 3.2e-59 231.9 133 80.5
Gorai.013G079300 Gossypium raimondii HOM05D004290 ORTHO05D005025 3.2e-59 231.9 133 80.5
Ciclev10033020m.g Citrus clementina HOM05D004290 ORTHO05D005025 4.1e-59 231.5 131 80.2
FvH4_4g28340 Fragaria vesca HOM05D004290 ORTHO05D005025 1.6e-58 229.6 133 77.4
TWI31G0716 Tripterygium wilfordii HOM05D004290 ORTHO05D005025 1.6e-58 229.6 135 77.0
FAN12G2228 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.5e-58 228.4 133 76.7
FAN22G0640 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.6e-58 228.0 133 76.7
Potri.008G114300 Populus trichocarpa HOM05D004290 ORTHO05D005025 6.0e-58 227.6 134 78.4
Sabra08G0086600 Salix brachista HOM05D004290 ORTHO05D005025 7.8e-58 227.3 133 76.7
MELO3C005349.2 Cucumis melo HOM05D004290 ORTHO05D005025 1.0e-57 226.9 146 71.9
FAN17G1675 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.3e-57 226.5 133 76.7
Eucgr.B03066 Eucalyptus grandis HOM05D004290 ORTHO05D005025 1.7e-57 226.1 143 73.4
CANSAT64G1327 Cannabis sativa HOM05D004290 ORTHO05D005025 2.3e-57 225.7 130 75.4
Aa31sc79G10 Aethionema arabicum HOM05D004290 ORTHO05D005025 8.6e-57 223.8 136 77.2
Hund05546 Selenicereus undatus HOM05D004290 ORTHO05D005025 1.1e-56 223.4 131 76.3
EL10Ac6g14527 Beta vulgaris HOM05D004290 ORTHO05D005025 2.5e-56 222.2 127 76.4
Prupe.1G302800 Prunus persica HOM05D004290 ORTHO05D005025 7.3e-56 220.7 139 73.4
CsaV3_5G028890 Cucumis sativus L. HOM05D004290 ORTHO05D005025 9.5e-56 220.3 146 68.5
MD13G1049100 Malus domestica HOM05D004290 ORTHO05D005025 1.2e-55 219.9 132 76.5
Lj2g0025619 Lotus japonicus HOM05D004290 ORTHO05D005025 2.1e-55 219.2 142 73.9
Sp5g23870 Schrenkiella parvula HOM05D004290 ORTHO05D005025 2.8e-55 218.8 132 73.5
arahy.Tifrunner.gnm1.ann1.IBNT6Z Arachis hypogaea HOM05D004290 ORTHO05D005025 4.7e-55 218.0 131 77.1
arahy.Tifrunner.gnm1.ann1.U655LF Arachis hypogaea HOM05D004290 ORTHO05D005025 4.7e-55 218.0 131 77.1
Ah.02g127350 Amaranthus hybridus HOM05D004290 ORTHO05D005025 6.2e-55 217.6 129 75.2
CARHR061580 Cardamine hirsuta HOM05D004290 ORTHO05D005025 6.2e-55 217.6 132 72.0
QL03p036461 Quercus lobata HOM05D004290 ORTHO05D005025 1.8e-54 216.1 129 75.2
Potri.008G114400 Populus trichocarpa HOM05D004290 ORTHO05D005025 2.4e-54 215.7 143 69.2
BcaB05g24409 Brassica carinata HOM05D004290 ORTHO05D005025 3.1e-54 215.3 131 74.0
A02p15320 Brassica napus HOM05D004290 ORTHO05D005025 3.1e-54 215.3 132 75.0
PGR102G2310 Punica granatum HOM05D004290 ORTHO05D005025 3.1e-54 215.3 135 74.8
C02p25170 Brassica napus HOM05D004290 ORTHO05D005025 4.0e-54 214.9 132 75.0
Phvul.003G024900 Phaseolus vulgaris HOM05D004290 ORTHO05D005025 4.0e-54 214.9 132 72.7
Glyma.01G090900 Glycine max HOM05D004290 ORTHO05D005025 5.2e-54 214.5 143 71.3
