Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_07108 Corchorus olitorius HOM05D004039 ORTHO05D004573 1.3e-91 339.7 180 100.0
Thecc.01G239800 Theobroma cacao HOM05D004039 ORTHO05D004573 1.4e-59 233.4 183 71.0
Gohir.D09G002400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 7.2e-53 211.1 178 67.4
Gorai.006G002900 Gossypium raimondii HOM05D004039 ORTHO05D004573 2.1e-52 209.5 178 67.4
Gohir.A09G002600 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.1e-50 203.8 180 65.6
Gohir.D03G099900 Gossypium hirsutum HOM05D004039 ORTHO05D004573 3.3e-50 202.2 177 66.1
Gorai.003G105000 Gossypium raimondii HOM05D004039 ORTHO05D004573 3.3e-50 202.2 177 66.1
Gohir.A03G073400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 9.7e-50 200.7 177 65.5
Duzib205G0448 Durio zibethinus HOM05D001017 ORTHO05D001025 1.1e-48 197.2 175 65.1
THA.LOC104827510 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 6.1e-44 181.4 185 56.8
Cpa.g.sc686.1 Carica papaya HOM05D004039 ORTHO05D004573 2.3e-43 179.5 179 61.5
Ciclev10030001m.g Citrus clementina HOM05D004039 ORTHO05D004573 6.7e-43 177.9 200 58.0
TWI75G0895 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 4.4e-42 175.3 189 58.2
Manes.08G099400 Manihot esculenta HOM05D004039 ORTHO05D004573 2.8e-41 172.6 192 55.7
CiPaw.06G111200 Carya illinoinensis HOM05D004039 ORTHO05D004573 4.8e-41 171.8 204 51.0
Eucgr.B03568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 6.3e-41 171.4 196 54.6
BcaB04g19545 Brassica carinata HOM05D004039 ORTHO05D004573 2.4e-40 169.5 184 56.0
Prupe.1G211600 Prunus persica HOM05D004039 ORTHO05D004573 3.1e-40 169.1 202 53.5
Haze_12527 Corylus avellana HOM05D004039 ORTHO05D004573 4.1e-40 168.7 189 56.6
FvH4_4g22190 Fragaria vesca HOM05D004039 ORTHO05D004573 1.2e-39 167.2 190 53.7
Aa31LG3G14220 Aethionema arabicum HOM05D004039 ORTHO05D004573 1.6e-39 166.8 188 55.3
Thhalv10005412m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 1.6e-39 166.8 184 54.9
FAN17G1354 Fragaria x ananassa HOM05D004039 ORTHO05D004573 2.0e-39 166.4 192 53.6
QL03p048351 Quercus lobata HOM05D004039 ORTHO05D004573 3.5e-39 165.6 197 52.8
BraA02t08705Z Brassica rapa HOM05D004039 ORTHO05D004573 4.5e-39 165.2 184 55.4
MD13G1134000 Malus domestica HOM05D004039 ORTHO05D004573 7.7e-39 164.5 201 54.7
A02p37190 Brassica napus HOM05D004039 ORTHO05D004573 1.0e-38 164.1 184 54.3
BcaC04g23799 Brassica carinata HOM05D004039 ORTHO05D004573 1.7e-38 163.3 184 55.4
FAN07G2708 Fragaria x ananassa HOM05D004039 ORTHO05D004573 1.7e-38 163.3 190 53.2
MD16G1144600 Malus domestica HOM05D004039 ORTHO05D004573 2.2e-38 162.9 203 51.7
Atru.chr12.1473 Acer truncatum HOM05D004039 ORTHO05D004573 2.9e-38 162.5 192 55.2
BcaB07g29998 Brassica carinata HOM05D004039 ORTHO05D004573 2.9e-38 162.5 183 54.1
Potri.003G160300 Populus trichocarpa HOM05D004039 ORTHO05D004573 2.9e-38 162.5 199 54.8
THA.LOC104801433 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 2.9e-38 162.5 193 51.3
MELO3C026747.2 Cucumis melo HOM05D004039 ORTHO05D004573 8.5e-38 161.0 196 52.0
