Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_07727 Corchorus olitorius HOM05D004943 ORTHO05D005953 2.2e-114 415.6 205 100.0
Thecc.07G009400 Theobroma cacao HOM05D004943 ORTHO05D005953 4.1e-105 384.8 205 91.7
Duzib213G0469 Durio zibethinus HOM05D004943 ORTHO05D005953 6.0e-104 380.9 205 91.2
Duzib170G0808 Durio zibethinus HOM05D004943 ORTHO05D005953 2.3e-103 379.0 205 89.8
Gorai.009G451100 Gossypium raimondii HOM05D004943 ORTHO05D005953 1.1e-102 376.7 205 88.8
Gohir.A04G005400 Gossypium hirsutum HOM05D004943 ORTHO05D005953 2.5e-102 375.6 205 88.3
Gohir.D05G384300 Gossypium hirsutum HOM05D004943 ORTHO05D005953 9.5e-102 373.6 205 87.8
Atru.chr2.3743 Acer truncatum HOM05D004943 ORTHO05D005953 3.3e-94 348.6 203 82.8
TWI75G0785 Tripterygium wilfordii HOM05D004943 ORTHO05D005953 1.1e-92 343.6 204 79.4
C03p16160 Brassica napus HOM05D004943 ORTHO05D005953 5.8e-91 337.8 203 78.3
BolC3t14040H Brassica oleracea HOM05D004943 ORTHO05D005953 5.8e-91 337.8 203 78.3
Ciclev10009430m.g Citrus clementina HOM05D004943 ORTHO05D005953 1.3e-90 336.7 194 83.0
THA.LOC104813453 Tarenaya hassleriana HOM05D004943 ORTHO05D005953 4.9e-90 334.7 203 77.8
A03p13760 Brassica napus HOM05D004943 ORTHO05D005953 1.1e-89 333.6 203 76.8
BraA03t10679Z Brassica rapa HOM05D004943 ORTHO05D005953 3.2e-89 332.0 203 76.8
Dinv32219 Davidia involucrata HOM05D004943 ORTHO05D005953 5.4e-89 331.3 206 77.2
Thhalv10014684m.g Eutrema salsugineum HOM05D004943 ORTHO05D005953 5.4e-89 331.3 203 76.4
C02p15720 Brassica napus HOM05D004943 ORTHO05D005953 7.1e-89 330.9 203 76.4
BcaB05g22236 Brassica carinata HOM05D004943 ORTHO05D005953 9.3e-89 330.5 203 75.4
CARHR269310 Cardamine hirsuta HOM05D004943 ORTHO05D005953 9.3e-89 330.5 203 76.8
BcaC04g20187 Brassica carinata HOM05D004943 ORTHO05D005953 1.2e-88 330.1 203 77.3
A10p13120 Brassica napus HOM05D004943 ORTHO05D005953 1.2e-88 330.1 203 77.3
C09p46880 Brassica napus HOM05D004943 ORTHO05D005953 1.2e-88 330.1 203 77.3
Sp6g17790 Schrenkiella parvula HOM05D004943 ORTHO05D005953 1.2e-88 330.1 203 76.8
BraA10t43408Z Brassica rapa HOM05D004943 ORTHO05D005953 1.6e-88 329.7 203 77.3
AT5G55940 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 2.1e-88 329.3 203 76.4
Carub.0008s1627 Capsella rubella HOM05D004943 ORTHO05D005953 3.5e-88 328.6 203 75.9
BolC9t57538H Brassica oleracea HOM05D004943 ORTHO05D005953 4.6e-88 328.2 203 76.8
Manes.15G058100 Manihot esculenta HOM05D004943 ORTHO05D005953 6.0e-88 327.8 203 76.8
Potri.001G370200 Populus trichocarpa HOM05D004943 ORTHO05D005953 6.0e-88 327.8 203 78.8
A02p09420 Brassica napus HOM05D004943 ORTHO05D005953 1.7e-87 326.2 203 74.4
