Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_07285 Corchorus olitorius HOM05D006150 ORTHO05D007745 1.3e-182 642.9 308 100.0
Thecc.03G240100 Theobroma cacao HOM05D006150 ORTHO05D007745 2.4e-165 585.5 309 90.6
Gohir.A12G212700 Gossypium hirsutum HOM05D006150 ORTHO05D007745 3.7e-158 561.6 309 88.3
Gorai.008G230800 Gossypium raimondii HOM05D006150 ORTHO05D007745 6.3e-158 560.8 309 87.7
Gohir.D12G215200 Gossypium hirsutum HOM05D006150 ORTHO05D007745 5.4e-157 557.8 309 87.1
Duzib084G0008 Durio zibethinus HOM05D006150 ORTHO05D007745 1.1e-154 550.1 309 86.4
Ciclev10021365m.g Citrus clementina HOM05D006150 ORTHO05D007745 3.1e-149 531.9 308 81.8
TAR636G1440 Trochodendron aralioides HOM05D006150 ORTHO05D007745 2.9e-147 525.4 297 82.8
Manes.01G089000 Manihot esculenta HOM05D006150 ORTHO05D007745 5.0e-147 524.6 304 81.9
TWI60G0542 Tripterygium wilfordii HOM05D006150 ORTHO05D007745 1.9e-146 522.7 307 81.8
Hma1.2p1_0570F.1_g180430 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 9.5e-146 520.4 288 83.0
Rhsim07G0136400 Rhododendron simsii HOM05D006150 ORTHO05D007745 4.7e-145 518.1 308 81.5
CSS0019555 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 8.9e-144 513.8 309 79.6
Lj8A277T42 Lonicera japonica HOM05D006150 ORTHO05D007745 1.2e-143 513.5 277 85.2
CARHR223610 Cardamine hirsuta HOM05D006150 ORTHO05D007745 2.6e-143 512.3 296 81.4
Atru.chr9.1206 Acer truncatum HOM05D006150 ORTHO05D007745 9.8e-143 510.4 309 79.3
PGSC0003DMG400026243 Solanum tuberosum HOM05D006150 ORTHO05D007745 2.9e-142 508.8 308 78.2
Potri.003G083600 Populus trichocarpa HOM05D006150 ORTHO05D007745 6.4e-142 507.7 314 79.3
ClCG10G005070 Citrullus lanatus HOM05D006150 ORTHO05D007745 8.3e-142 507.3 298 80.2
CsaV3_3G004750 Cucumis sativus L. HOM05D006150 ORTHO05D007745 1.1e-141 506.9 298 80.5
Sopen08g026350 Solanum pennellii HOM05D006150 ORTHO05D007745 1.1e-141 506.9 308 78.2
RcHm_v2.0_Chr7g0205681 Rosa chinensis HOM05D006150 ORTHO05D007745 1.4e-141 506.5 297 81.1
MBI04_g13858_MAGBIO Magnolia biondii HOM05D006150 ORTHO05D007745 1.8e-141 506.1 280 83.9
BraA03t14117Z Brassica rapa HOM05D006150 ORTHO05D007745 2.4e-141 505.8 294 81.3
AT4G17050 Arabidopsis thaliana HOM05D006150 ORTHO05D007745 3.2e-141 505.4 296 80.7
CANSAT21G0710 Cannabis sativa HOM05D006150 ORTHO05D007745 4.1e-141 505.0 300 79.7
THA.LOC104807929 Tarenaya hassleriana HOM05D006150 ORTHO05D007745 4.1e-141 505.0 278 83.5
BcaNung04656 Brassica carinata HOM05D006150 ORTHO05D007745 5.4e-141 504.6 294 80.6
Solyc08g077840.3 Solanum lycopersicum HOM05D006150 ORTHO05D007745 7.0e-141 504.2 299 78.9
A03p50280 Brassica napus HOM05D006150 ORTHO05D007745 2.7e-140 502.3 294 81.3
AL7G37660 Arabidopsis lyrata HOM05D006150 ORTHO05D007745 1.7e-139 499.6 294 80.3
Carub.0007s2437 Capsella rubella HOM05D006150 ORTHO05D007745 1.7e-139 499.6 300 78.7
