Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_07280 Corchorus olitorius HOM05D000764 ORTHO05D004953 0.0e+00 1521.1 766 100.0
Duzib128G0342 Durio zibethinus HOM05D000764 ORTHO05D004953 0.0e+00 1325.1 776 86.2
Gorai.004G264800 Gossypium raimondii HOM05D000764 ORTHO05D004953 0.0e+00 1307.0 774 85.4
Gohir.D08G248200 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 1302.0 774 85.1
Gohir.A08G227900 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 1300.0 774 85.4
Atru.chr3.2095 Acer truncatum HOM05D000764 ORTHO05D004953 0.0e+00 1209.1 778 78.7
Cpa.g.sc119.44 Carica papaya HOM05D000764 ORTHO05D004953 0.0e+00 1207.2 776 79.0
Cfa009565 Carpinus fangiana HOM05D000764 ORTHO05D004953 0.0e+00 1184.9 774 78.0
CiPaw.13G176800 Carya illinoinensis HOM05D000764 ORTHO05D004953 0.0e+00 1178.3 779 77.7
Manes.14G121800 Manihot esculenta HOM05D000764 ORTHO05D004953 0.0e+00 1176.8 777 77.0
QL01p009034 Quercus lobata HOM05D000764 ORTHO05D004953 0.0e+00 1176.0 778 78.3
Haze_22943 Corylus avellana HOM05D000764 ORTHO05D004953 0.0e+00 1172.9 792 76.3
Dinv33723 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 1166.4 779 76.8
TWI32G0740 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 1158.7 781 74.4
Ciclev10014014m.g Citrus clementina HOM05D000764 ORTHO05D004953 0.0e+00 1152.5 777 75.5
CSS0037597 Camellia sinensis var. sinensis HOM05D000764 ORTHO05D004953 0.0e+00 1146.3 772 75.5
TWI60G0851 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 1143.6 785 73.6
Sabra01G0002900 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 1141.3 772 74.6
Potri.001G004200 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 1140.6 772 75.3
Potri.003G220800 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 1137.5 772 75.1
Sabra03G0164300 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 1130.9 773 74.8
FvH4_3g45550 Fragaria vesca HOM05D000764 ORTHO05D004953 0.0e+00 1128.6 773 75.5
FAN21G0270 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 1128.2 773 75.4
FAN11G0762 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 1126.7 773 75.4
RcHm_v2.0_Chr5g0083741 Rosa chinensis HOM05D000764 ORTHO05D004953 0.0e+00 1125.9 776 76.2
Prupe.6G003600 Prunus persica HOM05D000764 ORTHO05D004953 0.0e+00 1122.8 773 74.3
FAN25G3812 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 1117.4 773 75.0
MD03G1004100 Malus domestica HOM05D000764 ORTHO05D004953 0.0e+00 1114.0 773 74.8
FAN16G0168 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 1111.3 773 74.9
arahy.Tifrunner.gnm1.ann1.ML2TY5 Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 1094.0 771 73.3
TAR623G0474 Trochodendron aralioides HOM05D000764 ORTHO05D004953 0.0e+00 1092.4 772 72.8
CANSAT11G1226 Cannabis sativa HOM05D000764 ORTHO05D004953 0.0e+00 1091.6 778 73.3
arahy.Tifrunner.gnm1.ann1.W7TQKX Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 1086.2 771 73.4