Psat2g074600 Pisum sativum HOM05D004290 ORTHO05D005025 5.2e-54 214.5 143 69.9
BraA02t06593Z Brassica rapa HOM05D004290 ORTHO05D005025 1.2e-53 213.4 132 74.2
Cc11_g10800 Coffea canephora HOM05D004290 ORTHO05D005025 1.2e-53 213.4 143 69.2
Prupe.1G303000 Prunus persica HOM05D004290 ORTHO05D005025 1.2e-53 213.4 133 71.4
Sed0004732 Sechium edule HOM05D004290 ORTHO05D005025 1.2e-53 213.4 135 72.6
C04p37630 Brassica napus HOM05D004290 ORTHO05D005025 1.5e-53 213.0 132 74.2
Sc04g0006830 Simmondsia chinensis HOM05D004290 ORTHO05D005025 1.5e-53 213.0 138 69.6
Lj3A1022T62 Lonicera japonica HOM05D004290 ORTHO05D005025 2.0e-53 212.6 133 72.2
BolC2t08596H Brassica oleracea HOM05D004290 ORTHO05D005025 3.4e-53 211.8 132 74.2
AT1G68760 Arabidopsis thaliana HOM05D004290 ORTHO05D005025 4.4e-53 211.5 132 69.7
Dinv16527 Davidia involucrata HOM05D004290 ORTHO05D005025 7.6e-53 210.7 128 74.2
AL2G27690 Arabidopsis lyrata HOM05D004290 ORTHO05D005025 1.7e-52 209.5 131 70.2
ClCG01G005800 Citrullus lanatus HOM05D004290 ORTHO05D005025 1.7e-52 209.5 181 57.5
Thhalv10019297m.g Eutrema salsugineum HOM05D004290 ORTHO05D005025 2.2e-52 209.1 133 72.2
AUR62007751 Chenopodium quinoa HOM05D004290 ORTHO05D005025 3.8e-52 208.4 131 73.3
MBI10_g35795_MAGBIO Magnolia biondii HOM05D004290 ORTHO05D005025 3.8e-52 208.4 129 70.5
Aqoxy3G03864 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 6.4e-52 207.6 129 76.0
THA.LOC104821971 Tarenaya hassleriana HOM05D004290 ORTHO05D005025 6.4e-52 207.6 129 76.0
RcHm_v2.0_Chr4g0436181 Rosa chinensis HOM05D004290 ORTHO05D005025 1.4e-51 206.5 131 71.0
RcHm_v2.0_Chr2g0142071 Rosa chinensis HOM05D004290 ORTHO05D005025 1.9e-51 206.1 130 70.0
RcHm_v2.0_Chr2g0142081 Rosa chinensis HOM05D004290 ORTHO05D005025 1.9e-51 206.1 130 70.0
RcHm_v2.0_Chr2g0142111 Rosa chinensis HOM05D004290 ORTHO05D005025 1.9e-51 206.1 130 70.0
MELO3C012202.2 Cucumis melo HOM05D004290 ORTHO05D005025 3.2e-51 205.3 134 64.9
Medtr5g062660 Medicago truncatula HOM05D004290 ORTHO05D005025 4.1e-51 204.9 141 68.1
GSVIVG01011978001 Vitis vinifera HOM05D004290 ORTHO05D005025 4.1e-51 204.9 129 73.6
AUR62002942 Chenopodium quinoa HOM05D004290 ORTHO05D005025 7.1e-51 204.1 131 72.5
Ca_19617_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 7.1e-51 204.1 143 67.8
Ca_30768_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 7.1e-51 204.1 143 67.8
Dinv05808 Davidia involucrata HOM05D000436 ORTHO05D005025 7.1e-51 204.1 126 72.2
ClCG00G001430 Citrullus lanatus HOM05D004290 ORTHO05D005025 1.2e-50 203.4 137 64.2
ClCG05G023160 Citrullus lanatus HOM05D004290 ORTHO05D005025 1.2e-50 203.4 137 64.2
RcHm_v2.0_Chr2g0142121 Rosa chinensis HOM05D004290 ORTHO05D005025 1.2e-50 203.4 130 68.5