BcaC03g17621 Brassica carinata HOM05D004039 ORTHO05D004573 1.9e-37 159.8 183 54.1
C02p56210 Brassica napus HOM05D004039 ORTHO05D004573 1.9e-37 159.8 183 54.1
BolC2t11677H Brassica oleracea HOM05D004039 ORTHO05D004573 1.9e-37 159.8 183 54.1
BolC9t53384H Brassica oleracea HOM05D004039 ORTHO05D004573 1.9e-37 159.8 184 54.3
AT5G47920 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 5.5e-37 158.3 186 53.8
Cfa009471 Carpinus fangiana HOM05D004039 ORTHO05D004573 5.5e-37 158.3 191 53.9
Carub.0008s0748 Capsella rubella HOM05D004039 ORTHO05D004573 7.2e-37 157.9 190 52.1
RcHm_v2.0_Chr4g0428421 Rosa chinensis HOM05D004039 ORTHO05D004573 9.4e-37 157.5 195 52.3
GSVIVG01032947001 Vitis vinifera HOM05D004039 ORTHO05D004573 1.2e-36 157.1 199 49.2
CiPaw.05G098500 Carya illinoinensis HOM05D004039 ORTHO05D004573 2.7e-36 156.0 191 55.0
ClCG10G013010 Citrullus lanatus HOM05D004039 ORTHO05D004573 4.7e-36 155.2 196 51.0
CARHR291780 Cardamine hirsuta HOM05D004039 ORTHO05D004573 6.1e-36 154.8 184 53.8
AL8G19920 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 8.0e-36 154.5 187 52.4
CSS0018669 Camellia sinensis var. sinensis HOM05D004039 ORTHO05D004573 1.8e-35 153.3 209 51.7
PGR102G1502 Punica granatum HOM05D004039 ORTHO05D004573 4.0e-35 152.1 194 52.6
C09p04550 Brassica napus HOM05D004039 ORTHO05D004573 5.2e-35 151.8 184 52.7
BraA09t36066Z Brassica rapa HOM05D004039 ORTHO05D004573 5.2e-35 151.8 184 51.1
Sc11g0000030 Simmondsia chinensis HOM05D004039 ORTHO05D004573 7.5e-34 147.9 198 49.5
CANSAT64G1067 Cannabis sativa HOM05D004039 ORTHO05D004573 1.3e-33 147.1 217 48.8
MBI11_g23197_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 1.3e-33 147.1 198 50.5
Sed0004494 Sechium edule HOM05D004039 ORTHO05D004573 1.7e-33 146.7 195 51.3
Hma1.2p1_0738F.1_g210940 Hydrangea macrophylla HOM05D004039 ORTHO05D004573 2.8e-33 146.0 196 48.5
TAR374G0420 Trochodendron aralioides HOM05D004039 ORTHO05D004573 6.3e-33 144.8 181 50.8
EL10Ac2g04246 Beta vulgaris HOM05D004039 ORTHO05D004573 8.3e-33 144.4 218 45.9
QL02p068241 Quercus lobata HOM05D004039 ORTHO05D004573 8.3e-33 144.4 211 46.4
AUR62031493 Chenopodium quinoa HOM05D004039 ORTHO05D004573 1.1e-32 144.1 216 45.4
Sabra03G0116500 Salix brachista HOM05D004039 ORTHO05D004573 1.4e-32 143.7 198 50.5
Thecc.04G052000 Theobroma cacao HOM05D004039 ORTHO05D004573 1.4e-32 143.7 214 44.4
HanXRQChr10g0319941 Helianthus annuus HOM05D004039 ORTHO05D004573 2.4e-32 142.9 203 47.8
HPP92_025084 Vanilla planifolia HOM05D004039 ORTHO05D004573 4.1e-32 142.1 197 47.2
BolC7t44401H Brassica oleracea HOM05D004039 ORTHO05D004573 7.0e-32 141.4 172 50.0
A09p04290 Brassica napus HOM05D004039 ORTHO05D004573 1.2e-31 140.6 177 50.3
Sp2g18420 Schrenkiella parvula HOM05D004039 ORTHO05D004573 3.5e-31 139.0 155 54.8
BcaC06g30835 Brassica carinata HOM05D004039 ORTHO05D004573 7.7e-31 137.9 155 52.3
BraA06t26860Z Brassica rapa HOM05D004039 ORTHO05D004573 1.0e-30 137.5 172 50.0