Glyma.18G000100 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 1084.3 771 71.6
Phvul.001G269300 Phaseolus vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 1083.9 771 71.6
ClCG03G014510 Citrullus lanatus HOM05D000764 ORTHO05D004953 0.0e+00 1083.2 773 70.6
CsaV3_1G041680 Cucumis sativus L. HOM05D000764 ORTHO05D004953 0.0e+00 1082.0 773 70.9
Glyma.11G256800 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 1077.8 771 71.6
Cc01_g00030 Coffea canephora HOM05D000764 ORTHO05D004953 2.1e-311 1072.0 776 70.9
Sed0024847 Sechium edule HOM05D000764 ORTHO05D004953 4.7e-311 1070.8 773 69.9
THA.LOC104810327 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 7.9e-311 1070.1 775 70.3
PGR119G0322 Punica granatum HOM05D000764 ORTHO05D004953 5.2e-310 1067.4 778 71.2
Lj6g0018726 Lotus japonicus HOM05D000764 ORTHO05D004953 1.2e-309 1066.2 771 71.2
MELO3C015581.2 Cucumis melo HOM05D000764 ORTHO05D004953 8.3e-308 1060.1 834 65.9
Medtr3g083500 Medicago truncatula HOM05D000764 ORTHO05D004953 9.1e-307 1056.6 772 70.6
TPR.G19327 Trifolium pratense HOM05D000764 ORTHO05D004953 7.7e-306 1053.5 772 69.9
Eucgr.J01768 Eucalyptus grandis HOM05D000764 ORTHO05D004953 1.7e-305 1052.4 772 70.9
THA.LOC104822680 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 6.5e-305 1050.4 777 68.9
Ca_16376_v3 Cicer arietinum L. HOM05D000764 ORTHO05D004953 8.6e-305 1050.0 773 70.8
Lalb_Chr23g0278471 Lupinus albus HOM05D000764 ORTHO05D004953 3.2e-304 1048.1 770 70.4
DCAR_029576 Daucus carota HOM05D000764 ORTHO05D004953 5.5e-304 1047.3 775 68.1
Psat5g101160 Pisum sativum HOM05D000764 ORTHO05D004953 4.7e-303 1044.3 772 69.7
SalBow6G5302 Salvia bowleyana HOM05D000764 ORTHO05D004953 3.0e-302 1041.6 777 68.9
Sp1g41000 Schrenkiella parvula HOM05D000764 ORTHO05D004953 2.6e-301 1038.5 777 69.2
MSTRG.16793 Avicennia marina HOM05D000764 ORTHO05D004953 1.1e-299 1033.1 780 69.4
vmacro06919 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 1.2e-298 1029.6 797 70.4
Hma1.2p1_0449F.1_g155090 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 7.8e-298 1026.9 779 69.3
MBI11_g24613_MAGBIO Magnolia biondii HOM05D000764 ORTHO05D004953 6.6e-297 1023.8 781 67.2
Aa31LG10G1120 Aethionema arabicum HOM05D000764 ORTHO05D004953 1.5e-296 1022.7 777 68.6
Carub.0001s4383 Capsella rubella HOM05D000764 ORTHO05D004953 2.5e-296 1021.9 777 68.1
AT1G55325 Arabidopsis thaliana HOM05D000764 ORTHO05D004953 7.3e-296 1020.4 779 68.4
Rhsim03G0149100 Rhododendron simsii HOM05D000764 ORTHO05D004953 8.0e-295 1016.9 800 69.6
CARHR044980 Cardamine hirsuta HOM05D000764 ORTHO05D004953 4.0e-294 1014.6 776 67.9
Thhalv10011178m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 1.5e-293 1012.7 777 68.1
AL1G63370 Arabidopsis lyrata HOM05D000764 ORTHO05D004953 4.4e-293 1011.1 772 68.1
EL10Ac4g10385 Beta vulgaris HOM05D000764 ORTHO05D004953 4.4e-293 1011.1 778 67.5
A06p00260 Brassica napus HOM05D000764 ORTHO05D004953 2.9e-292 1008.4 777 67.4