BraA02t06006Z Brassica rapa HOM05D004943 ORTHO05D005953 1.7e-87 326.2 203 74.4
Cfa016921 Carpinus fangiana HOM05D004943 ORTHO05D005953 1.7e-87 326.2 205 75.1
CiPaw.11G205900 Carya illinoinensis HOM05D004943 ORTHO05D005953 2.3e-87 325.9 205 75.6
MD03G1030300 Malus domestica HOM05D004943 ORTHO05D005953 2.3e-87 325.9 205 76.6
MD11G1035300 Malus domestica HOM05D004943 ORTHO05D005953 2.3e-87 325.9 205 76.1
GSVIVG01014728001 Vitis vinifera HOM05D004943 ORTHO05D005953 3.9e-87 325.1 207 75.4
Actinidia35413 Actinidia chinensis HOM05D004943 ORTHO05D005953 5.1e-87 324.7 205 77.6
BcaB08g35959 Brassica carinata HOM05D004943 ORTHO05D005953 5.1e-87 324.7 203 75.9
BolC2t07679H Brassica oleracea HOM05D004943 ORTHO05D005953 5.1e-87 324.7 202 75.7
Hma1.2p1_0023F.1_g015770 Hydrangea macrophylla HOM05D004943 ORTHO05D005953 6.6e-87 324.3 205 74.6
QL08p003376 Quercus lobata HOM05D004943 ORTHO05D005953 6.6e-87 324.3 204 76.0
Dinv21530 Davidia involucrata HOM05D004943 ORTHO05D005953 1.9e-86 322.8 206 74.8
CSS0046003 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 2.5e-86 322.4 204 76.0
Prupe.6G026500 Prunus persica HOM05D004943 ORTHO05D005953 5.6e-86 321.2 205 76.6
TAR375G0957 Trochodendron aralioides HOM05D004943 ORTHO05D005953 7.3e-86 320.9 205 73.2
FvH4_3g42640 Fragaria vesca HOM05D004943 ORTHO05D005953 9.6e-86 320.5 205 75.6
FAN11G3459 Fragaria x ananassa HOM05D004943 ORTHO05D005953 9.6e-86 320.5 205 75.6
Potri.001G370000 Populus trichocarpa HOM05D004943 ORTHO05D005953 9.6e-86 320.5 203 77.3
Aa31LG5G11950 Aethionema arabicum HOM05D004943 ORTHO05D005953 1.6e-85 319.7 203 73.9
CiPaw.12G139900 Carya illinoinensis HOM05D004943 ORTHO05D005953 1.6e-85 319.7 205 74.1
Eucgr.F02035 Eucalyptus grandis HOM05D004943 ORTHO05D005953 1.6e-85 319.7 203 73.9
Lj1C893G4 Lonicera japonica HOM05D004943 ORTHO05D005953 1.6e-85 319.7 205 74.1
vmacro09630 Vaccinium macrocarpon HOM05D004943 ORTHO05D005953 2.1e-85 319.3 207 74.9
CsaV3_4G029170 Cucumis sativus L. HOM05D004943 ORTHO05D005953 2.8e-85 318.9 205 74.1
RcHm_v2.0_Chr5g0076271 Rosa chinensis HOM05D004943 ORTHO05D005953 4.8e-85 318.2 205 75.6
MELO3C019145.2 Cucumis melo HOM05D004943 ORTHO05D005953 1.1e-84 317.0 205 73.7
Aa31LG3G11850 Aethionema arabicum HOM05D004943 ORTHO05D005953 1.8e-84 316.2 213 72.3
FAN21G2115 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.8e-84 316.2 205 74.6
Nitab4.5_0000366g0060 Nicotiana tabacum HOM05D004943 ORTHO05D005953 1.8e-84 316.2 204 75.5
ClCG04G005970 Citrullus lanatus HOM05D004943 ORTHO05D005953 2.4e-84 315.8 205 73.7
MSTRG.15804 Avicennia marina HOM05D004943 ORTHO05D005953 1.2e-83 313.5 205 72.7