Lalb_Chr14g0364131 Lupinus albus HOM05D004039 ORTHO05D004573 1.3e-30 137.1 211 43.6
Oeu010264.1 Olea europaea HOM05D004039 ORTHO05D004573 1.7e-30 136.7 195 45.1
VMungo1302G0001 Vigna mungo HOM05D004039 ORTHO05D004573 1.7e-30 136.7 209 45.5
Dinv06937 Davidia involucrata HOM05D004039 ORTHO05D004573 3.8e-30 135.6 160 54.4
Manes.11G073200 Manihot esculenta HOM05D004039 ORTHO05D004573 3.8e-30 135.6 223 42.2
A06p39450 Brassica napus HOM05D004039 ORTHO05D004573 5.0e-30 135.2 154 51.9
Phvul.001G098500 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 6.5e-30 134.8 210 43.3
Ah.16g104320 Amaranthus hybridus HOM05D004039 ORTHO05D004573 8.6e-30 134.4 218 45.4
Cpa.g.sc70.36 Carica papaya HOM05D004039 ORTHO05D004573 1.1e-29 134.0 184 45.1
CAN.G1588.13 Capsicum annuum HOM05D004039 ORTHO05D004573 1.9e-29 133.3 208 44.7
Haze_14987 Corylus avellana HOM05D004039 ORTHO05D004573 1.9e-29 133.3 219 43.4
AUR62012365 Chenopodium quinoa HOM05D004039 ORTHO05D004573 2.5e-29 132.9 216 42.6
Gohir.A12G141800 Gossypium hirsutum HOM05D004039 ORTHO05D004573 3.2e-29 132.5 214 42.1
Gohir.D12G146700 Gossypium hirsutum HOM05D004039 ORTHO05D004573 4.2e-29 132.1 214 41.6
C07p38820 Brassica napus HOM05D004039 ORTHO05D004573 7.2e-29 131.3 154 50.6
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 7.2e-29 131.3 213 41.8
Lalb_Chr24g0402991 Lupinus albus HOM05D004039 ORTHO05D004573 9.5e-29 131.0 219 42.5
Sopen09g034240 Solanum pennellii HOM05D004039 ORTHO05D004573 9.5e-29 131.0 209 46.4
Gorai.008G157900 Gossypium raimondii HOM05D004039 ORTHO05D004573 1.2e-28 130.6 218 41.3
Cc02_g30640 Coffea canephora HOM05D004039 ORTHO05D004573 2.8e-28 129.4 214 43.5
ATR0582G327 Amborella trichopoda HOM05D004039 ORTHO05D004573 4.7e-28 128.6 181 45.9
Glyma.19G106500 Glycine max HOM05D004039 ORTHO05D004573 8.0e-28 127.9 218 42.2
PGSC0003DMG400011591 Solanum tuberosum HOM05D004039 ORTHO05D004573 8.0e-28 127.9 208 45.7
Lj1g0002386 Lotus japonicus HOM05D004039 ORTHO05D004573 1.8e-27 126.7 207 42.5
Sabra01G0049400 Salix brachista HOM05D004039 ORTHO05D004573 4.0e-27 125.6 197 47.7
Potri.014G140000 Populus trichocarpa HOM05D004039 ORTHO05D004573 6.8e-27 124.8 214 42.1
CsaV3_3G032870 Cucumis sativus L. HOM05D004039 ORTHO05D004573 1.2e-26 124.0 180 46.7
COL.COLO4_13404 Corchorus olitorius HOM05D004039 ORTHO05D004573 1.5e-26 123.6 198 42.4
Duzib187G1305 Durio zibethinus HOM05D004039 ORTHO05D004573 2.6e-26 122.9 222 38.7
Ciclev10016691m.g Citrus clementina HOM05D004039 ORTHO05D004573 3.4e-26 122.5 219 37.9
Psat3g089920 Pisum sativum HOM05D004039 ORTHO05D004573 9.8e-26 120.9 209 41.6
DCAR_031611 Daucus carota HOM05D004039 ORTHO05D004573 2.2e-25 119.8 188 43.1
Solyc09g091270.3 Solanum lycopersicum HOM05D004039 ORTHO05D004573 2.2e-25 119.8 169 49.7
PSO017G5432 Papaver somniferum HOM05D004039 ORTHO05D004573 2.8e-25 119.4 189 42.9
Nitab4.5_0019080g0010 Nicotiana tabacum HOM05D004039 ORTHO05D004573 3.7e-25 119.0 192 45.8
Migut.K01132 Erythranthe guttata HOM05D004039 ORTHO05D004573 4.9e-25 118.6 210 42.4