BraA06t23242Z Brassica rapa HOM05D000764 ORTHO05D004953 2.9e-292 1008.4 777 67.4
Nn7g35865 Nelumbo nucifera HOM05D000764 ORTHO05D004953 2.0e-290 1002.3 776 66.8
Sopen04g010120 Solanum pennellii HOM05D000764 ORTHO05D004953 7.8e-290 1000.3 778 67.5
C06p10270 Brassica napus HOM05D000764 ORTHO05D004953 1.7e-289 999.2 778 66.7
BolC6t36102H Brassica oleracea HOM05D000764 ORTHO05D004953 1.7e-289 999.2 778 66.7
CAN.G1237.43 Capsicum annuum HOM05D000764 ORTHO05D004953 1.5e-288 996.1 778 67.2
Aqoxy3G01104 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 5.2e-286 987.6 776 67.4
Lj2A763G35 Lonicera japonica HOM05D000764 ORTHO05D004953 3.7e-284 981.5 865 62.4
Hund07595 Selenicereus undatus HOM05D000764 ORTHO05D004953 4.9e-284 981.1 843 62.2
Migut.L00381 Erythranthe guttata HOM05D000764 ORTHO05D004953 4.1e-283 978.0 768 66.1
Peaxi162Scf00970g00016 Petunia axillaris HOM05D000764 ORTHO05D004953 7.0e-283 977.2 778 66.6
ECA233G5672 Erigeron canadensis HOM05D000764 ORTHO05D004953 3.5e-282 974.9 772 66.6
Oeu021897.1 Olea europaea HOM05D000764 ORTHO05D004953 7.8e-282 973.8 801 64.4
Solyc04g039950.4 Solanum lycopersicum HOM05D000764 ORTHO05D004953 1.1e-280 969.9 777 66.3
AUR62040904 Chenopodium quinoa HOM05D000764 ORTHO05D004953 1.5e-280 969.5 780 64.9
BraA05t20647Z Brassica rapa HOM05D000764 ORTHO05D004953 1.9e-280 969.1 767 66.9
A05p17530 Brassica napus HOM05D000764 ORTHO05D004953 2.8e-279 965.3 767 66.8
BolC6t36790H Brassica oleracea HOM05D000764 ORTHO05D004953 6.2e-279 964.1 767 66.4
HanXRQChr13g0405791 Helianthus annuus HOM05D000764 ORTHO05D004953 1.4e-278 963.0 784 65.8
C06p15980 Brassica napus HOM05D000764 ORTHO05D004953 1.1e-275 953.4 767 65.8
AUR62019164 Chenopodium quinoa HOM05D000764 ORTHO05D004953 1.4e-275 953.0 828 61.2
PSO339G2492 Papaver somniferum HOM05D000764 ORTHO05D004953 1.8e-270 936.0 780 64.2
SGA_v2.0_scaffold58G20565 Striga asiatica HOM05D000764 ORTHO05D004953 1.6e-263 912.9 779 62.8
BcaC08g44192 Brassica carinata HOM05D000764 ORTHO05D004953 1.9e-259 899.4 767 63.6
Aqoxy368s001 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 1.6e-255 886.3 707 67.2
Lsat_1_v5_gn_6_53100 Lactuca sativa HOM05D000764 ORTHO05D004953 6.2e-247 857.8 785 60.9
GSVIVG01025465001 Vitis vinifera HOM05D000764 ORTHO05D004953 2.0e-245 852.8 622 71.2
ATR0490G003 Amborella trichopoda HOM05D000764 ORTHO05D004953 3.9e-241 838.6 781 59.0
SalBow6G3750 Salvia bowleyana HOM05D000764 ORTHO05D004953 9.6e-240 833.9 772 60.2
VMungo1080G1230 Vigna mungo HOM05D000764 ORTHO05D004953 7.2e-227 791.2 573 70.5
Zm00001eb379470 Zea mays HOM05D000764 ORTHO05D004953 2.3e-225 786.2 782 54.6
Nitab4.5_0000799g0100 Nicotiana tabacum HOM05D000764 ORTHO05D004953 8.5e-220 767.7 571 69.9
CDE10G0573 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 1.8e-217 760.0 768 55.3
CDE10G0575 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 2.3e-217 759.6 770 55.6
