Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_07088 Corchorus olitorius HOM05D002337 ORTHO05D002412 6.7e-41 170.2 86 100.0
Thecc.05G047800 Theobroma cacao HOM05D002337 ORTHO05D002412 2.9e-20 101.7 71 77.5
Duzib106G0681 Durio zibethinus HOM05D002337 ORTHO05D002412 9.4e-19 96.7 71 74.6
Duzib093G0383 Durio zibethinus HOM05D002337 ORTHO05D002412 1.4e-17 92.8 71 74.6
Potri.006G214700 Populus trichocarpa HOM05D002337 ORTHO05D002412 2.6e-16 88.6 71 69.0
Duzib128G1181 Durio zibethinus HOM05D002337 ORTHO05D002412 1.7e-15 85.9 68 70.6
TAR369G0281 Trochodendron aralioides HOM05D002337 ORTHO05D002412 3.7e-15 84.7 68 66.2
Gohir.A04G078300 Gossypium hirsutum HOM05D002337 ORTHO05D002412 4.8e-15 84.3 71 69.0
Gohir.D04G117500 Gossypium hirsutum HOM05D002337 ORTHO05D002412 4.8e-15 84.3 71 69.0
Gorai.009G422500 Gossypium raimondii HOM05D002337 ORTHO05D002412 4.8e-15 84.3 71 69.0
TAR633G1343 Trochodendron aralioides HOM05D002337 ORTHO05D002412 3.1e-14 81.6 66 68.2
Ciclev10011960m.g Citrus clementina HOM05D002337 ORTHO05D002412 2.0e-13 79.0 73 64.4
TAR636G1284 Trochodendron aralioides HOM05D002337 ORTHO05D002412 2.7e-13 78.6 68 63.2
Manes.08G072701 Manihot esculenta HOM05D002337 ORTHO05D002412 4.5e-13 77.8 74 63.5
Manes.08G072800 Manihot esculenta HOM05D002337 ORTHO05D002412 4.5e-13 77.8 74 63.5
Rhsim05G0185600 Rhododendron simsii HOM05D002337 ORTHO05D002412 2.3e-12 75.5 62 62.9
Dinv31396 Davidia involucrata HOM05D002337 ORTHO05D002412 2.9e-12 75.1 83 54.2
Actinidia19740 Actinidia chinensis HOM05D002337 ORTHO05D002412 5.0e-12 74.3 61 62.3
Nn2g10536 Nelumbo nucifera HOM05D002337 ORTHO05D002412 5.0e-12 74.3 65 64.6
QL08p057719 Quercus lobata HOM05D002337 ORTHO05D002412 5.0e-12 74.3 66 63.6
GSVIVG01032616001 Vitis vinifera HOM05D002337 ORTHO05D002412 5.0e-12 74.3 66 63.6
MD07G1186600 Malus domestica HOM05D002337 ORTHO05D002412 6.6e-12 73.9 66 63.6
Potri.016G080800 Populus trichocarpa HOM05D002337 ORTHO05D002412 1.1e-11 73.2 62 62.9
Glyma.10G292000 Glycine max HOM05D002337 ORTHO05D002412 1.5e-11 72.8 60 65.0
Atru.chr8.2496 Acer truncatum HOM05D002337 ORTHO05D002412 2.5e-11 72.0 77 59.7
Aqoxy4G03075 Aquilegia oxysepala HOM05D002337 ORTHO05D002412 2.5e-11 72.0 63 63.5
PGR044G1716 Punica granatum HOM05D002337 ORTHO05D002412 3.3e-11 71.6 70 54.3
Haze_20705 Corylus avellana HOM05D002337 ORTHO05D002412 4.2e-11 71.2 69 62.3
Prupe.2G225400 Prunus persica HOM05D002337 ORTHO05D002412 4.2e-11 71.2 66 60.6
Glyma.20G241300 Glycine max HOM05D002337 ORTHO05D002412 7.2e-11 70.5 60 63.3
Gohir.D09G155300 Gossypium hirsutum HOM05D002337 ORTHO05D002412 7.2e-11 70.5 71 57.7
Gorai.006G176700 Gossypium raimondii HOM05D002337 ORTHO05D002412 7.2e-11 70.5 71 57.7
PGSC0003DMG400023413 Solanum tuberosum HOM05D002337 ORTHO05D002412 7.2e-11 70.5 69 55.1
Phvul.007G008800 Phaseolus vulgaris HOM05D002337 ORTHO05D002412 9.5e-11 70.1 60 63.3
Duzib114G0327 Durio zibethinus HOM05D002337 ORTHO05D002412 1.6e-10 69.3 68 58.8
Nitab4.5_0006800g0030 Nicotiana tabacum HOM05D002337 ORTHO05D002412 1.6e-10 69.3 68 57.4