Eucgr.I01568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 4.9e-25 118.6 184 45.7
Glyma.16G045200 Glycine max HOM05D004039 ORTHO05D004573 6.3e-25 118.2 218 41.3
PGR042G1501 Punica granatum HOM05D004039 ORTHO05D004573 6.3e-25 118.2 228 36.4
Cfa007136 Carpinus fangiana HOM05D004039 ORTHO05D004573 8.3e-25 117.9 213 41.3
CDE05G3127 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 1.1e-24 117.5 201 42.3
PSO478G3045 Papaver somniferum HOM05D004039 ORTHO05D004573 1.1e-24 117.5 190 42.6
Medtr7g084740 Medicago truncatula HOM05D004039 ORTHO05D004573 1.8e-24 116.7 226 38.9
Eucgr.G01911 Eucalyptus grandis HOM05D004039 ORTHO05D004573 3.1e-24 115.9 203 36.9
Ca_08235_v3 Cicer arietinum L. HOM05D004039 ORTHO05D004573 7.0e-24 114.8 216 39.8
TPR.G31659 Trifolium pratense HOM05D004039 ORTHO05D004573 2.0e-23 113.2 217 40.6
GSVIVG01001118001 Vitis vinifera HOM05D004039 ORTHO05D011171 2.0e-23 113.2 108 61.1
Atru.chr6.2731 Acer truncatum HOM05D004039 ORTHO05D004573 2.7e-23 112.8 224 37.5
Rhsim12G0091100 Rhododendron simsii HOM05D004039 ORTHO05D004573 3.5e-23 112.5 188 42.0
Psat3g090520 Pisum sativum HOM05D004039 ORTHO05D004573 5.9e-23 111.7 216 39.8
Nn3g16207 Nelumbo nucifera HOM05D004039 ORTHO05D004573 7.8e-23 111.3 199 40.2
Manes.04G096800 Manihot esculenta HOM05D004039 ORTHO05D004573 1.3e-22 110.5 207 36.7
Medtr7g084720 Medicago truncatula HOM05D004039 ORTHO05D004573 1.9e-21 106.7 197 39.6
MD17G1003900 Malus domestica HOM05D004039 ORTHO05D004573 3.3e-21 105.9 235 34.5
AT5G13880 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 4.3e-21 105.5 190 41.1
Psat3g090560 Pisum sativum HOM05D004039 ORTHO05D004573 1.2e-20 104.0 247 34.8
SHI11395 Sapria himalayana HOM05D004039 ORTHO05D004573 1.2e-20 104.0 205 38.0
Peaxi162Scf00047g00153 Petunia axillaris HOM05D004039 ORTHO05D004573 4.7e-20 102.1 175 45.1
BcaC04g24246 Brassica carinata HOM05D004039 ORTHO05D004573 8.0e-20 101.3 186 40.3
MBI07_g42011_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 1.8e-19 100.1 219 36.1
Medtr7g084710 Medicago truncatula HOM05D004039 ORTHO05D004573 1.8e-19 100.1 215 35.8
A10p24480 Brassica napus HOM05D004039 ORTHO05D004573 3.0e-19 99.4 193 38.9
ECA248G3450 Erigeron canadensis HOM05D000009 ORTHO05D000008 4.0e-19 99.0 124 49.2
AL6G24520 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 8.9e-19 97.8 195 36.9
BcaC04g19071 Brassica carinata HOM05D004039 ORTHO05D004573 9.8e-18 94.4 190 38.4
C09p63220 Brassica napus HOM05D004039 ORTHO05D004573 9.8e-18 94.4 190 38.4
BolC9t59158H Brassica oleracea HOM05D004039 ORTHO05D004573 9.8e-18 94.4 190 38.4
Sp6g30120 Schrenkiella parvula HOM05D004039 ORTHO05D004573 9.8e-18 94.4 188 38.3
BraA10t44513Z Brassica rapa HOM05D004039 ORTHO05D004573 1.3e-17 94.0 187 38.0
Carub.0006s1207 Capsella rubella HOM05D004039 ORTHO05D004573 1.7e-17 93.6 190 37.4
Glyma.02G068200 Glycine max HOM05D004039 ORTHO05D004573 1.7e-17 93.6 253 30.4
Zm00001eb085640 Zea mays HOM05D004039 ORTHO05D004573 2.9e-17 92.8 216 36.6
