Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_07651 Corchorus olitorius HOM05D000959 ORTHO05D000775 3.8e-48 194.5 98 100.0
COL.COLO4_34232 Corchorus olitorius HOM05D000959 ORTHO05D000775 6.1e-38 160.6 120 70.8
Thecc.04G229200 Theobroma cacao HOM05D000959 ORTHO05D000775 1.0e-32 143.3 120 63.3
QL06p003004 Quercus lobata HOM05D000959 ORTHO05D000775 3.6e-30 134.8 111 62.2
Cfa015627 Carpinus fangiana HOM05D000959 ORTHO05D000775 6.3e-27 124.0 111 56.8
CiPaw.01G164800 Carya illinoinensis HOM05D000959 ORTHO05D000775 8.2e-27 123.6 111 57.7
CANSAT78G2042 Cannabis sativa HOM05D000959 ORTHO05D000775 2.4e-26 122.1 120 56.7
Atru.chr4.2498 Acer truncatum HOM05D000959 ORTHO05D000775 7.0e-26 120.6 111 55.9
Ciclev10005687m.g Citrus clementina HOM05D000959 ORTHO05D000775 1.5e-25 119.4 120 53.3
Sabra10G0054000 Salix brachista HOM05D000959 ORTHO05D000775 3.5e-25 118.2 115 51.3
Haze_00916 Corylus avellana HOM05D000959 ORTHO05D000775 4.5e-25 117.9 111 55.0
Potri.008G151700 Populus trichocarpa HOM05D000959 ORTHO05D000775 5.9e-25 117.5 115 53.0
Manes.15G027900 Manihot esculenta HOM05D000959 ORTHO05D000775 7.7e-25 117.1 120 55.8
Sabra08G0115500 Salix brachista HOM05D000959 ORTHO05D000775 7.7e-25 117.1 115 54.8
Glyma.10G248900 Glycine max HOM05D000959 ORTHO05D000775 1.0e-24 116.7 114 53.5
Potri.010G089300 Populus trichocarpa HOM05D000959 ORTHO05D000775 1.0e-24 116.7 115 52.2
GSVIVG01017946001 Vitis vinifera HOM05D000959 ORTHO05D000775 1.0e-24 116.7 120 54.2
Hma1.2p1_0745F.1_g212010 Hydrangea macrophylla HOM05D000959 ORTHO05D000775 1.3e-24 116.3 120 52.5
VMungo0720G1514 Vigna mungo HOM05D000959 ORTHO05D000775 2.2e-24 115.5 114 52.6
arahy.Tifrunner.gnm1.ann1.Z7PGHH Arachis hypogaea HOM05D000959 ORTHO05D000775 3.8e-24 114.8 114 50.9
Lj5g0012558 Lotus japonicus HOM05D000959 ORTHO05D000775 5.0e-24 114.4 116 51.7
SGA_v2.0_scaffold39G15264 Striga asiatica HOM05D000959 ORTHO05D000775 6.5e-24 114.0 98 56.1
arahy.Tifrunner.gnm1.ann1.HFV7XQ Arachis hypogaea HOM05D000959 ORTHO05D000775 1.1e-23 113.2 114 50.0
Cpa.g.sc58.124 Carica papaya HOM05D000959 ORTHO05D000775 2.5e-23 112.1 115 52.2
Prupe.1G011600 Prunus persica HOM05D000959 ORTHO05D000775 3.2e-23 111.7 109 53.2
ClCG06G006110 Citrullus lanatus HOM05D000959 ORTHO05D000775 4.2e-23 111.3 121 52.1
MD13G1191400 Malus domestica HOM05D000959 ORTHO05D000775 4.2e-23 111.3 111 53.2
TAR362G0122 Trochodendron aralioides HOM05D000959 ORTHO05D000775 4.2e-23 111.3 120 51.7
Glyma.20G144800 Glycine max HOM05D000959 ORTHO05D000775 5.5e-23 110.9 114 52.6
CsaV3_6G038160 Cucumis sativus L. HOM05D000959 ORTHO05D000775 7.2e-23 110.5 116 50.9
MD16G1191500 Malus domestica HOM05D000959 ORTHO05D000775 9.4e-23 110.2 118 51.7
Aqoxy5G00485 Aquilegia oxysepala HOM05D000959 ORTHO05D000775 1.6e-22 109.4 122 51.6
MELO3C014481.2 Cucumis melo HOM05D000959 ORTHO05D000775 3.6e-22 108.2 123 49.6
Psat6g208440 Pisum sativum HOM05D000959 ORTHO05D000775 3.6e-22 108.2 122 50.8
MSTRG.9992 Avicennia marina HOM05D000959 ORTHO05D000775 4.7e-22 107.8 117 51.3
Sc13g0004330 Simmondsia chinensis HOM05D000959 ORTHO05D000775 6.1e-22 107.5 122 48.4
Manes.03G180200 Manihot esculenta HOM05D000959 ORTHO05D000775 1.4e-21 106.3 122 52.5