MD04G1055500 Malus domestica HOM05D006150 ORTHO05D007745 1.7e-139 499.6 296 80.7
MSTRG.6640 Avicennia marina HOM05D006150 ORTHO05D007745 3.0e-139 498.8 277 83.0
Cfa012327 Carpinus fangiana HOM05D006150 ORTHO05D007745 3.0e-139 498.8 309 77.7
C07p48520 Brassica napus HOM05D006150 ORTHO05D007745 3.9e-139 498.4 300 79.0
BolC7t45360H Brassica oleracea HOM05D006150 ORTHO05D007745 3.9e-139 498.4 300 79.0
Eucgr.D02133 Eucalyptus grandis HOM05D006150 ORTHO05D007745 5.0e-139 498.0 293 81.6
Sp7g17140 Schrenkiella parvula HOM05D006150 ORTHO05D007745 5.0e-139 498.0 297 79.8
C07p48460 Brassica napus HOM05D006150 ORTHO05D007745 1.1e-138 496.9 301 79.4
CAN.G572.11 Capsicum annuum HOM05D006150 ORTHO05D007745 3.3e-138 495.4 297 79.5
Nn6g33757 Nelumbo nucifera HOM05D006150 ORTHO05D007745 3.3e-138 495.4 282 83.3
FAN04G1813 Fragaria x ananassa HOM05D006150 ORTHO05D007745 4.3e-138 495.0 301 78.1
PSO675G6476 Papaver somniferum HOM05D006150 ORTHO05D007745 5.6e-138 494.6 303 78.9
BcaC06g33538 Brassica carinata HOM05D006150 ORTHO05D007745 1.2e-137 493.4 301 78.7
BolC1t02493H Brassica oleracea HOM05D006150 ORTHO05D007745 1.6e-137 493.0 297 80.1
Sed0022790 Sechium edule HOM05D006150 ORTHO05D007745 2.8e-137 492.3 298 78.2
FvH4_5g20400 Fragaria vesca HOM05D006150 ORTHO05D007745 6.2e-137 491.1 282 81.2
HanXRQChr17g0534011 Helianthus annuus HOM05D006150 ORTHO05D007745 8.0e-137 490.7 305 75.7
FAN08G0760 Fragaria x ananassa HOM05D006150 ORTHO05D007745 1.8e-136 489.6 294 78.6
C07p48390 Brassica napus HOM05D006150 ORTHO05D007745 2.3e-136 489.2 279 83.2
Cc08_g11330 Coffea canephora HOM05D006150 ORTHO05D007745 4.0e-136 488.4 296 77.0
PSO732G0290 Papaver somniferum HOM05D006150 ORTHO05D007745 4.0e-136 488.4 297 78.5
BraA01t01953Z Brassica rapa HOM05D006150 ORTHO05D007745 5.2e-136 488.0 302 77.8
CiPaw.11G072300 Carya illinoinensis HOM05D006150 ORTHO05D007745 2.6e-135 485.7 297 76.8
DCAR_008330 Daucus carota HOM05D006150 ORTHO05D007745 2.6e-135 485.7 296 78.7
arahy.Tifrunner.gnm1.ann1.IPM3U6 Arachis hypogaea HOM05D006150 ORTHO05D007745 4.4e-135 485.0 298 77.5
EL10Ac5g12270 Beta vulgaris HOM05D006150 ORTHO05D007745 7.5e-135 484.2 304 75.7
Haze_08363 Corylus avellana HOM05D006150 ORTHO05D007745 9.8e-135 483.8 334 71.9
BcaNung00130 Brassica carinata HOM05D006150 ORTHO05D007745 1.3e-134 483.4 298 78.5
SalBow7G3619 Salvia bowleyana HOM05D006150 ORTHO05D007745 1.7e-134 483.0 308 76.0
ECA234G2169 Erigeron canadensis HOM05D006150 ORTHO05D007745 6.4e-134 481.1 298 75.5
PGR031G0533 Punica granatum HOM05D006150 ORTHO05D007745 1.9e-133 479.6 260 84.6
Lalb_Chr09g0329771 Lupinus albus HOM05D006150 ORTHO05D007745 2.4e-133 479.2 299 74.9
arahy.Tifrunner.gnm1.ann1.YY6LCE Arachis hypogaea HOM05D006150 ORTHO05D007745 1.6e-132 476.5 298 77.2
Ca_22017_v3 Cicer arietinum L. HOM05D006150 ORTHO05D007745 3.5e-132 475.3 291 75.6
