Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_07614 Corchorus olitorius HOM05D003801 ORTHO05D004812 2.2e-94 349.0 179 100.0
COL.COLO4_11183 Corchorus olitorius HOM05D003801 ORTHO05D004812 2.2e-33 146.4 165 54.5
Thecc.09G360800 Theobroma cacao HOM05D003801 ORTHO05D004812 2.4e-32 142.9 165 52.7
Duzib168G2305 Durio zibethinus HOM05D003801 ORTHO05D004812 3.5e-31 139.0 165 50.9
Gohir.A03G024300 Gossypium hirsutum HOM05D003801 ORTHO05D004812 3.8e-30 135.6 179 47.5
Gohir.D03G144200 Gossypium hirsutum HOM05D003801 ORTHO05D004812 3.8e-30 135.6 179 47.5
Gorai.003G151500 Gossypium raimondii HOM05D003801 ORTHO05D004812 3.8e-30 135.6 179 47.5
VMungo0647G2088 Vigna mungo HOM05D003801 ORTHO05D004812 1.5e-26 123.6 162 45.7
Ca_05689_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 2.0e-26 123.2 163 45.4
GSVIVG01024601001 Vitis vinifera HOM05D003801 ORTHO05D004812 5.7e-26 121.7 179 43.6
Psat2g052760 Pisum sativum HOM05D003801 ORTHO05D004812 1.3e-25 120.6 163 46.0
FvH4_3g40080 Fragaria vesca HOM05D003801 ORTHO05D004812 2.2e-25 119.8 179 43.6
FAN11G2663 Fragaria x ananassa HOM05D003801 ORTHO05D004812 2.2e-25 119.8 179 43.6
FAN21G1607 Fragaria x ananassa HOM05D003801 ORTHO05D004812 2.2e-25 119.8 179 43.6
RcHm_v2.0_Chr5g0072271 Rosa chinensis HOM05D003801 ORTHO05D004812 2.2e-25 119.8 179 43.6
Sed0013919 Sechium edule HOM05D003801 ORTHO05D004812 2.2e-25 119.8 162 45.7
TPR.G17744 Trifolium pratense HOM05D003801 ORTHO05D004812 2.2e-25 119.8 190 41.6
PGR004G1069 Punica granatum HOM05D003801 ORTHO05D004812 3.7e-25 119.0 165 42.4
Atru.chr1.2566 Acer truncatum HOM05D003801 ORTHO05D004812 4.8e-25 118.6 162 45.1
Atru.chr1.2574 Acer truncatum HOM05D003801 ORTHO05D004812 4.8e-25 118.6 162 45.1
LjContig00141g0011314 Lotus japonicus HOM05D003801 ORTHO05D004812 4.8e-25 118.6 179 43.6
Potri.013G154300 Populus trichocarpa HOM05D003801 ORTHO05D004812 4.8e-25 118.6 163 44.2
Prupe.6G045000 Prunus persica HOM05D003801 ORTHO05D004812 8.2e-25 117.9 179 42.5
Ciclev10000209m.g Citrus clementina HOM05D003801 ORTHO05D004812 1.1e-24 117.5 162 44.4
BcaC05g24660 Brassica carinata HOM05D003801 ORTHO05D004812 1.4e-24 117.1 167 42.5
BolC5t29277H Brassica oleracea HOM05D003801 ORTHO05D004812 1.4e-24 117.1 167 42.5
CDE04G3388 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 1.4e-24 117.1 190 42.6
BraA10t42811Z Brassica rapa HOM05D003801 ORTHO05D004812 7.0e-24 114.8 167 41.9
Manes.18G140750 Manihot esculenta HOM05D003801 ORTHO05D004812 9.1e-24 114.4 163 43.6
Sp1g05660 Schrenkiella parvula HOM05D003801 ORTHO05D004812 9.1e-24 114.4 167 41.9
AL1G16990 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 1.2e-23 114.0 167 41.9
AT1G06950 Arabidopsis thaliana HOM05D003801 ORTHO05D004812 2.6e-23 112.8 167 41.3
Carub.0001s0624 Capsella rubella HOM05D003801 ORTHO05D004812 2.6e-23 112.8 167 41.3
CARHR006620 Cardamine hirsuta HOM05D003801 ORTHO05D004812 2.6e-23 112.8 167 41.3