Actinidia37138 Actinidia chinensis HOM05D004943 ORTHO05D005953 1.5e-83 313.2 205 73.7
PGSC0003DMG400024208 Solanum tuberosum HOM05D004943 ORTHO05D005953 1.5e-83 313.2 206 73.3
Haze_09852 Corylus avellana HOM05D004943 ORTHO05D005953 2.6e-83 312.4 227 67.4
Solyc07g009160.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 2.6e-83 312.4 206 72.8
PGSC0003DMG400008685 Solanum tuberosum HOM05D004943 ORTHO05D005953 9.9e-83 310.5 203 72.9
Oeu039419.1 Olea europaea HOM05D004943 ORTHO05D005953 1.3e-82 310.1 205 71.7
Sopen07g017150 Solanum pennellii HOM05D004943 ORTHO05D005953 1.7e-82 309.7 206 72.3
Cc05_g15200 Coffea canephora HOM05D004943 ORTHO05D005953 3.8e-82 308.5 205 73.7
Solyc10g005780.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 6.4e-82 307.8 203 72.4
Sabra16G0243100 Salix brachista HOM05D004943 ORTHO05D005953 8.4e-82 307.4 256 62.9
Sopen10g001750 Solanum pennellii HOM05D004943 ORTHO05D005953 8.4e-82 307.4 203 71.9
Glyma.02G301900 Glycine max HOM05D004943 ORTHO05D005953 1.1e-81 307.0 201 71.6
Nn3g19397 Nelumbo nucifera HOM05D004943 ORTHO05D005953 1.1e-81 307.0 205 71.2
PGR083G1222 Punica granatum HOM05D004943 ORTHO05D005953 1.4e-81 306.6 207 72.9
CAN.G160.52 Capsicum annuum HOM05D004943 ORTHO05D005953 2.4e-81 305.8 207 72.5
Lj3g0015751 Lotus japonicus HOM05D004943 ORTHO05D005953 2.4e-81 305.8 202 69.8
Peaxi162Scf00324g00322 Petunia axillaris HOM05D004943 ORTHO05D005953 3.2e-81 305.4 204 73.5
Sed0027327 Sechium edule HOM05D004943 ORTHO05D005953 3.2e-81 305.4 202 73.8
Medtr5g096260 Medicago truncatula HOM05D004943 ORTHO05D005953 1.6e-80 303.1 202 70.8
SGA_v2.0_scaffold42G15954 Striga asiatica HOM05D004943 ORTHO05D005953 2.7e-80 302.4 205 72.2
Migut.H01743 Erythranthe guttata HOM05D004943 ORTHO05D005953 3.5e-80 302.0 203 71.4
Ca_06409_v3 Cicer arietinum L. HOM05D004943 ORTHO05D005953 4.6e-80 301.6 202 70.8
HanXRQChr04g0114541 Helianthus annuus HOM05D004943 ORTHO05D005953 1.0e-79 300.4 204 72.1
VMungo0647G1317 Vigna mungo HOM05D004943 ORTHO05D005953 1.0e-79 300.4 201 69.7
Phvul.008G280500 Phaseolus vulgaris HOM05D004943 ORTHO05D005953 1.8e-79 299.7 201 68.2
arahy.Tifrunner.gnm1.ann1.5RSY3J Arachis hypogaea HOM05D004943 ORTHO05D005953 2.3e-79 299.3 203 68.5
arahy.Tifrunner.gnm1.ann1.7JU3J0 Arachis hypogaea HOM05D004943 ORTHO05D005953 2.3e-79 299.3 203 68.5
Sc13g0002830 Simmondsia chinensis HOM05D004943 ORTHO05D005953 2.3e-79 299.3 209 70.3
LjContig00081g0027973 Lotus japonicus HOM05D004943 ORTHO05D005953 3.0e-79 298.9 202 69.3
Glyma.14G012300 Glycine max HOM05D004943 ORTHO05D005953 3.9e-79 298.5 201 68.7
