Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_07583 Corchorus olitorius HOM05D003890 ORTHO05D004514 1.0e-128 463.4 229 100.0
Thecc.09G233900 Theobroma cacao HOM05D003890 ORTHO05D004514 7.9e-105 384.0 229 84.3
Duzib150G1364 Durio zibethinus HOM05D003890 ORTHO05D004514 1.1e-103 380.2 230 83.0
Gohir.A05G069400 Gossypium hirsutum HOM05D003890 ORTHO05D004514 4.3e-103 378.3 230 82.6
Gohir.D05G072300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 2.8e-102 375.6 230 82.6
Gorai.009G073300 Gossypium raimondii HOM05D003890 ORTHO05D004514 2.8e-102 375.6 230 82.6
Duzib170G0856 Durio zibethinus HOM05D003890 ORTHO05D004514 4.0e-101 371.7 227 79.3
Potri.001G258100 Populus trichocarpa HOM05D003890 ORTHO05D004514 5.1e-96 354.8 229 76.9
Sabra16G0157800 Salix brachista HOM05D003890 ORTHO05D004514 2.5e-95 352.4 229 76.0
Atru.chr3.2715 Acer truncatum HOM05D003890 ORTHO05D004514 1.8e-93 346.3 229 76.0
Manes.06G164200 Manihot esculenta HOM05D003890 ORTHO05D004514 1.8e-93 346.3 229 76.0
Potri.009G053300 Populus trichocarpa HOM05D003890 ORTHO05D004514 2.4e-93 345.9 229 77.3
Ciclev10016574m.g Citrus clementina HOM05D003890 ORTHO05D004514 3.1e-93 345.5 231 76.6
Manes.14G002800 Manihot esculenta HOM05D003890 ORTHO05D004514 5.3e-93 344.7 231 75.8
QL01p004686 Quercus lobata HOM05D003890 ORTHO05D004514 1.2e-92 343.6 228 74.6
Cpa.g.sc84.53 Carica papaya HOM05D003890 ORTHO05D004514 3.4e-92 342.0 230 75.2
Haze_23135 Corylus avellana HOM05D000807 ORTHO05D000662 4.5e-92 341.7 229 74.7
CiPaw.13G160900 Carya illinoinensis HOM05D003890 ORTHO05D004514 5.9e-92 341.3 229 74.7
Cfa009770 Carpinus fangiana HOM05D003890 ORTHO05D004514 1.9e-90 336.3 229 74.2
Glyma.18G070500 Glycine max HOM05D003890 ORTHO05D004514 3.2e-90 335.5 231 72.7
Prupe.4G249500 Prunus persica HOM05D003890 ORTHO05D004514 3.2e-90 335.5 229 74.2
Glyma.08G335500 Glycine max HOM05D003890 ORTHO05D004514 7.2e-90 334.3 235 71.5
Phvul.006G062600 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 7.2e-90 334.3 231 71.9
ClCG03G013240 Citrullus lanatus HOM05D003890 ORTHO05D004514 4.6e-89 331.6 229 72.9
FvH4_3g28850 Fragaria vesca HOM05D003890 ORTHO05D004514 4.6e-89 331.6 229 71.6
FAN16G3317 Fragaria x ananassa HOM05D003890 ORTHO05D004514 4.6e-89 331.6 229 71.6
VMungo0540G2384 Vigna mungo HOM05D003890 ORTHO05D004514 7.9e-89 330.9 231 71.4
CiPaw.14G119100 Carya illinoinensis HOM05D003890 ORTHO05D004514 1.4e-88 330.1 229 72.5
Lj6g0021955 Lotus japonicus HOM05D003890 ORTHO05D004514 1.4e-88 330.1 232 69.8
TAR636G2753 Trochodendron aralioides HOM05D003890 ORTHO05D004514 1.4e-88 330.1 229 71.2