Lj4g0002003 Lotus japonicus HOM05D006150 ORTHO05D007745 7.8e-132 474.2 303 73.9
Medtr4g099290 Medicago truncatula HOM05D006150 ORTHO05D007745 1.0e-131 473.8 277 78.3
ATR0665G013 Amborella trichopoda HOM05D006150 ORTHO05D007745 3.0e-131 472.2 311 75.9
Nitab4.5_0000500g0240 Nicotiana tabacum HOM05D006150 ORTHO05D007745 3.0e-131 472.2 313 75.1
Ah.12g053980 Amaranthus hybridus HOM05D006150 ORTHO05D007745 3.9e-131 471.9 295 74.2
PSO732G0039 Papaver somniferum HOM05D006150 ORTHO05D007745 3.9e-131 471.9 274 80.7
VMungo0251G1767 Vigna mungo HOM05D006150 ORTHO05D007745 3.9e-131 471.9 289 73.7
Glyma.05G066500 Glycine max HOM05D006150 ORTHO05D007745 5.0e-131 471.5 289 75.4
Glyma.17G148400 Glycine max HOM05D006150 ORTHO05D007745 1.1e-130 470.3 289 75.1
Phvul.003G225600 Phaseolus vulgaris HOM05D006150 ORTHO05D007745 2.5e-130 469.2 288 73.6
Aqoxy5G02622 Aquilegia oxysepala HOM05D006150 ORTHO05D007745 2.8e-129 465.7 309 72.8
TPR.G25747 Trifolium pratense HOM05D006150 ORTHO05D007745 1.1e-128 463.8 300 73.3
unitig_746.g26644 Utricularia gibba HOM05D006150 ORTHO05D007745 1.4e-128 463.4 296 74.3
Nitab4.5_0009451g0030 Nicotiana tabacum HOM05D006150 ORTHO05D007745 1.8e-128 463.0 314 73.6
Os07g0495000 Oryza sativa ssp. japonica HOM05D006150 ORTHO05D007745 2.3e-128 462.6 306 72.2
A01p20260 Brassica napus HOM05D006150 ORTHO05D007745 5.2e-128 461.5 289 77.2
Zm00001eb322060 Zea mays HOM05D006150 ORTHO05D007745 2.9e-126 455.7 279 76.0
CDE12G0966 Ceratophyllum demersum HOM05D006150 ORTHO05D007745 4.9e-126 454.9 296 73.6
QL12p008732 Quercus lobata HOM05D006150 ORTHO05D007745 4.9e-126 454.9 400 58.5
Thhalv10026866m.g Eutrema salsugineum HOM05D006150 ORTHO05D007745 2.1e-124 449.5 309 74.1
Peaxi162Scf00301g00519 Petunia axillaris HOM05D006150 ORTHO05D007745 3.3e-122 442.2 289 72.3
Actinidia02195 Actinidia chinensis HOM05D006150 ORTHO05D007745 3.1e-120 435.6 272 76.8
HPP92_025744 Vanilla planifolia HOM05D006150 ORTHO05D007745 8.9e-120 434.1 280 74.6
BcaC09g50439 Brassica carinata HOM05D006150 ORTHO05D007745 1.5e-119 433.3 298 73.2
C01p25410 Brassica napus HOM05D006150 ORTHO05D007745 1.5e-119 433.3 298 73.2
Psat4g076080 Pisum sativum HOM05D006150 ORTHO05D007745 1.3e-118 430.3 270 74.1
vmacro00832 Vaccinium macrocarpon HOM05D006150 ORTHO05D007745 1.3e-118 430.3 296 72.0
Dinv28876 Davidia involucrata HOM05D006150 ORTHO05D007745 1.1e-117 427.2 246 81.7
SEGI_33649 Sequoiadendron giganteum HOM05D006150 ORTHO05D007745 5.1e-115 418.3 259 77.6
Aa31LG2G13130 Aethionema arabicum HOM05D006150 ORTHO05D007745 1.5e-114 416.8 320 65.0
Sc01g0007980 Simmondsia chinensis HOM05D006150 ORTHO05D007745 3.3e-114 415.6 244 77.0
Prupe.5G055300 Prunus persica HOM05D006150 ORTHO05D007745 3.9e-107 392.1 212 87.3
Pp3c9_12580 Physcomitrium patens HOM05D006150 ORTHO05D007745 1.6e-105 386.7 304 64.5
Oeu012348.1 Olea europaea HOM05D006150 ORTHO05D007745 4.5e-103 378.6 211 84.8