C08p02740 Brassica napus HOM05D003801 ORTHO05D004812 5.9e-23 111.7 167 41.9
Thhalv10006671m.g Eutrema salsugineum HOM05D003801 ORTHO05D004812 5.9e-23 111.7 179 40.8
TWI75G1891 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 7.7e-23 111.3 162 40.7
A08p35840 Brassica napus HOM05D003801 ORTHO05D004812 1.0e-22 110.9 167 41.9
BraA08t35491Z Brassica rapa HOM05D003801 ORTHO05D004812 1.0e-22 110.9 167 41.9
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 1.3e-22 110.5 167 41.3
Sabra19G0130000 Salix brachista HOM05D003801 ORTHO05D004812 1.3e-22 110.5 163 41.1
TWI79G0650 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 5.0e-22 108.6 162 39.5
Cpa.g.sc173.16 Carica papaya HOM05D003801 ORTHO05D004812 8.5e-22 107.8 163 43.6
Sabra13G0124100 Salix brachista HOM05D003801 ORTHO05D004812 1.1e-21 107.5 186 37.6
SMO347G0592 Selaginella moellendorffii HOM05D003801 ORTHO05D004812 2.5e-21 106.3 179 38.5
Medtr3g466170 Medicago truncatula HOM05D003801 ORTHO05D004812 3.2e-21 105.9 179 39.1
A10p05480 Brassica napus HOM05D003801 ORTHO05D004812 4.2e-21 105.5 191 36.6
Pp3c14_10270 Physcomitrium patens HOM05D003801 ORTHO05D004812 4.2e-21 105.5 180 38.9
AUR62009720 Chenopodium quinoa HOM05D003801 ORTHO05D004812 5.5e-21 105.1 165 39.4
EL10Ac7g15867 Beta vulgaris HOM05D003801 ORTHO05D004812 7.2e-21 104.8 165 38.8
Hund05047 Selenicereus undatus HOM05D003801 ORTHO05D004812 7.2e-21 104.8 179 38.0
Sabra19G0125000 Salix brachista HOM05D003801 ORTHO05D004812 9.4e-21 104.4 171 39.8
Sabra19G0125200 Salix brachista HOM05D003801 ORTHO05D004812 9.4e-21 104.4 171 39.8
Pp3c17_6540 Physcomitrium patens HOM05D003801 ORTHO05D004812 1.2e-20 104.0 180 38.3
Lj1A124T30 Lonicera japonica HOM05D003801 ORTHO05D004812 2.1e-20 103.2 179 40.2
Psat5g150840 Pisum sativum HOM05D003801 ORTHO05D004812 2.7e-20 102.8 179 38.5
AUR62036227 Chenopodium quinoa HOM05D003801 ORTHO05D004812 3.6e-20 102.4 165 38.2
Oeu044915.1 Olea europaea HOM05D003801 ORTHO05D004812 3.6e-20 102.4 180 39.4
TPR.G24942 Trifolium pratense HOM05D003801 ORTHO05D004812 3.6e-20 102.4 179 38.0
HPP92_014541 Vanilla planifolia HOM05D003801 ORTHO05D004812 3.6e-20 102.4 179 38.0
Lalb_Chr10g0103681 Lupinus albus HOM05D003801 ORTHO05D004812 1.8e-19 100.1 163 41.1
ClCG03G000210 Citrullus lanatus HOM05D003801 ORTHO05D004812 3.0e-19 99.4 162 42.0
QL01p018072 Quercus lobata HOM05D003801 ORTHO05D004812 3.0e-19 99.4 162 40.7
MELO3C020500.2 Cucumis melo HOM05D003801 ORTHO05D004812 5.2e-19 98.6 179 40.2
Mapoly0002s0142 Marchantia polymorpha HOM05D003801 ORTHO05D004812 5.2e-19 98.6 180 35.0
HanXRQChr08g0228441 Helianthus annuus HOM05D003801 ORTHO05D004812 8.8e-19 97.8 162 40.1
MD11G1060900 Malus domestica HOM05D003801 ORTHO05D004812 8.8e-19 97.8 163 41.1
ECA247G0395 Erigeron canadensis HOM05D003801 ORTHO05D004812 1.2e-18 97.4 179 38.0
CiPaw.13G066600 Carya illinoinensis HOM05D003801 ORTHO05D004812 1.5e-18 97.1 163 41.1