TWI09G1632 Tripterygium wilfordii HOM05D000959 ORTHO05D000775 1.4e-21 106.3 121 51.2
MSTRG.4023 Avicennia marina HOM05D000959 ORTHO05D000775 4.0e-21 104.8 120 48.3
FAN22G0632 Fragaria x ananassa HOM05D000959 ORTHO05D000775 4.0e-21 104.8 108 46.3
Medtr1g104610 Medicago truncatula HOM05D000959 ORTHO05D000775 4.0e-21 104.8 122 48.4
Migut.G00328 Erythranthe guttata HOM05D000959 ORTHO05D000775 5.2e-21 104.4 120 45.8
TPR.G5522 Trifolium pratense HOM05D000959 ORTHO05D000775 8.8e-21 103.6 122 47.5
CSS0003447 Camellia sinensis var. sinensis HOM05D000959 ORTHO05D000775 1.1e-20 103.2 120 47.5
PGR004G2606 Punica granatum HOM05D000959 ORTHO05D000775 1.5e-20 102.8 120 46.7
Cc03_g03600 Coffea canephora HOM05D000959 ORTHO05D000775 2.0e-20 102.4 117 49.6
Lj3A738G68 Lonicera japonica HOM05D000959 ORTHO05D000775 2.6e-20 102.1 120 45.8
Hund12155 Selenicereus undatus HOM05D000959 ORTHO05D000775 2.6e-20 102.1 115 47.0
FAN12G3984 Fragaria x ananassa HOM05D000959 ORTHO05D000775 3.3e-20 101.7 108 46.3
RcHm_v2.0_Chr4g0416551 Rosa chinensis HOM05D000959 ORTHO05D000775 3.3e-20 101.7 108 46.3
Sed0008646 Sechium edule HOM05D000959 ORTHO05D000775 3.3e-20 101.7 121 47.9
Actinidia36970 Actinidia chinensis HOM05D000959 ORTHO05D000775 4.4e-20 101.3 120 45.8
Ca_10913_v3 Cicer arietinum L. HOM05D000959 ORTHO05D000775 4.4e-20 101.3 124 49.2
FAN17G0652 Fragaria x ananassa HOM05D000959 ORTHO05D000775 7.4e-20 100.5 108 45.4
THA.LOC104800966 Tarenaya hassleriana HOM05D000959 ORTHO05D000775 2.2e-19 99.0 121 49.6
AUR62033605 Chenopodium quinoa HOM05D000959 ORTHO05D000775 1.1e-18 96.7 113 46.0
Peaxi162Scf00092g01414 Petunia axillaris HOM05D000959 ORTHO05D000775 1.8e-18 95.9 120 45.8
MBI04_g40948_MAGBIO Magnolia biondii HOM05D000959 ORTHO05D000775 3.1e-18 95.1 120 43.3
Nitab4.5_0000043g0310 Nicotiana tabacum HOM05D000959 ORTHO05D000775 3.1e-18 95.1 120 47.5
Nitab4.5_0002946g0030 Nicotiana tabacum HOM05D000959 ORTHO05D000775 1.2e-17 93.2 120 45.0
CAN.G907.13 Capsicum annuum HOM05D000959 ORTHO05D000775 1.6e-17 92.8 114 43.0
AUR62038615 Chenopodium quinoa HOM05D000959 ORTHO05D000775 2.0e-17 92.4 113 45.1
AT2G32150 Arabidopsis thaliana HOM05D000959 ORTHO05D000775 4.5e-17 91.3 120 45.0
Carub.0004s1347 Capsella rubella HOM05D000959 ORTHO05D000775 5.9e-17 90.9 114 45.6
Solyc09g075890.3 Solanum lycopersicum HOM05D000959 ORTHO05D000775 5.9e-17 90.9 120 43.3
Sopen09g030690 Solanum pennellii HOM05D000959 ORTHO05D000775 5.9e-17 90.9 120 43.3
PGSC0003DMG400031834 Solanum tuberosum HOM05D000959 ORTHO05D000775 5.9e-17 90.9 114 43.0
Sed0024843 Sechium edule HOM05D000959 ORTHO05D000775 7.7e-17 90.5 117 42.7
SalBow2G2957 Salvia bowleyana HOM05D000959 ORTHO05D000775 1.0e-16 90.1 120 44.2
CARHR125920 Cardamine hirsuta HOM05D000959 ORTHO05D000775 1.7e-16 89.4 120 45.0
Sp4g14540 Schrenkiella parvula HOM05D000959 ORTHO05D000775 1.7e-16 89.4 115 46.1
AL4G27500 Arabidopsis lyrata HOM05D000959 ORTHO05D000775 2.9e-16 88.6 116 45.7
PSO210G0196 Papaver somniferum HOM05D000959 ORTHO05D000775 3.8e-16 88.2 129 39.5
Actinidia08499 Actinidia chinensis HOM05D000959 ORTHO05D000775 5.0e-16 87.8 158 36.1