Cc11_g10790 Coffea canephora HOM05D004290 ORTHO05D005025 1.6e-50 203.0 140 69.3
MD13G1048900 Malus domestica HOM05D004290 ORTHO05D005025 1.6e-50 203.0 131 71.0
TPR.G33571 Trifolium pratense HOM05D004290 ORTHO05D005025 1.6e-50 203.0 135 72.6
PSO478G2631 Papaver somniferum HOM05D004290 ORTHO05D005025 4.6e-50 201.4 131 68.7
ClCG05G023170 Citrullus lanatus HOM05D004290 ORTHO05D005025 6.0e-50 201.1 140 60.7
Carub.0002s1532 Capsella rubella HOM05D004290 ORTHO05D005025 7.8e-50 200.7 127 68.5
CsaV3_5G033840 Cucumis sativus L. HOM05D004290 ORTHO05D005025 7.8e-50 200.7 142 61.3
Prupe.1G302900 Prunus persica HOM05D004290 ORTHO05D005025 1.0e-49 200.3 135 71.1
Sed0009817 Sechium edule HOM05D004290 ORTHO05D005025 1.0e-49 200.3 136 64.0
BcaC03g14984 Brassica carinata HOM05D004290 ORTHO05D005025 2.3e-49 199.1 131 71.0
Migut.L01112 Erythranthe guttata HOM05D004290 ORTHO05D005025 2.3e-49 199.1 133 68.4
Lalb_Chr04g0255051 Lupinus albus HOM05D004290 ORTHO05D005025 5.1e-49 198.0 141 68.8
RcHm_v2.0_Chr6g0244161 Rosa chinensis HOM05D004290 ORTHO05D005025 6.6e-49 197.6 132 69.7
Aqoxy3G03865 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 8.7e-49 197.2 135 63.7
Nitab4.5_0013408g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 1.1e-48 196.8 129 70.5
HanXRQChr08g0214461 Helianthus annuus HOM05D004290 ORTHO05D005025 1.9e-48 196.1 131 65.6
MD16G1050200 Malus domestica HOM05D004290 ORTHO05D005025 3.3e-48 195.3 131 70.2
DCAR_026707 Daucus carota HOM05D004290 ORTHO05D005025 4.3e-48 194.9 140 64.3
FvH4_6g24180 Fragaria vesca HOM05D004290 ORTHO05D005025 4.3e-48 194.9 137 65.0
FAN14G4265 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.3e-48 194.9 137 65.0
FvH4_4g28310 Fragaria vesca HOM05D004290 ORTHO05D005025 7.3e-48 194.1 129 65.1
FAN12G0523 Fragaria x ananassa HOM05D004290 ORTHO05D005025 7.3e-48 194.1 129 65.1
FAN09G0247 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.2e-47 193.4 131 67.2
SalBow8G1203 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.6e-47 193.0 126 69.0
SalBow8G5193 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.6e-47 193.0 126 69.0
SGA_v2.0_scaffold14G06801 Striga asiatica HOM05D004290 ORTHO05D005025 1.6e-47 193.0 131 67.2
MSTRG.7697 Avicennia marina HOM05D004290 ORTHO05D005025 2.8e-47 192.2 131 65.6
Nitab4.5_0001178g0080 Nicotiana tabacum HOM05D004290 ORTHO05D005025 2.8e-47 192.2 129 69.0
ATR1147G043 Amborella trichopoda HOM05D004290 ORTHO05D005025 3.6e-47 191.8 131 63.4
Solyc05g010015.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 3.6e-47 191.8 134 65.7
SGA_v2.0_scaffold14G06802 Striga asiatica HOM05D004290 ORTHO05D005025 3.6e-47 191.8 131 67.9
DCAR_023699 Daucus carota HOM05D004290 ORTHO05D005025 1.4e-46 189.9 129 64.3