Nitab4.5_0003134g0150 Nicotiana tabacum HOM05D000764 ORTHO05D004953 2.0e-216 756.5 574 69.0
SEGI_04814 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 5.5e-211 738.4 792 50.6
SEGI_09587 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 5.5e-211 738.4 792 50.6
SHI31301 Sapria himalayana HOM05D000764 ORTHO05D004953 9.4e-195 684.5 992 43.5
Dinv06519 Davidia involucrata HOM05D000764 ORTHO05D004953 1.5e-184 650.6 450 74.4
Migut.L00371 Erythranthe guttata HOM05D000764 ORTHO05D004953 1.1e-179 634.4 425 72.0
Sc21g0002730 Simmondsia chinensis HOM05D000764 ORTHO05D004953 3.9e-156 556.2 448 65.0
Os05g0447500 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 1.5e-155 554.3 580 51.7
Actinidia02700 Actinidia chinensis HOM05D000764 ORTHO05D004953 9.3e-142 508.4 319 77.4
vmacro06915 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 3.5e-125 453.4 509 52.8
Actinidia02701 Actinidia chinensis HOM05D000764 ORTHO05D004953 8.5e-111 405.6 317 68.5
Mapoly0029s0052 Marchantia polymorpha HOM05D000764 ORTHO05D004953 1.2e-101 375.2 796 34.3
Pp3c11_22280 Physcomitrium patens HOM05D000764 ORTHO05D004953 1.0e-100 372.1 797 33.4
Thecc.05G133300 Theobroma cacao HOM05D000764 ORTHO05D004953 1.1e-99 368.6 218 89.9
Aqoxy6G02541 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 2.1e-93 347.8 287 65.2
CiPaw.14G136600 Carya illinoinensis HOM05D000764 ORTHO05D004953 2.6e-88 330.9 242 71.1
VMungo1080G1023 Vigna mungo HOM05D000764 ORTHO05D004953 2.2e-82 311.2 194 78.9
Nitab4.5_0005544g0060 Nicotiana tabacum HOM05D000764 ORTHO05D004953 1.5e-78 298.5 198 73.7
SMO365G0018 Selaginella moellendorffii HOM05D000764 ORTHO05D004953 2.7e-72 277.7 769 29.3
AagrBONN_evm.TU.Sc2ySwM_117.2245 Anthoceros agrestis HOM05D000764 ORTHO05D004953 8.9e-68 262.7 651 32.0
Dinv39954 Davidia involucrata HOM05D000764 ORTHO05D004953 6.6e-63 246.5 293 50.5
CBR_g38308 Chara braunii HOM05D000019 ORTHO05D000048 6.2e-45 186.8 970 25.3
Dinv39953 Davidia involucrata HOM05D000100 ORTHO05D000052 2.0e-35 155.2 130 69.2
Nn1g03529 Nelumbo nucifera HOM05D000764 ORTHO05D004953 1.2e-27 129.4 72 76.4
Psat5g238800 Pisum sativum HOM05D000764 ORTHO05D002785 2.1e-24 118.6 85 74.1
Psat5g238960 Pisum sativum HOM05D000764 ORTHO05D002785 2.1e-24 118.6 85 74.1
Pp3c7_4610 Physcomitrium patens HOM05D000764 ORTHO05D004953 6.6e-23 113.6 264 31.4
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 1.9e-22 112.1 122 59.8
Psat2g093280 Pisum sativum HOM05D002199 ORTHO05D007829 4.3e-22 110.9 108 61.1
HPP92_009741 Vanilla planifolia HOM05D000764 ORTHO05D004953 4.3e-22 110.9 216 38.9
CiPaw.14G136500 Carya illinoinensis HOM05D000764 ORTHO05D004953 9.9e-19 99.8 66 74.2
Sc16g0012210 Simmondsia chinensis HOM05D000764 ORTHO05D004953 6.9e-12 77.0 164 36.0
SMO358G0275 Selaginella moellendorffii HOM05D015080 ORTHO05D019362 1.0e-07 63.2 76 36.8


User provided reference genes

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