Dinv36258 Davidia involucrata HOM05D003890 ORTHO05D004514 1.8e-88 329.7 229 72.9
FAN21G3604 Fragaria x ananassa HOM05D003890 ORTHO05D004514 2.3e-88 329.3 229 70.7
FAN25G3809 Fragaria x ananassa HOM05D003890 ORTHO05D004514 2.3e-88 329.3 229 71.2
FAN11G0759 Fragaria x ananassa HOM05D003890 ORTHO05D004514 8.8e-88 327.4 229 70.7
RcHm_v2.0_Chr5g0052051 Rosa chinensis HOM05D003890 ORTHO05D004514 8.8e-88 327.4 229 71.2
Sabra09G0038800 Salix brachista HOM05D003890 ORTHO05D004514 1.1e-87 327.0 229 72.9
MD11G1193100 Malus domestica HOM05D003890 ORTHO05D004514 1.5e-87 326.6 230 74.8
MD03G1175000 Malus domestica HOM05D003890 ORTHO05D004514 3.3e-87 325.5 230 73.5
TAR633G1481 Trochodendron aralioides HOM05D003890 ORTHO05D004514 1.3e-86 323.6 229 71.6
Ca_14881_v3 Cicer arietinum L. HOM05D003890 ORTHO05D004514 1.1e-85 320.5 231 69.7
CsaV3_1G042820 Cucumis sativus L. HOM05D003890 ORTHO05D004514 1.1e-85 320.5 229 69.4
Psat5g163000 Pisum sativum HOM05D003890 ORTHO05D004514 1.8e-85 319.7 232 69.0
Sed0019717 Sechium edule HOM05D003890 ORTHO05D004514 2.4e-85 319.3 229 68.6
Medtr3g061630 Medicago truncatula HOM05D003890 ORTHO05D004514 4.1e-85 318.5 232 67.2
TPR.G30124 Trifolium pratense HOM05D003890 ORTHO05D004514 2.6e-84 315.8 231 67.1
Gohir.D09G111000 Gossypium hirsutum HOM05D003890 ORTHO05D004514 2.9e-83 312.4 229 70.7
Gorai.006G128600 Gossypium raimondii HOM05D003890 ORTHO05D004514 3.8e-83 312.0 229 70.7
Aqoxy2G00137 Aquilegia oxysepala HOM05D003890 ORTHO05D004514 1.1e-82 310.5 229 66.8
CANSAT56G1539 Cannabis sativa HOM05D003890 ORTHO05D004514 2.5e-82 309.3 238 68.1
Nn2g15369 Nelumbo nucifera HOM05D003890 ORTHO05D004514 5.5e-82 308.1 225 68.0
Gohir.A09G114300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 7.2e-82 307.8 229 70.3
Hma1.2p1_0027F.1_g017050 Hydrangea macrophylla HOM05D003890 ORTHO05D004514 7.9e-81 304.3 229 67.2
Dinv09354 Davidia involucrata HOM05D003890 ORTHO05D004514 1.4e-80 303.5 223 65.5
Actinidia06907 Actinidia chinensis HOM05D003890 ORTHO05D004514 1.8e-80 303.1 229 67.7
Lalb_Chr18g0050551 Lupinus albus HOM05D003890 ORTHO05D004514 1.8e-80 303.1 222 65.8
arahy.Tifrunner.gnm1.ann1.5L0PCQ Arachis hypogaea HOM05D003890 ORTHO05D004514 8.8e-80 300.8 231 66.2
Actinidia16334 Actinidia chinensis HOM05D003890 ORTHO05D004514 1.1e-79 300.4 229 67.2
PGR102G1724 Punica granatum HOM05D003890 ORTHO05D004514 2.0e-79 299.7 240 66.2
MBI02_g05665_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 4.4e-79 298.5 229 65.1
MBI04_g36752_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 1.7e-78 296.6 235 65.5