FAN09G2488 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.4e-46 189.9 132 67.4
Sopen05g005830 Solanum pennellii HOM05D004290 ORTHO05D005025 4.0e-46 188.3 134 64.2
Peaxi162Scf00118g01310 Petunia axillaris HOM05D004290 ORTHO05D005025 2.0e-45 186.0 142 58.5
FAN07G1902 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.4e-45 185.3 132 64.4
FAN12G2396 Fragaria x ananassa HOM05D004290 ORTHO05D005025 5.8e-45 184.5 132 64.4
FvH4_4g28300 Fragaria vesca HOM05D004290 ORTHO05D005025 9.9e-45 183.7 132 64.4
HPP92_021836 Vanilla planifolia HOM05D004290 ORTHO05D005025 9.9e-45 183.7 139 59.0
DCAR_017507 Daucus carota HOM05D004290 ORTHO05D005025 2.2e-44 182.6 129 61.2
DCAR_026708 Daucus carota HOM05D004290 ORTHO05D005025 2.2e-44 182.6 129 61.2
ECA233G1907 Erigeron canadensis HOM05D004290 ORTHO05D005025 1.1e-43 180.3 127 62.2
MD16G1050100 Malus domestica HOM05D004290 ORTHO05D005025 1.1e-43 180.3 141 60.3
Lsat_1_v5_gn_8_37520 Lactuca sativa HOM05D004290 ORTHO05D005025 1.4e-43 179.9 122 65.6
Pp3c20_17780 Physcomitrium patens HOM05D004290 ORTHO05D005025 2.4e-43 179.1 129 58.9
RcHm_v2.0_Chr4g0436151 Rosa chinensis HOM05D004290 ORTHO05D005025 7.1e-43 177.6 140 62.1
CDE10G0275 Ceratophyllum demersum HOM05D004290 ORTHO05D005025 9.3e-43 177.2 138 60.9
SalBow8G3034 Salvia bowleyana HOM05D004290 ORTHO05D005025 2.7e-42 175.6 130 62.3
QL03p036408 Quercus lobata HOM05D004290 ORTHO05D005025 1.1e-40 170.2 93 77.4
Actinidia14836 Actinidia chinensis HOM05D000436 ORTHO05D000678 1.5e-40 169.9 112 73.2
HanXRQChr16g0528791 Helianthus annuus HOM05D004290 ORTHO05D005025 1.9e-40 169.5 130 62.3
ECA234G2024 Erigeron canadensis HOM05D004290 ORTHO05D005025 3.3e-40 168.7 134 58.2
SalBow8G2020 Salvia bowleyana HOM05D004290 ORTHO05D005025 4.3e-40 168.3 130 60.8
PGSC0003DMG400030259 Solanum tuberosum HOM05D004290 ORTHO05D005025 5.6e-40 167.9 121 62.0
Solyc03g043860.2 Solanum lycopersicum HOM05D004290 ORTHO05D005025 9.6e-40 167.2 121 61.2
Prupe.1G303100 Prunus persica HOM05D004290 ORTHO05D005025 2.1e-39 166.0 134 59.7
HanXRQChr16g0528801 Helianthus annuus HOM05D004290 ORTHO05D005025 2.8e-39 165.6 128 58.6
CAN.G184.70 Capsicum annuum HOM05D004290 ORTHO05D005025 8.1e-39 164.1 113 69.9
FAN22G2200 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.1e-38 163.7 195 43.1
Mapoly0059s0094 Marchantia polymorpha HOM05D004290 ORTHO05D005025 1.4e-38 163.3 133 49.6
AagrBONN_evm.TU.Sc2ySwM_344.2294 Anthoceros agrestis HOM05D004290 ORTHO05D005025 1.8e-38 162.9 131 55.7
CSS0026618 Camellia sinensis var. sinensis HOM05D004290 ORTHO05D005025 2.4e-38 162.5 144 55.6
Lsat_1_v5_gn_4_17281 Lactuca sativa HOM05D004290 ORTHO05D005025 3.1e-38 162.2 130 60.8
