Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_07641 Corchorus olitorius HOM05D000151 ORTHO05D000074 3.5e-140 501.5 235 100.0
COL.COLO4_34274 Corchorus olitorius HOM05D000151 ORTHO05D000074 6.0e-84 314.7 396 46.5
COL.COLO4_07643 Corchorus olitorius HOM05D000151 ORTHO05D000074 1.0e-35 154.5 363 33.6
Dinv28455 Davidia involucrata HOM05D000151 ORTHO05D000074 2.5e-21 106.7 169 39.6
Prupe.6G184600 Prunus persica HOM05D000151 ORTHO05D000074 1.4e-19 100.9 130 42.3
Prupe.6G184200 Prunus persica HOM05D000151 ORTHO05D000074 8.9e-19 98.2 130 41.5
Dinv28403 Davidia involucrata HOM05D000151 ORTHO05D000074 7.5e-18 95.1 142 41.5
MD10G1231500 Malus domestica HOM05D000151 ORTHO05D000074 1.3e-17 94.4 133 40.6
TWI23G0794 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 1.3e-17 94.4 145 41.4
MD05G1250900 Malus domestica HOM05D000151 ORTHO05D000074 8.3e-17 91.7 139 38.1
TWI23G0668 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 1.1e-16 91.3 148 41.9
Actinidia09337 Actinidia chinensis HOM05D000151 ORTHO05D000074 3.2e-16 89.7 146 38.4
Dinv28404 Davidia involucrata HOM05D000151 ORTHO05D000074 4.1e-16 89.4 130 42.3
Dinv28380 Davidia involucrata HOM05D006127 ORTHO05D007465 7.0e-16 88.6 130 40.0
Prupe.6G183700 Prunus persica HOM05D000151 ORTHO05D000074 2.0e-15 87.0 128 37.5
Dinv28382 Davidia involucrata HOM05D000151 ORTHO05D000074 3.5e-15 86.3 142 37.3
Rhsim11G0176200 Rhododendron simsii HOM05D000151 ORTHO05D000074 1.0e-14 84.7 152 37.5
Dinv28488 Davidia involucrata HOM05D000151 ORTHO05D000074 3.0e-14 83.2 133 42.9
TWI63G0609 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 6.6e-14 82.0 139 38.8
MBI17_g17509_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 1.1e-13 81.3 138 35.5
MELO3C014014.2 Cucumis melo HOM05D000151 ORTHO05D000074 1.5e-13 80.9 136 34.6
Dinv15578 Davidia involucrata HOM05D000151 ORTHO05D000074 1.5e-13 80.9 131 40.5
Dinv28402 Davidia involucrata HOM05D000151 ORTHO05D000074 1.9e-13 80.5 145 40.0
TWI14G1327 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 1.9e-13 80.5 133 40.6
CsaV3_3G005870 Cucumis sativus L. HOM05D000151 ORTHO05D034718 3.3e-13 79.7 215 29.8
PGR042G2337 Punica granatum HOM05D000151 ORTHO05D000074 3.3e-13 79.7 130 37.7
RcHm_v2.0_Chr5g0020191 Rosa chinensis HOM05D000151 ORTHO05D000074 3.3e-13 79.7 130 38.5
PGR042G0362 Punica granatum HOM05D000151 ORTHO05D000074 4.3e-13 79.3 130 36.9
MBI17_g17504_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 7.3e-13 78.6 133 38.3
Dinv28490 Davidia involucrata HOM05D000151 ORTHO05D000074 1.6e-12 77.4 132 41.7
Hma1.2p1_2038F.1_g312030 Hydrangea macrophylla HOM05D000151 ORTHO05D000074 1.6e-12 77.4 135 37.8
Rhsim08G0250200 Rhododendron simsii HOM05D000151 ORTHO05D000074 1.6e-12 77.4 154 38.3
PGR031G2418 Punica granatum HOM05D000151 ORTHO05D000074 2.1e-12 77.0 130 35.4
FvH4_3g12381 Fragaria vesca HOM05D000151 ORTHO05D000074 3.6e-12 76.3 144 36.8
Sed0010460 Sechium edule HOM05D000151 ORTHO05D000074 3.6e-12 76.3 154 31.8
FAN21G2872 Fragaria x ananassa HOM05D000151 ORTHO05D000074 8.0e-12 75.1 159 37.7
Sed0007657 Sechium edule HOM05D000151 ORTHO05D000074 8.0e-12 75.1 131 33.6