TWI32G0323 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 2.2e-78 296.2 230 65.7
TWI60G0796 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 1.4e-77 293.5 229 64.6
PSO384G2797 Papaver somniferum HOM05D003890 ORTHO05D004514 4.1e-77 292.0 229 62.9
DCAR_002072 Daucus carota HOM05D003890 ORTHO05D004514 6.5e-75 284.6 229 62.9
THA.LOC104811066 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 6.5e-75 284.6 229 65.1
EL10Ac4g10247 Beta vulgaris HOM05D003890 ORTHO05D004514 1.1e-74 283.9 231 62.3
AUR62019304 Chenopodium quinoa HOM05D003890 ORTHO05D004514 2.5e-74 282.7 231 64.1
Eucgr.J00766 Eucalyptus grandis HOM05D003890 ORTHO05D004514 2.5e-74 282.7 228 63.6
THA.LOC104807531 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 5.5e-74 281.6 230 63.5
Hund07506 Selenicereus undatus HOM05D003890 ORTHO05D004514 2.1e-73 279.6 229 61.1
Lsat_1_v5_gn_1_66000 Lactuca sativa HOM05D003890 ORTHO05D004514 4.7e-73 278.5 229 62.9
Cc10_g03220 Coffea canephora HOM05D003890 ORTHO05D004514 1.8e-72 276.6 230 60.9
MELO3C014593.2 Cucumis melo HOM05D003890 ORTHO05D004514 1.8e-72 276.6 221 62.9
SGA_v2.0_scaffold8G04590 Striga asiatica HOM05D003890 ORTHO05D004514 1.8e-72 276.6 229 61.6
Lj1A330T24 Lonicera japonica HOM05D003890 ORTHO05D004514 3.0e-72 275.8 232 63.8
CsaV3_4G024270 Cucumis sativus L. HOM05D003890 ORTHO05D004514 2.0e-71 273.1 221 62.9
Rhsim01G0191800 Rhododendron simsii HOM05D003890 ORTHO05D004514 2.0e-71 273.1 229 62.4
MSTRG.21378 Avicennia marina HOM05D003890 ORTHO05D004514 2.6e-71 272.7 229 60.3
Oeu001480.1 Olea europaea HOM05D003890 ORTHO05D004514 7.4e-71 271.2 229 60.7
Hund22030 Selenicereus undatus HOM05D003890 ORTHO05D004514 4.8e-70 268.5 232 62.5
ATR0332G008 Amborella trichopoda HOM05D003890 ORTHO05D004514 6.3e-70 268.1 229 60.3
ClCG02G023230 Citrullus lanatus HOM05D003890 ORTHO05D004514 8.2e-70 267.7 221 62.4
Sopen11g025500 Solanum pennellii HOM05D003890 ORTHO05D004514 1.4e-69 266.9 224 60.7
Solyc11g065740.2 Solanum lycopersicum HOM05D003890 ORTHO05D004514 1.8e-69 266.5 224 60.7
Aa31LG4G8640 Aethionema arabicum HOM05D003890 ORTHO05D004514 4.1e-69 265.4 222 60.4
Lalb_Chr04g0247401 Lupinus albus HOM05D003890 ORTHO05D004514 5.3e-69 265.0 229 59.4
Lalb_Chr04g0247641 Lupinus albus HOM05D003890 ORTHO05D004514 5.3e-69 265.0 229 59.4
Oeu016684.1 Olea europaea HOM05D003890 ORTHO05D004514 7.0e-69 264.6 226 61.5
ECA240G2592 Erigeron canadensis HOM05D003890 ORTHO05D004514 9.1e-69 264.2 232 59.1
Nitab4.5_0001587g0060 Nicotiana tabacum HOM05D003890 ORTHO05D004514 9.1e-69 264.2 231 60.6
PGR119G1229 Punica granatum HOM05D003890 ORTHO05D004514 1.6e-68 263.5 233 59.2