Prupe.1G300800 Prunus persica HOM05D004290 ORTHO05D005025 5.3e-38 161.4 132 59.1
unitig_744.g24286 Utricularia gibba HOM05D004290 ORTHO05D005025 5.8e-37 157.9 126 57.1
Peaxi162Scf00367g00519 Petunia axillaris HOM05D004290 ORTHO05D005025 7.6e-37 157.5 133 59.4
Oeu044394.1 Olea europaea HOM05D004290 ORTHO05D005025 2.2e-36 156.0 130 58.5
CBR_g26184 Chara braunii HOM05D004290 ORTHO05D005025 8.4e-36 154.1 131 51.9
ATR1147G035 Amborella trichopoda HOM05D004290 ORTHO05D005025 1.1e-32 143.7 144 47.9
MSTRG.13496 Avicennia marina HOM05D004290 ORTHO05D005025 4.3e-32 141.7 130 52.3
Sopen03g007670 Solanum pennellii HOM05D004290 ORTHO05D005025 2.1e-31 139.4 121 54.5
FAN09G1140 Fragaria x ananassa HOM05D005343 ORTHO05D007153 1.4e-30 136.7 142 48.6
Cre03.g184400 Chlamydomonas reinhardtii HOM05D004290 ORTHO05D005025 2.6e-29 132.5 123 50.4
FAN12G1909 Fragaria x ananassa HOM05D004290 ORTHO05D005025 9.9e-29 130.6 132 50.8
Peaxi162Scf00367g00520 Petunia axillaris HOM05D004290 ORTHO05D005025 2.9e-28 129.0 131 52.7
FvH4_4g28280 Fragaria vesca HOM05D004290 ORTHO05D005025 5.5e-27 124.8 132 47.7
PRCOL_00005217 Prasinoderma coloniale HOM05D004290 ORTHO05D005025 7.4e-24 114.4 131 46.6
Solyc03g150121.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 1.1e-22 110.5 102 53.9
MCO10G139 Micromonas commoda HOM05D004290 ORTHO05D005025 1.8e-22 109.8 134 44.0
Rhsim09G0114000 Rhododendron simsii HOM05D000436 ORTHO05D000678 2.4e-22 109.4 75 69.3
Nitab4.5_0005210g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 9.0e-22 107.5 116 45.7
Aqoxy3G02627 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 1.1e-19 100.5 64 62.5
RcHm_v2.0_Chr2g0142061 Rosa chinensis HOM05D004290 ORTHO05D005025 6.0e-18 94.7 63 71.4
vmacro10513 Vaccinium macrocarpon HOM05D004290 ORTHO05D005025 7.9e-18 94.4 90 54.4
MD13G1048800 Malus domestica HOM05D004290 ORTHO05D005025 8.7e-17 90.9 60 73.3
FAN02G2314 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.3e-16 88.6 82 57.3
RcHm_v2.0_Chr2g0142051 Rosa chinensis HOM05D004290 ORTHO05D005025 4.1e-14 82.0 47 66.0
Oeu018290.1 Olea europaea HOM05D004290 ORTHO05D005025 2.6e-13 79.3 43 72.1
Sopen03g019130 Solanum pennellii HOM05D006181 ORTHO05D008560 2.2e-12 76.3 63 58.7
Prupe.1G303300 Prunus persica HOM05D004290 ORTHO05D005025 5.0e-12 75.1 100 44.0
TAR629G2250 Trochodendron aralioides HOM05D004290 ORTHO05D005025 1.9e-11 73.2 39 69.2
FvH4_6g51211 Fragaria vesca HOM05D004290 ORTHO05D005025 1.7e-07 60.1 38 73.7
Cre07.g336000 Chlamydomonas reinhardtii HOM05D065225 ORTHO05D044221 4.8e-07 58.5 153 32.7
BcaB03g15846 Brassica carinata HOM05D004290 ORTHO05D005025 6.3e-07 58.2 56 53.6


User provided reference genes

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