Sed0018947 Sechium edule HOM05D000151 ORTHO05D000074 1.0e-11 74.7 131 32.8
CAN.G546.35 Capsicum annuum HOM05D000151 ORTHO05D000074 1.4e-11 74.3 135 40.0
Haze_06926 Corylus avellana HOM05D000151 ORTHO05D000074 1.4e-11 74.3 145 37.2
Haze_25246 Corylus avellana HOM05D000151 ORTHO05D000074 1.8e-11 73.9 130 39.2
TWI23G0161 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 1.8e-11 73.9 131 38.9
TWI23G1102 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 1.8e-11 73.9 134 38.8
FAN16G2165 Fragaria x ananassa HOM05D000514 ORTHO05D000222 2.3e-11 73.6 144 34.7
Cfa000098 Carpinus fangiana HOM05D000151 ORTHO05D022277 3.1e-11 73.2 219 27.9
FAN01G1825 Fragaria x ananassa HOM05D000151 ORTHO05D000074 4.0e-11 72.8 120 35.0
FAN06G3994 Fragaria x ananassa HOM05D000151 ORTHO05D000074 4.0e-11 72.8 121 37.2
RcHm_v2.0_Chr1g0376351 Rosa chinensis HOM05D000151 ORTHO05D000074 4.0e-11 72.8 120 35.0
RcHm_v2.0_Chr1g0376381 Rosa chinensis HOM05D000151 ORTHO05D000074 4.0e-11 72.8 120 35.0
FAN06G1169 Fragaria x ananassa HOM05D000151 ORTHO05D000074 5.2e-11 72.4 120 35.0
Cfa000099 Carpinus fangiana HOM05D000151 ORTHO05D000074 6.8e-11 72.0 148 34.5
Manes.07G048850 Manihot esculenta HOM05D000151 ORTHO05D000074 6.8e-11 72.0 136 39.0
RcHm_v2.0_Chr6g0291671 Rosa chinensis HOM05D000151 ORTHO05D000074 6.8e-11 72.0 120 35.8
Sed0012831 Sechium edule HOM05D000151 ORTHO05D000074 6.8e-11 72.0 131 32.8
RcHm_v2.0_Chr6g0312761 Rosa chinensis HOM05D000151 ORTHO05D000074 8.9e-11 71.6 140 32.9
TWI23G1227 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 8.9e-11 71.6 132 37.1
Aqoxy7G00420 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 2.0e-10 70.5 133 33.8
Cfa008697 Carpinus fangiana HOM05D000151 ORTHO05D000074 2.0e-10 70.5 132 34.8
Medtr7g077650 Medicago truncatula HOM05D000151 ORTHO05D000074 2.0e-10 70.5 147 35.4
COL.COLO4_33746 Corchorus olitorius HOM05D000151 ORTHO05D000074 2.6e-10 70.1 42 76.2
Manes.07G048900 Manihot esculenta HOM05D000151 ORTHO05D000074 2.6e-10 70.1 135 38.5
FAN03G1285 Fragaria x ananassa HOM05D000151 ORTHO05D000074 3.4e-10 69.7 121 35.5
Cfa018639 Carpinus fangiana HOM05D000151 ORTHO05D000074 4.4e-10 69.3 134 34.3
MD02G1310000 Malus domestica HOM05D000151 ORTHO05D000074 7.5e-10 68.6 121 36.4
Aqoxy7G01778 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 9.8e-10 68.2 133 33.8
Haze_06927 Corylus avellana HOM05D000151 ORTHO05D000074 9.8e-10 68.2 127 34.6
Haze_06934 Corylus avellana HOM05D000151 ORTHO05D000074 9.8e-10 68.2 127 34.6
Manes.07G048800 Manihot esculenta HOM05D000151 ORTHO05D000074 1.7e-09 67.4 135 38.5
FvH4_7g28790 Fragaria vesca HOM05D000151 ORTHO05D000074 2.2e-09 67.0 121 33.9
Aqoxy7G01775 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 2.9e-09 66.6 133 33.8
EL10Ac3g05443 Beta vulgaris HOM05D000151 ORTHO05D000074 2.9e-09 66.6 140 36.4
FvH4_3g40751 Fragaria vesca HOM05D019358 ORTHO05D000074 2.9e-09 66.6 137 34.3
FAN06G1764 Fragaria x ananassa HOM05D000151 ORTHO05D000074 2.9e-09 66.6 122 33.6
FAN10G0374 Fragaria x ananassa HOM05D000506 ORTHO05D000369 2.9e-09 66.6 122 33.6
Rhsim12G0122800 Rhododendron simsii HOM05D000151 ORTHO05D000074 2.9e-09 66.6 126 38.1