PGSC0003DMG400007341 Solanum tuberosum HOM05D003890 ORTHO05D004514 1.6e-68 263.5 224 59.8
GSVIVG01025257001 Vitis vinifera HOM05D003890 ORTHO05D004514 2.6e-68 262.7 170 74.1
BcaB08g36566 Brassica carinata HOM05D003890 ORTHO05D004514 3.5e-68 262.3 229 59.8
MBI04_g40116_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 3.5e-68 262.3 246 57.7
Nitab4.5_0002741g0130 Nicotiana tabacum HOM05D003890 ORTHO05D004514 4.5e-68 261.9 231 59.7
Ah.04g161930 Amaranthus hybridus HOM05D003890 ORTHO05D004514 1.3e-67 260.4 231 59.7
Nn7g36206 Nelumbo nucifera HOM05D003890 ORTHO05D004514 1.3e-67 260.4 230 59.1
CAN.G599.2 Capsicum annuum HOM05D003890 ORTHO05D004514 1.7e-67 260.0 223 60.5
Phvul.008G283400 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 2.2e-67 259.6 224 58.5
BcaB01g04825 Brassica carinata HOM05D003890 ORTHO05D004514 3.8e-67 258.8 230 58.7
A03p09680 Brassica napus HOM05D003890 ORTHO05D004514 3.8e-67 258.8 230 58.3
BolC3t13596H Brassica oleracea HOM05D003890 ORTHO05D004514 3.8e-67 258.8 230 58.7
C03p11250 Brassica napus HOM05D003890 ORTHO05D004514 8.5e-67 257.7 229 58.5
arahy.Tifrunner.gnm1.ann1.HEYT23 Arachis hypogaea HOM05D003890 ORTHO05D004514 1.6e-65 253.4 231 59.3
Sed0005000 Sechium edule HOM05D003890 ORTHO05D004514 3.6e-65 252.3 221 60.6
Glyma.14G009900 Glycine max HOM05D003890 ORTHO05D004514 6.1e-65 251.5 230 59.6
Cc02_g28010 Coffea canephora HOM05D003890 ORTHO05D004514 1.0e-64 250.8 226 56.6
Eucgr.B03687 Eucalyptus grandis HOM05D003890 ORTHO05D004514 1.0e-64 250.8 190 68.4
GSVIVG01032095001 Vitis vinifera HOM05D003890 ORTHO05D004514 1.8e-64 250.0 152 76.3
CDE02G1666 Ceratophyllum demersum HOM05D003890 ORTHO05D004514 2.3e-64 249.6 231 55.4
BraA03t10284Z Brassica rapa HOM05D003890 ORTHO05D004514 3.0e-64 249.2 244 54.9
BcaC03g13717 Brassica carinata HOM05D003890 ORTHO05D004514 6.8e-64 248.1 229 58.5
BNapus_Darmor_BZH_scaffold_38p02060 Brassica napus HOM05D003890 ORTHO05D004514 8.8e-64 247.7 229 58.5
Lsat_1_v5_gn_6_47921 Lactuca sativa HOM05D003890 ORTHO05D004514 8.8e-64 247.7 226 56.2
AT5G19855 Arabidopsis thaliana HOM05D003890 ORTHO05D004514 1.5e-63 246.9 225 57.8
Carub.0006s1821 Capsella rubella HOM05D003890 ORTHO05D004514 2.0e-63 246.5 230 58.7
Peaxi162Scf00004g02340 Petunia axillaris HOM05D003890 ORTHO05D004514 2.0e-63 246.5 229 60.3
BcaB01g04844 Brassica carinata HOM05D003890 ORTHO05D004514 2.6e-63 246.1 229 58.1
MELO3C015193.2 Cucumis melo HOM05D003890 ORTHO05D004514 7.5e-63 244.6 189 68.3
HanXRQChr02g0056201 Helianthus annuus HOM05D003890 ORTHO05D004514 7.5e-63 244.6 227 55.9
AL6G31380 Arabidopsis lyrata HOM05D003890 ORTHO05D004514 1.7e-62 243.4 230 57.4