Glyma.02G233700 Glycine max HOM05D003801 ORTHO05D004812 1.5e-18 97.1 162 41.4
Haze_24439 Corylus avellana HOM05D003801 ORTHO05D004812 2.0e-18 96.7 162 41.4
Glyma.14G201500 Glycine max HOM05D003801 ORTHO05D004812 2.0e-18 96.7 162 41.4
Actinidia32598 Actinidia chinensis HOM05D003801 ORTHO05D004812 2.6e-18 96.3 179 36.3
Eucgr.I01027 Eucalyptus grandis HOM05D003801 ORTHO05D004812 2.6e-18 96.3 165 39.4
TAR369G0201 Trochodendron aralioides HOM05D003801 ORTHO05D004812 2.6e-18 96.3 163 39.9
Cfa011800 Carpinus fangiana HOM05D003801 ORTHO05D004812 3.4e-18 95.9 162 41.4
MSTRG.17901 Avicennia marina HOM05D003801 ORTHO05D004812 4.4e-18 95.5 164 39.6
SEGI_40714 Sequoiadendron giganteum HOM05D003801 ORTHO05D004812 4.4e-18 95.5 179 35.2
CsaV3_1G036690 Cucumis sativus L. HOM05D003801 ORTHO05D004812 5.7e-18 95.1 163 39.9
CANSAT54G0450 Cannabis sativa HOM05D003801 ORTHO05D004812 7.5e-18 94.7 179 40.8
Phvul.008G250000 Phaseolus vulgaris HOM05D003801 ORTHO05D004812 7.5e-18 94.7 179 38.0
vmacro02901 Vaccinium macrocarpon HOM05D003801 ORTHO05D004812 7.5e-18 94.7 154 38.3
Aa31LG5G6380 Aethionema arabicum HOM05D003801 ORTHO05D004812 9.8e-18 94.4 163 38.7
FAN16G2780 Fragaria x ananassa HOM05D003801 ORTHO05D004812 1.7e-17 93.6 178 38.8
MD03G1058800 Malus domestica HOM05D003801 ORTHO05D004812 1.7e-17 93.6 163 39.9
TAR623G1445 Trochodendron aralioides HOM05D003801 ORTHO05D004812 2.2e-17 93.2 163 41.7
ATR0584G141 Amborella trichopoda HOM05D003801 ORTHO05D004812 2.8e-17 92.8 163 38.7
Nn1g08532 Nelumbo nucifera HOM05D003801 ORTHO05D004812 2.8e-17 92.8 179 38.0
MSTRG.18544 Avicennia marina HOM05D003801 ORTHO05D004812 8.3e-17 91.3 163 38.7
Medtr5g074690 Medicago truncatula HOM05D003801 ORTHO05D004812 1.1e-16 90.9 179 36.9
Glyma.18G055700 Glycine max HOM05D003801 ORTHO05D004812 1.4e-16 90.5 162 38.9
Os10g0492000 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 1.4e-16 90.5 178 34.3
Sabra19G0124700 Salix brachista HOM05D003801 ORTHO05D004812 1.4e-16 90.5 69 65.2
Sabra19G0125100 Salix brachista HOM05D003801 ORTHO05D004812 1.4e-16 90.5 69 65.2
Sabra19G0125300 Salix brachista HOM05D003801 ORTHO05D004812 1.4e-16 90.5 69 65.2
TAR624G1267 Trochodendron aralioides HOM05D004621 ORTHO05D005817 1.4e-16 90.5 61 70.5
Eucgr.B04013 Eucalyptus grandis HOM05D003801 ORTHO05D004812 1.8e-16 90.1 165 38.2
Potri.019G127000 Populus trichocarpa HOM05D003801 ORTHO05D004812 1.8e-16 90.1 163 38.0
FAN25G2625 Fragaria x ananassa HOM05D003801 ORTHO05D004812 3.1e-16 89.4 178 37.6
arahy.Tifrunner.gnm1.ann1.Z7TKRX Arachis hypogaea HOM05D003801 ORTHO05D004812 5.4e-16 88.6 162 40.7
Lj1A123G49 Lonicera japonica HOM05D003801 ORTHO05D004812 5.4e-16 88.6 139 44.6
Nn5g27878 Nelumbo nucifera HOM05D003801 ORTHO05D004812 7.0e-16 88.2 179 38.0
Migut.D00836 Erythranthe guttata HOM05D003801 ORTHO05D004812 1.6e-15 87.0 180 37.8
BcaB03g13435 Brassica carinata HOM05D003801 ORTHO05D004812 2.0e-15 86.7 65 64.6