Oeu046942.1 Olea europaea HOM05D004943 ORTHO05D005953 1.1e-78 297.0 195 71.8
Lalb_Chr13g0300511 Lupinus albus HOM05D004943 ORTHO05D005953 1.9e-78 296.2 205 67.3
unitig_746.g26710 Utricularia gibba HOM05D004943 ORTHO05D005953 1.9e-78 296.2 197 72.1
EL10Ac2g04777 Beta vulgaris HOM05D004943 ORTHO05D005953 2.5e-78 295.8 204 69.1
MSTRG.7011 Avicennia marina HOM05D004943 ORTHO05D005953 3.3e-78 295.4 205 70.7
HanXRQChr11g0334381 Helianthus annuus HOM05D004943 ORTHO05D005953 3.3e-78 295.4 204 72.1
Aqoxy1G01190 Aquilegia oxysepala HOM05D004943 ORTHO05D005953 7.4e-78 294.3 205 67.8
Psat2g006640 Pisum sativum HOM05D004943 ORTHO05D005953 2.1e-77 292.7 202 67.8
AUR62012198 Chenopodium quinoa HOM05D004943 ORTHO05D005953 2.8e-77 292.4 204 69.1
RcHm_v2.0_Chr5g0076591 Rosa chinensis HOM05D004943 ORTHO05D005953 2.8e-77 292.4 205 71.7
PSO541G3156 Papaver somniferum HOM05D004943 ORTHO05D005953 3.6e-77 292.0 206 67.0
TAR374G0816 Trochodendron aralioides HOM05D004943 ORTHO05D005953 1.8e-76 289.7 206 69.9
ECA236G2729 Erigeron canadensis HOM05D004943 ORTHO05D005953 2.4e-76 289.3 204 70.1
PSO675G6228 Papaver somniferum HOM05D004943 ORTHO05D005953 2.4e-76 289.3 206 66.5
AUR62022831 Chenopodium quinoa HOM05D004943 ORTHO05D005953 9.0e-76 287.3 204 68.1
Rhsim04G0011100 Rhododendron simsii HOM05D004943 ORTHO05D005953 9.0e-76 287.3 205 68.3
Lalb_Chr07g0180111 Lupinus albus HOM05D004943 ORTHO05D005953 1.5e-75 286.6 205 65.9
TPR.G36515 Trifolium pratense HOM05D004943 ORTHO05D005953 3.4e-75 285.4 202 67.8
MBI12_g14493_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 5.8e-75 284.6 201 67.2
Lsat_1_v5_gn_5_190221 Lactuca sativa HOM05D004943 ORTHO05D005953 8.4e-74 280.8 206 68.0
CSS0011268 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 3.2e-73 278.9 204 68.6
HPP92_001543 Vanilla planifolia HOM05D004943 ORTHO05D005953 2.7e-72 275.8 207 62.8
ATR0680G115 Amborella trichopoda HOM05D004943 ORTHO05D005953 8.1e-69 264.2 204 58.8
Ah.16g103050 Amaranthus hybridus HOM05D000612 ORTHO05D000461 5.3e-68 261.5 195 66.2
SEGI_32834 Sequoiadendron giganteum HOM05D004943 ORTHO05D005953 7.6e-67 257.7 206 64.1
Os04g0270200 Oryza sativa ssp. japonica HOM05D004943 ORTHO05D005953 1.2e-64 250.4 207 58.0
Cpa.g.sc12.130 Carica papaya HOM05D004943 ORTHO05D005953 5.7e-62 241.5 146 80.1
Zm00001eb086910 Zea mays HOM05D004943 ORTHO05D005953 5.7e-62 241.5 208 56.2
Mapoly0118s0025 Marchantia polymorpha HOM05D004943 ORTHO05D005953 6.5e-58 228.0 214 55.1
DCAR_013248 Daucus carota HOM05D004943 ORTHO05D005953 2.3e-55 219.5 205 56.1
FAN25G1833 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.1e-54 217.2 142 73.9