SGA_v2.0_scaffold258G45761 Striga asiatica HOM05D004039 ORTHO05D004573 3.7e-17 92.4 184 40.2
Nitab4.5_0002182g0030 Nicotiana tabacum HOM05D004039 ORTHO05D004573 4.9e-17 92.0 94 56.4
Phvul.004G067800 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 8.3e-17 91.3 204 32.4
Thhalv10014767m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 1.4e-16 90.5 193 35.8
C03p07240 Brassica napus HOM05D004039 ORTHO05D004573 4.1e-16 89.0 164 37.8
BolC3t13225H Brassica oleracea HOM05D004039 ORTHO05D004573 4.1e-16 89.0 164 37.8
CARHR199550 Cardamine hirsuta HOM05D004039 ORTHO05D004573 4.1e-16 89.0 159 40.3
TWI12G1264 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 5.4e-16 88.6 200 40.0
Os04g0382400 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 7.0e-16 88.2 205 34.1
CDE02G1703 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 2.0e-15 86.7 184 34.2
CDE06G1383 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 3.5e-15 85.9 185 35.1
A03p06250 Brassica napus HOM05D004039 ORTHO05D004573 1.7e-14 83.6 160 36.2
BraA03t09957Z Brassica rapa HOM05D004039 ORTHO05D004573 1.7e-14 83.6 160 36.2
BcaB01g05331 Brassica carinata HOM05D004039 ORTHO05D004573 6.6e-14 81.6 163 35.6
FAN12G1550 Fragaria x ananassa HOM05D004039 ORTHO05D004573 1.1e-13 80.9 112 49.1
Lalb_Chr21g0317001 Lupinus albus HOM05D004039 ORTHO05D004573 1.1e-13 80.9 208 31.2
Prupe.3G315300 Prunus persica HOM05D004039 ORTHO05D004573 1.1e-13 80.9 233 32.2
CiPaw.14G093600 Carya illinoinensis HOM05D004039 ORTHO05D004573 1.9e-13 80.1 192 34.4
TPR.G31663 Trifolium pratense HOM05D004039 ORTHO05D004573 1.9e-13 80.1 157 36.9
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 2.5e-13 79.7 177 37.9
Rhsim08G0037500 Rhododendron simsii HOM05D004039 ORTHO05D000739 1.2e-12 77.4 183 36.6
PGR119G1683 Punica granatum HOM05D004039 ORTHO05D004573 2.8e-12 76.3 201 34.3
CsaV3_3G020070 Cucumis sativus L. HOM05D004039 ORTHO05D004573 3.6e-12 75.9 153 37.9
Aqoxy3G01771 Aquilegia oxysepala HOM05D004039 ORTHO05D004573 6.2e-12 75.1 74 56.8
MELO3C014757.2 Cucumis melo HOM05D004039 ORTHO05D004573 1.8e-11 73.6 180 36.1
Zm00001eb181000 Zea mays HOM05D004039 ORTHO05D004573 2.3e-11 73.2 195 31.8
SEGI_35194 Sequoiadendron giganteum HOM05D004039 ORTHO05D004573 3.1e-11 72.8 180 36.1
ClCG05G012460 Citrullus lanatus HOM05D004039 ORTHO05D004573 6.4e-09 65.1 150 35.3
Oeu035281.1 Olea europaea HOM05D004039 ORTHO05D004573 8.3e-09 64.7 152 32.9
Os02g0505500 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 4.1e-08 62.4 44 70.5
Os08g0539200 Oryza sativa ssp. japonica HOM05D015480 ORTHO05D019326 7.0e-08 61.6 151 27.8
Sed0011010 Sechium edule HOM05D004039 ORTHO05D004573 1.2e-07 60.8 156 32.1
Oeu062519.1 Olea europaea HOM05D051843 ORTHO05D004573 4.6e-07 58.9 155 31.6
THA.LOC104823341 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 1.3e-06 57.4 175 31.4
CDE07G0150 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 6.6e-06 55.1 118 34.7


User provided reference genes

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