Haze_06933 Corylus avellana HOM05D000151 ORTHO05D000074 4.9e-09 65.9 132 34.8
FAN03G0418 Fragaria x ananassa HOM05D000151 ORTHO05D000074 4.9e-09 65.9 150 31.3
FAN03G1676 Fragaria x ananassa HOM05D000151 ORTHO05D000074 4.9e-09 65.9 150 31.3
MD00G1057500 Malus domestica HOM05D000151 ORTHO05D000074 6.4e-09 65.5 145 33.1
TPR.G4837 Trifolium pratense HOM05D000151 ORTHO05D000074 6.4e-09 65.5 144 33.3
Nitab4.5_0003280g0060 Nicotiana tabacum HOM05D000151 ORTHO05D000074 8.3e-09 65.1 130 33.8
FvH4_1g07660 Fragaria vesca HOM05D000151 ORTHO05D000074 1.4e-08 64.3 125 35.2
FAN19G1262 Fragaria x ananassa HOM05D000151 ORTHO05D000074 1.4e-08 64.3 125 35.2
Manes.07G051600 Manihot esculenta HOM05D000151 ORTHO05D000074 1.9e-08 63.9 134 38.1
Medtr7g077660 Medicago truncatula HOM05D000151 ORTHO05D000074 1.9e-08 63.9 141 36.2
FAN01G2555 Fragaria x ananassa HOM05D000151 ORTHO05D000074 3.2e-08 63.2 124 31.5
RcHm_v2.0_Chr1g0324251 Rosa chinensis HOM05D000151 ORTHO05D000074 3.2e-08 63.2 120 33.3
Solyc04g082060.4 Solanum lycopersicum HOM05D000151 ORTHO05D000074 3.2e-08 63.2 137 32.1
Sopen04g035710 Solanum pennellii HOM05D000151 ORTHO05D000074 3.2e-08 63.2 137 32.1
PGSC0003DMG400009960 Solanum tuberosum HOM05D000151 ORTHO05D000074 3.2e-08 63.2 134 32.8
Aqoxy3G03855 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 4.1e-08 62.8 145 31.7
FvH4_7g28820 Fragaria vesca HOM05D000151 ORTHO05D000074 5.4e-08 62.4 122 32.8
FAN06G4228 Fragaria x ananassa HOM05D000151 ORTHO05D000074 5.4e-08 62.4 121 33.9
Medtr1g108740 Medicago truncatula HOM05D000151 ORTHO05D000074 5.4e-08 62.4 140 32.9
FvH4_2g34380 Fragaria vesca HOM05D000151 ORTHO05D000074 7.0e-08 62.0 126 31.7
FvH4_6g52703 Fragaria vesca HOM05D000151 ORTHO05D000074 7.0e-08 62.0 121 31.4
Medtr1g016150 Medicago truncatula HOM05D000151 ORTHO05D000074 7.0e-08 62.0 147 32.0
Aqoxy7G00556 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 9.2e-08 61.6 131 30.5
CANSAT80G0103 Cannabis sativa HOM05D000151 ORTHO05D000074 9.2e-08 61.6 122 34.4
FAN03G0557 Fragaria x ananassa HOM05D000151 ORTHO05D000074 9.2e-08 61.6 124 33.1
FAN03G2041 Fragaria x ananassa HOM05D000151 ORTHO05D000074 9.2e-08 61.6 124 33.1
Medtr5g082770 Medicago truncatula HOM05D000151 ORTHO05D000074 9.2e-08 61.6 138 34.8
Peaxi162Scf00119g01111 Petunia axillaris HOM05D000151 ORTHO05D000074 9.2e-08 61.6 126 31.7
FAN06G0118 Fragaria x ananassa HOM05D000151 ORTHO05D000074 1.2e-07 61.2 126 33.3
Thecc.06G008300 Theobroma cacao HOM05D000151 ORTHO05D000074 1.2e-07 61.2 146 39.0
FAN02G1417 Fragaria x ananassa HOM05D003473 ORTHO05D003872 1.6e-07 60.8 123 29.3
MBI17_g17513_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 1.6e-07 60.8 128 34.4
Prupe.2G290700 Prunus persica HOM05D000151 ORTHO05D000074 1.6e-07 60.8 120 30.8
Rhsim03G0175900 Rhododendron simsii HOM05D002642 ORTHO05D002834 1.6e-07 60.8 141 33.3
Aqoxy2G00530 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 2.0e-07 60.5 134 34.3
Aqoxy7G00582 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 2.0e-07 60.5 127 31.5
FAN14G5100 Fragaria x ananassa HOM05D000151 ORTHO05D000074 2.0e-07 60.5 121 31.4