VMungo0647G1030 Vigna mungo HOM05D003890 ORTHO05D004514 3.7e-62 242.3 224 55.4
vmacro12718 Vaccinium macrocarpon HOM05D003890 ORTHO05D004514 1.1e-61 240.7 260 53.1
BolC2t06986H Brassica oleracea HOM05D003890 ORTHO05D004514 2.4e-61 239.6 240 55.8
MSTRG.18426 Avicennia marina HOM05D003890 ORTHO05D004514 3.1e-61 239.2 221 59.7
A02p05850 Brassica napus HOM05D003890 ORTHO05D004514 5.9e-60 235.0 251 53.4
BraA02t05537Z Brassica rapa HOM05D003890 ORTHO05D004514 5.9e-60 235.0 240 54.6
ECA233G4357 Erigeron canadensis HOM05D003890 ORTHO05D004514 1.7e-59 233.4 219 53.9
Thhalv10015929m.g Eutrema salsugineum HOM05D003890 ORTHO05D004514 3.8e-59 232.3 229 55.5
Migut.N02317 Erythranthe guttata HOM05D003890 ORTHO05D004514 5.0e-59 231.9 233 56.7
CARHR193020 Cardamine hirsuta HOM05D003890 ORTHO05D004514 1.1e-58 230.7 207 58.0
MSTRG.17029 Avicennia marina HOM05D003890 ORTHO05D004514 3.2e-58 229.2 217 53.5
Zm00001eb212460 Zea mays HOM05D003890 ORTHO05D004514 2.7e-57 226.1 148 70.9
Migut.D00602 Erythranthe guttata HOM05D003890 ORTHO05D004514 1.4e-56 223.8 232 53.4
MSTRG.28066 Avicennia marina HOM05D003890 ORTHO05D004514 4.0e-56 222.2 221 53.4
Nitab4.5_0004290g0020 Nicotiana tabacum HOM05D003890 ORTHO05D004514 5.2e-56 221.9 222 50.5
Sopen01g034250 Solanum pennellii HOM05D003890 ORTHO05D004514 8.8e-56 221.1 221 50.2
DCAR_003214 Daucus carota HOM05D003890 ORTHO05D004514 2.0e-55 219.9 176 63.1
Solyc01g087190.4 Solanum lycopersicum HOM05D003890 ORTHO05D004514 2.6e-55 219.5 221 50.2
Peaxi162Scf00953g00113 Petunia axillaris HOM05D003890 ORTHO05D004514 3.4e-55 219.2 221 51.1
PGSC0003DMG400006801 Solanum tuberosum HOM05D003890 ORTHO05D004514 5.7e-55 218.4 228 50.0
Nitab4.5_0001186g0010 Nicotiana tabacum HOM05D003890 ORTHO05D004514 2.2e-54 216.5 223 50.2
Os03g0807900 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 2.2e-54 216.5 160 63.8
CAN.G1560.2 Capsicum annuum HOM05D003890 ORTHO05D004514 2.8e-54 216.1 222 49.1
AUR62000123 Chenopodium quinoa HOM05D003890 ORTHO05D004514 2.7e-52 209.5 231 53.2
SalBow6G5214 Salvia bowleyana HOM05D003890 ORTHO05D004514 3.5e-52 209.1 204 51.5
arahy.Tifrunner.gnm1.ann1.13C5F2 Arachis hypogaea HOM05D003890 ORTHO05D004514 5.9e-52 208.4 230 53.0
SGA_v2.0_scaffold3G01504 Striga asiatica HOM05D003890 ORTHO05D004514 7.7e-52 208.0 219 51.1
SalBow6G3376 Salvia bowleyana HOM05D003890 ORTHO05D004514 1.7e-51 206.8 209 52.6
unitig_22.g6202 Utricularia gibba HOM05D003890 ORTHO05D004514 8.6e-51 204.5 213 53.5
HanXRQChr16g0524491 Helianthus annuus HOM05D003890 ORTHO05D004514 2.5e-50 203.0 199 54.8