AagrBONN_evm.TU.Sc2ySwM_228.2274 Anthoceros agrestis HOM05D006150 ORTHO05D007745 9.3e-101 370.9 249 71.5
GSVIVG01003685001 Vitis vinifera HOM05D006150 ORTHO05D007745 1.8e-99 366.7 281 65.1
Mapoly0072s0097 Marchantia polymorpha HOM05D006150 ORTHO05D007745 3.0e-99 365.9 258 65.9
SGA_v2.0_scaffold181G39680 Striga asiatica HOM05D006150 ORTHO05D007745 3.7e-97 359.0 243 73.7
AUR62007167 Chenopodium quinoa HOM05D006150 ORTHO05D007745 4.5e-95 352.1 202 80.7
AUR62018839 Chenopodium quinoa HOM05D006150 ORTHO05D007745 9.9e-95 350.9 202 79.2
Lsat_1_v5_gn_3_15361 Lactuca sativa HOM05D006150 ORTHO05D007745 4.9e-94 348.6 248 68.5
Actinidia25909 Actinidia chinensis HOM05D006150 ORTHO05D007745 1.4e-77 293.9 308 54.5
Potri.001G150800 Populus trichocarpa HOM05D006150 ORTHO05D007745 3.6e-76 289.3 206 70.4
MCO07G379 Micromonas commoda HOM05D006150 ORTHO05D007745 6.5e-70 268.5 269 49.8
Cre06.g290000 Chlamydomonas reinhardtii HOM05D006150 ORTHO05D007745 1.9e-69 266.9 259 51.4
MD06G1047100 Malus domestica HOM05D006150 ORTHO05D007745 3.0e-67 259.6 270 53.3
MELO3C014174.2 Cucumis melo HOM05D006150 ORTHO05D007745 8.0e-60 235.0 291 49.5
Sabra01G0120800 Salix brachista HOM05D006150 ORTHO05D007745 1.8e-59 233.8 185 64.9
Hma1.2p1_0570F.1_g180440 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 6.7e-59 231.9 125 84.0
MCO04G282 Micromonas commoda HOM05D006150 ORTHO05D007745 1.4e-56 224.2 262 46.2
FAN18G0603 Fragaria x ananassa HOM05D006150 ORTHO05D007745 6.5e-54 215.3 139 74.1
CSS0048254 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 5.4e-40 169.1 97 82.5
Sabra01G0120600 Salix brachista HOM05D006150 ORTHO05D007745 3.8e-38 162.9 162 55.6
PSO717G0125 Papaver somniferum HOM05D006150 ORTHO05D007745 1.2e-36 157.9 119 66.4
BcaC01g03436 Brassica carinata HOM05D006150 ORTHO05D007745 5.2e-35 152.5 108 68.5
Cpa.g.sc98.38 Carica papaya HOM05D006150 ORTHO05D007745 1.6e-31 141.0 81 77.8
CBR_g38093 Chara braunii HOM05D006150 ORTHO05D007745 2.8e-28 130.2 66 83.3
GSVIVG01021810001 Vitis vinifera HOM05D006150 ORTHO05D007745 3.4e-18 96.7 67 68.7
Cpa.g.sc98.35 Carica papaya HOM05D006150 ORTHO05D007745 2.1e-15 87.4 56 71.4
Oeu040463.1 Olea europaea HOM05D001574 ORTHO05D000708 2.8e-12 77.0 57 68.4
Cpa.g.sc3814.1 Carica papaya HOM05D006150 ORTHO05D007745 6.8e-11 72.4 38 81.6
MELO3C000773.2 Cucumis melo HOM05D006150 ORTHO05D007745 1.1e-08 65.1 40 80.0
Lsat_1_v5_gn_6_74120 Lactuca sativa HOM05D006150 ORTHO05D233887 2.4e-08 63.9 33 81.8
Lsat_1_v5_gn_2_23540 Lactuca sativa HOM05D002379 ORTHO05D003469 3.9e-06 56.6 47 53.2
Lsat_1_v5_gn_8_14120 Lactuca sativa HOM05D002379 ORTHO05D021531 3.9e-06 56.6 47 53.2
Lsat_1_v5_gn_9_81181 Lactuca sativa HOM05D002379 ORTHO05D003469 3.9e-06 56.6 47 53.2


User provided reference genes

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