AL1G17110 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 5.9e-15 85.1 65 61.5
Rhsim13G0062300 Rhododendron simsii HOM05D003801 ORTHO05D004812 5.9e-15 85.1 77 57.1
SGA_v2.0_scaffold20G09298 Striga asiatica HOM05D003801 ORTHO05D004812 1.0e-14 84.3 180 34.4
Dinv28708 Davidia involucrata HOM05D003801 ORTHO05D004812 1.3e-14 84.0 162 37.7
PSO384G0852 Papaver somniferum HOM05D003801 ORTHO05D004812 1.7e-14 83.6 227 35.2
CSS0002946 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 3.8e-14 82.4 163 38.0
PSO339G1799 Papaver somniferum HOM05D003801 ORTHO05D004812 3.8e-14 82.4 227 35.7
CAN.G1702.5 Capsicum annuum HOM05D003801 ORTHO05D004812 2.5e-13 79.7 164 39.6
CBR_g29785 Chara braunii HOM05D003801 ORTHO05D004812 2.5e-13 79.7 190 29.5
Peaxi162Scf00095g00168 Petunia axillaris HOM05D003801 ORTHO05D004812 3.2e-13 79.3 179 38.0
PSO339G3141 Papaver somniferum HOM05D003801 ORTHO05D004812 4.2e-13 79.0 61 60.7
Sc17g0002560 Simmondsia chinensis HOM05D003801 ORTHO05D004812 4.2e-13 79.0 179 34.6
Zm00001eb044910 Zea mays HOM05D003801 ORTHO05D004812 5.5e-13 78.6 160 32.5
Cc01_g14930 Coffea canephora HOM05D003801 ORTHO05D004812 3.6e-12 75.9 163 34.4
DCAR_028861 Daucus carota HOM05D003801 ORTHO05D004812 1.0e-11 74.3 163 34.4
Hma1.2p1_1637F.1_g294880 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 1.0e-11 74.3 163 36.2
Lsat_1_v5_gn_9_14381 Lactuca sativa HOM05D003801 ORTHO05D004812 1.0e-11 74.3 162 35.8
SHI19243 Sapria himalayana HOM05D003801 ORTHO05D004812 1.0e-11 74.3 173 30.6
Cc01_g15070 Coffea canephora HOM05D003801 ORTHO05D004812 2.3e-11 73.2 163 36.2
Nitab4.5_0004906g0050 Nicotiana tabacum HOM05D003801 ORTHO05D004812 5.2e-11 72.0 163 37.4
Sopen09g014770 Solanum pennellii HOM05D003801 ORTHO05D004812 1.5e-10 70.5 164 35.4
unitig_747.g21451 Utricularia gibba HOM05D003801 ORTHO05D004812 2.6e-10 69.7 164 31.7
Solyc09g031780.3 Solanum lycopersicum HOM05D003801 ORTHO05D004812 3.4e-10 69.3 164 35.4
Aqoxy2G00749 Aquilegia oxysepala HOM05D003801 ORTHO05D004812 7.5e-10 68.2 163 30.7
Glyma.11G162400 Glycine max HOM05D003801 ORTHO05D004812 6.3e-09 65.1 102 41.2
TAR629G1141 Trochodendron aralioides HOM05D000566 ORTHO05D000686 1.4e-08 63.9 33 87.9
BcaB02g06769 Brassica carinata HOM05D003801 ORTHO05D004812 1.8e-08 63.5 36 83.3
Oeu050039.1 Olea europaea HOM05D003801 ORTHO05D004812 9.1e-08 61.2 42 69.0
Hma1.2p1_1421F.1_g282490 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 1.2e-07 60.8 73 46.6
Lj6A615T91 Lonicera japonica HOM05D003801 ORTHO05D004812 1.2e-07 60.8 52 57.7
CSS0035288 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 1.6e-07 60.5 61 52.5
Dinv12255 Davidia involucrata HOM05D003801 ORTHO05D004812 5.9e-07 58.5 32 84.4
Oeu050040.1 Olea europaea HOM05D003801 ORTHO05D004812 2.9e-06 56.2 36 77.8
CDE07G0490 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 6.6e-06 55.1 36 77.8


User provided reference genes

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