Os07g0569600 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 4.2e-50 202.2 144 63.2
unitig_8.g2995 Utricularia gibba HOM05D003890 ORTHO05D004514 1.8e-48 196.8 244 46.7
Zm00001eb324740 Zea mays HOM05D003890 ORTHO05D004514 1.8e-48 196.8 172 54.1
HPP92_024873 Vanilla planifolia HOM05D003890 ORTHO05D004514 4.0e-48 195.7 247 45.3
arahy.Tifrunner.gnm1.ann1.V44IJD Arachis hypogaea HOM05D003890 ORTHO05D004514 8.9e-48 194.5 230 50.4
Pp3c12_1270 Physcomitrium patens HOM05D003890 ORTHO05D004514 1.2e-47 194.1 227 45.8
HanXRQChr01g0018191 Helianthus annuus HOM05D003890 ORTHO05D004514 9.8e-47 191.0 232 47.0
Mapoly0069s0007 Marchantia polymorpha HOM05D003890 ORTHO05D004514 9.8e-47 191.0 223 46.2
Mapoly0002s0228 Marchantia polymorpha HOM05D003890 ORTHO05D004514 1.8e-45 186.8 167 54.5
Pp3c9_10480 Physcomitrium patens HOM05D003890 ORTHO05D004514 3.2e-45 186.0 231 47.2
AagrBONN_evm.TU.Sc2ySwM_228.2147 Anthoceros agrestis HOM05D003890 ORTHO05D004514 4.1e-45 185.7 233 46.4
Ah.06g194180 Amaranthus hybridus HOM05D003890 ORTHO05D004514 1.0e-43 181.0 279 43.7
SMO275G0040 Selaginella moellendorffii HOM05D003890 ORTHO05D004514 1.0e-43 181.0 122 68.0
Sc09g0000720 Simmondsia chinensis HOM05D003890 ORTHO05D004514 1.4e-40 170.6 167 59.3
Lsat_1_v5_gn_4_31621 Lactuca sativa HOM05D003890 ORTHO05D004514 1.8e-40 170.2 136 64.0
BcaC04g19383 Brassica carinata HOM05D003890 ORTHO05D004514 1.3e-38 164.1 218 46.8
CBR_g21098 Chara braunii HOM05D003890 ORTHO05D004514 8.3e-38 161.4 196 45.4
C09p56300 Brassica napus HOM05D003890 ORTHO05D004514 2.0e-36 156.8 234 44.4
BolC9t58499H Brassica oleracea HOM05D003890 ORTHO05D004514 2.0e-36 156.8 234 44.4
SEGI_02367 Sequoiadendron giganteum HOM05D003890 ORTHO05D004514 2.0e-36 156.8 106 63.2
Sp6g24540 Schrenkiella parvula HOM05D003890 ORTHO05D004514 1.3e-35 154.1 229 43.7
CSS0039551 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 3.9e-35 152.5 82 84.1
arahy.Tifrunner.gnm1.ann1.11Y6U0 Arachis hypogaea HOM05D003890 ORTHO05D004514 2.9e-30 136.3 88 72.7
CSS0045152 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 1.9e-26 123.6 118 55.9
A10p19900 Brassica napus HOM05D003890 ORTHO05D004514 1.3e-22 110.9 63 77.8
BraA10t44065Z Brassica rapa HOM05D003890 ORTHO05D004514 2.5e-18 96.7 54 75.9
BcaC04g19382 Brassica carinata HOM05D000916 ORTHO05D008653 4.7e-17 92.4 58 70.7
SGA_v2.0_scaffold1G00707 Striga asiatica HOM05D003890 ORTHO05D004514 3.1e-08 63.2 142 35.9
COL.COLO4_36675 Corchorus olitorius HOM05D003890 ORTHO05D161578 1.5e-07 60.8 33 84.8


User provided reference genes

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