Lsat_1_v5_gn_9_77320 Lactuca sativa HOM05D000959 ORTHO05D000775 5.0e-16 87.8 113 43.4
Thhalv10017107m.g Eutrema salsugineum HOM05D000959 ORTHO05D000775 6.5e-16 87.4 115 43.5
BraA05t20276Z Brassica rapa HOM05D000959 ORTHO05D000775 8.5e-16 87.0 114 43.9
C04p17500 Brassica napus HOM05D000959 ORTHO05D000775 1.1e-15 86.7 114 43.0
BolC4t23297H Brassica oleracea HOM05D000959 ORTHO05D000775 1.1e-15 86.7 114 43.0
ECA236G1432 Erigeron canadensis HOM05D000959 ORTHO05D000775 1.5e-15 86.3 113 43.4
DCAR_024602 Daucus carota HOM05D000959 ORTHO05D000775 3.2e-15 85.1 122 42.6
Aa31LG5G4890 Aethionema arabicum HOM05D000959 ORTHO05D000775 1.6e-14 82.8 112 44.6
ClCG06G006130 Citrullus lanatus HOM05D000959 ORTHO05D000775 8.0e-14 80.5 98 42.9
Gohir.D07G131500 Gossypium hirsutum HOM05D000959 ORTHO05D000775 1.2e-12 76.6 122 41.0
HanXRQChr09g0271011 Helianthus annuus HOM05D000959 ORTHO05D000775 1.2e-12 76.6 90 47.8
EL10Ac3g06431 Beta vulgaris HOM05D000959 ORTHO05D000775 1.5e-12 76.3 113 38.1
Gohir.A07G127200 Gossypium hirsutum HOM05D000959 ORTHO05D000775 2.6e-12 75.5 108 46.3
A05p13380 Brassica napus HOM05D000959 ORTHO05D000775 9.8e-12 73.6 149 33.6
Gorai.001G142800 Gossypium raimondii HOM05D000959 ORTHO05D000775 1.8e-10 69.3 133 37.6
CDE05G3644 Ceratophyllum demersum HOM05D004620 ORTHO05D000775 3.1e-10 68.6 123 34.1
Prupe.8G033000 Prunus persica HOM05D000959 ORTHO05D000775 3.1e-10 68.6 40 75.0
CiPaw.07G083700 Carya illinoinensis HOM05D000959 ORTHO05D000775 3.5e-09 65.1 40 72.5
CiPaw.07G136900 Carya illinoinensis HOM05D000959 ORTHO05D000775 3.5e-09 65.1 40 72.5
SGA_v2.0_scaffold126G33775 Striga asiatica HOM05D000959 ORTHO05D000775 4.5e-09 64.7 64 42.2
CDE05G2563 Ceratophyllum demersum HOM05D004620 ORTHO05D005999 5.9e-09 64.3 103 35.9
Phvul.007G056000 Phaseolus vulgaris HOM05D000959 ORTHO05D000775 7.7e-09 63.9 40 67.5
FvH4_4g15270 Fragaria vesca HOM05D000959 ORTHO05D000775 1.3e-08 63.2 40 67.5
Nn4g26290 Nelumbo nucifera HOM05D000959 ORTHO05D000775 5.0e-08 61.2 40 62.5
Lalb_Chr21g0304641 Lupinus albus HOM05D000959 ORTHO05D000775 8.5e-08 60.5 120 40.8
Eucgr.H03532 Eucalyptus grandis HOM05D000959 ORTHO05D000775 1.1e-07 60.1 40 67.5
THA.LOC104816266 Tarenaya hassleriana HOM05D000959 ORTHO05D000775 5.5e-07 57.8 106 34.0
AT5G02230 Arabidopsis thaliana HOM05D000959 ORTHO05D000775 1.2e-06 56.6 91 31.9
SEGI_09736 Sequoiadendron giganteum HOM05D000959 ORTHO05D000775 1.2e-06 56.6 100 34.0
Carub.0006s0107 Capsella rubella HOM05D000959 ORTHO05D000775 1.6e-06 56.2 91 33.0
VMungo0331G1202 Vigna mungo HOM05D000959 ORTHO05D000775 1.6e-06 56.2 75 34.7
SalBow4G3320 Salvia bowleyana HOM05D000959 ORTHO05D000775 2.1e-06 55.8 87 35.6
Zm00001eb054100 Zea mays HOM05D000959 ORTHO05D000775 2.1e-06 55.8 129 30.2
Glyma.10G139400 Glycine max HOM05D000959 ORTHO05D000775 3.6e-06 55.1 76 32.9
AL6G11470 Arabidopsis lyrata HOM05D000959 ORTHO05D000775 6.1e-06 54.3 75 36.0
SEGI_28323 Sequoiadendron giganteum HOM05D000959 ORTHO05D000775 6.1e-06 54.3 88 33.0
Os03g0701200 Oryza sativa ssp. japonica HOM05D000959 ORTHO05D000775 8.0e-06 53.9 93 35.5


User provided reference genes

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