SMO367G0477 Selaginella moellendorffii HOM05D004943 ORTHO05D005953 1.1e-54 217.2 210 52.9
Pp3c17_17770 Physcomitrium patens HOM05D004943 ORTHO05D005953 2.2e-53 213.0 203 53.7
MD01G1008800 Malus domestica HOM05D004943 ORTHO05D005953 2.8e-53 212.6 147 69.4
Nitab4.5_0007635g0010 Nicotiana tabacum HOM05D004943 ORTHO05D005953 6.9e-52 208.0 139 74.8
Actinidia04992 Actinidia chinensis HOM05D004943 ORTHO05D005953 3.4e-51 205.7 145 72.4
FAN16G1336 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.6e-48 196.8 149 68.5
AagrBONN_evm.TU.Sc2ySwM_117.1155 Anthoceros agrestis HOM05D004943 ORTHO05D005953 1.8e-47 193.4 200 51.0
MBI12_g46257_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 1.7e-45 186.8 139 64.0
Ah.10g036690 Amaranthus hybridus HOM05D000612 ORTHO05D000461 1.5e-43 180.3 129 69.0
Nitab4.5_0005478g0050 Nicotiana tabacum HOM05D004943 ORTHO05D005953 1.8e-39 166.8 182 51.1
Atru.chr2.3756 Acer truncatum HOM05D004943 ORTHO05D005953 4.0e-31 139.0 99 69.7
PRCOL_00005958 Prasinoderma coloniale HOM05D004943 ORTHO05D005953 1.7e-29 133.7 194 41.2
Cre05.g240550 Chlamydomonas reinhardtii HOM05D004943 ORTHO05D005953 7.7e-27 124.8 193 36.3
CBR_g45852 Chara braunii HOM05D004943 ORTHO05D005953 3.2e-25 119.4 126 46.8
MCO09G115 Micromonas commoda HOM05D004943 ORTHO05D005953 5.5e-25 118.6 203 37.4
Nn1g00202 Nelumbo nucifera HOM05D004943 ORTHO05D005953 7.2e-25 118.2 77 64.9
Actinidia30384 Actinidia chinensis HOM05D004943 ORTHO05D005953 1.5e-22 110.5 137 46.7
Nn1g00203 Nelumbo nucifera HOM05D004943 ORTHO05D005953 4.4e-22 109.0 66 72.7
TPR.G20059 Trifolium pratense HOM05D004943 ORTHO05D005953 7.0e-20 101.7 69 68.1
Rhsim04G0226000 Rhododendron simsii HOM05D004943 ORTHO05D005953 3.8e-18 95.9 69 66.7
Atru.chr3.1978 Acer truncatum HOM05D004943 ORTHO05D005953 1.5e-17 94.0 63 69.8
AT5G51620 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 1.4e-15 87.4 51 78.4
Oeu005474.1 Olea europaea HOM05D004943 ORTHO05D288151 1.0e-10 71.2 73 54.8
Rhsim13G0193400 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.5e-09 67.4 50 60.0
Rhsim13G0193700 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.5e-09 67.4 50 60.0
Pp3c14_20520 Physcomitrium patens HOM05D004943 ORTHO05D005953 3.3e-09 66.2 70 50.0
Hund22175 Selenicereus undatus HOM05D004943 ORTHO05D005953 1.2e-08 64.3 35 80.0
Carub.0005s1381 Capsella rubella HOM05D003949 ORTHO05D004504 3.6e-08 62.8 42 61.9
Rhsim13G0193100 Rhododendron simsii HOM05D004943 ORTHO05D005953 2.3e-07 60.1 44 61.4
FAN14G0250 Fragaria x ananassa HOM05D027595 ORTHO05D045540 2.0e-06 57.0 135 34.8


User provided reference genes

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