Aqoxy2G00256 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 2.7e-07 60.1 137 34.3
Actinidia25883 Actinidia chinensis HOM05D000151 ORTHO05D000074 3.5e-07 59.7 122 31.1
CANSAT25G2056 Cannabis sativa HOM05D000151 ORTHO05D000074 3.5e-07 59.7 136 31.6
MSTRG.6367 Avicennia marina HOM05D000151 ORTHO05D000074 4.6e-07 59.3 138 30.4
Ca_04705_v3 Cicer arietinum L. HOM05D000151 ORTHO05D000074 4.6e-07 59.3 140 33.6
Duzib116G0495 Durio zibethinus HOM05D000151 ORTHO05D000074 4.6e-07 59.3 130 31.5
FAN06G0274 Fragaria x ananassa HOM05D000151 ORTHO05D000074 4.6e-07 59.3 126 32.5
FAN15G0095 Fragaria x ananassa HOM05D000151 ORTHO05D000074 4.6e-07 59.3 122 32.0
QL05p064445 Quercus lobata HOM05D000151 ORTHO05D000074 4.6e-07 59.3 146 33.6
RcHm_v2.0_Chr1g0339581 Rosa chinensis HOM05D000151 ORTHO05D000074 4.6e-07 59.3 137 33.6
TAR636G0219 Trochodendron aralioides HOM05D000151 ORTHO05D000074 4.6e-07 59.3 142 33.1
TAR636G2580 Trochodendron aralioides HOM05D000151 ORTHO05D000074 4.6e-07 59.3 142 33.1
Medtr5g038260 Medicago truncatula HOM05D000151 ORTHO05D000074 6.0e-07 58.9 136 36.0
Ca_04730_v3 Cicer arietinum L. HOM05D000151 ORTHO05D000074 7.8e-07 58.5 139 33.1
Psat2g031920 Pisum sativum HOM05D000151 ORTHO05D000074 7.8e-07 58.5 141 33.3
Gohir.A09G216560 Gossypium hirsutum HOM05D000151 ORTHO05D000074 1.0e-06 58.2 123 30.1
Nn1g05876 Nelumbo nucifera HOM05D001286 ORTHO05D000440 1.0e-06 58.2 210 24.8
TWI38G2055 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 1.0e-06 58.2 131 35.1
Medtr5g038230 Medicago truncatula HOM05D000151 ORTHO05D000074 1.3e-06 57.8 136 34.6
Aqoxy3G03868 Aquilegia oxysepala HOM05D007346 ORTHO05D009044 2.3e-06 57.0 127 31.5
Haze_08665 Corylus avellana HOM05D000151 ORTHO05D000074 2.3e-06 57.0 116 31.9
Thecc.05G050600 Theobroma cacao HOM05D000151 ORTHO05D000074 2.3e-06 57.0 128 33.6
Dinv43794 Davidia involucrata HOM05D000151 ORTHO05D000074 3.0e-06 56.6 143 28.0
Dinv43798 Davidia involucrata HOM05D000713 ORTHO05D000547 3.0e-06 56.6 143 28.0
Prupe.1G227900 Prunus persica HOM05D000151 ORTHO05D000074 3.0e-06 56.6 137 30.7
RcHm_v2.0_Chr6g0290581 Rosa chinensis HOM05D000151 ORTHO05D000074 3.0e-06 56.6 139 29.5
Thecc.03G275800 Theobroma cacao HOM05D000151 ORTHO05D000074 3.0e-06 56.6 133 33.8
Thecc.04G160800 Theobroma cacao HOM05D000151 ORTHO05D000074 3.0e-06 56.6 127 35.4
CSS0034097 Camellia sinensis var. sinensis HOM05D000151 ORTHO05D000074 3.9e-06 56.2 132 32.6
Haze_03426 Corylus avellana HOM05D000151 ORTHO05D000074 3.9e-06 56.2 127 34.6
FvH4_7g29040 Fragaria vesca HOM05D000151 ORTHO05D000074 3.9e-06 56.2 120 33.3
RcHm_v2.0_Chr6g0290601 Rosa chinensis HOM05D000151 ORTHO05D000074 3.9e-06 56.2 140 29.3
MD04G1097400 Malus domestica HOM05D000151 ORTHO05D000074 5.0e-06 55.8 115 34.8
Prupe.8G190900 Prunus persica HOM05D000151 ORTHO05D000074 5.0e-06 55.8 128 32.0
Actinidia11160 Actinidia chinensis HOM05D000131 ORTHO05D000074 6.6e-06 55.5 121 33.9
COL.COLO4_14639 Corchorus olitorius HOM05D001286 ORTHO05D000440 6.6e-06 55.5 156 28.8


User provided reference genes

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