Thecc.10G060300 Theobroma cacao HOM05D002337 ORTHO05D002412 1.6e-10 69.3 65 61.5
CiPaw.09G186500 Carya illinoinensis HOM05D002337 ORTHO05D002412 2.1e-10 68.9 73 57.5
TAR623G1231 Trochodendron aralioides HOM05D002337 ORTHO05D002412 2.1e-10 68.9 70 55.7
ClCG04G008580 Citrullus lanatus HOM05D002337 ORTHO05D002412 2.8e-10 68.6 82 52.4
Nitab4.5_0000643g0110 Nicotiana tabacum HOM05D002337 ORTHO05D002412 2.8e-10 68.6 77 51.9
Solyc05g054850.1 Solanum lycopersicum HOM05D002337 ORTHO05D002412 2.8e-10 68.6 69 52.2
Sopen05g033320 Solanum pennellii HOM05D002337 ORTHO05D002412 2.8e-10 68.6 69 52.2
Manes.07G107400 Manihot esculenta HOM05D002337 ORTHO05D002412 3.6e-10 68.2 68 55.9
Peaxi162Scf00039g00045 Petunia axillaris HOM05D002337 ORTHO05D002412 3.6e-10 68.2 63 60.3
CAN.G1602.6 Capsicum annuum HOM05D002337 ORTHO05D002412 4.7e-10 67.8 69 52.2
Dinv25946 Davidia involucrata HOM05D002337 ORTHO05D002412 4.7e-10 67.8 68 58.8
Gohir.A09G159700 Gossypium hirsutum HOM05D002337 ORTHO05D002412 4.7e-10 67.8 71 56.3
Lalb_Chr02g0153321 Lupinus albus HOM05D002337 ORTHO05D002412 8.0e-10 67.0 64 53.1
HPP92_015531 Vanilla planifolia HOM05D002337 ORTHO05D002412 8.0e-10 67.0 66 53.0
CiPaw.01G280500 Carya illinoinensis HOM05D002337 ORTHO05D002412 1.0e-09 66.6 66 59.1
ClCG02G013620 Citrullus lanatus HOM05D002337 ORTHO05D002412 1.0e-09 66.6 81 54.3
Sed0022304 Sechium edule HOM05D002337 ORTHO05D002412 1.8e-09 65.9 81 50.6
CsaV3_4G024580 Cucumis sativus L. HOM05D002337 ORTHO05D002412 2.3e-09 65.5 82 48.8
MBI14_g35937_MAGBIO Magnolia biondii HOM05D002337 ORTHO05D002412 2.3e-09 65.5 65 55.4
Prupe.6G246800 Prunus persica HOM05D002337 ORTHO05D002412 2.3e-09 65.5 60 63.3
Sabra16G0089000 Salix brachista HOM05D002337 ORTHO05D002412 2.3e-09 65.5 66 53.0
VMungo0720G2225 Vigna mungo HOM05D002337 ORTHO05D002412 3.0e-09 65.1 61 62.3
COL.COLO4_10886 Corchorus olitorius HOM05D002337 ORTHO05D002412 4.0e-09 64.7 63 55.6
Haze_16978 Corylus avellana HOM05D002337 ORTHO05D002412 4.0e-09 64.7 66 57.6
Eucgr.J01155 Eucalyptus grandis HOM05D002337 ORTHO05D002412 6.8e-09 63.9 62 54.8
Lalb_Chr21g0314491 Lupinus albus HOM05D002337 ORTHO05D002412 8.9e-09 63.5 71 47.9
Potri.008G048300 Populus trichocarpa HOM05D002337 ORTHO05D002412 8.9e-09 63.5 65 58.5
Potri.010G212800 Populus trichocarpa HOM05D002337 ORTHO05D002412 8.9e-09 63.5 65 56.9
TPR.G31957 Trifolium pratense HOM05D002337 ORTHO05D002412 8.9e-09 63.5 62 50.0
ATR0759G120 Amborella trichopoda HOM05D002337 ORTHO05D002412 1.5e-08 62.8 63 54.0
Manes.09G088200 Manihot esculenta HOM05D002337 ORTHO05D002412 1.5e-08 62.8 72 54.2
PSO384G2060 Papaver somniferum HOM05D002337 ORTHO05D002412 1.5e-08 62.8 74 51.4
CSS0031665 Camellia sinensis var. sinensis HOM05D002337 ORTHO05D002412 2.0e-08 62.4 67 58.2
Nitab4.5_0000914g0140 Nicotiana tabacum HOM05D002337 ORTHO05D002412 2.0e-08 62.4 59 55.9
Sp4g21680 Schrenkiella parvula HOM05D002337 ORTHO05D002412 2.0e-08 62.4 60 55.0
MELO3C023814.2 Cucumis melo HOM05D002337 ORTHO05D002412 2.6e-08 62.0 75 53.3
Dinv35665 Davidia involucrata HOM05D002337 ORTHO05D002412 2.6e-08 62.0 63 52.4
Solyc09g005880.1 Solanum lycopersicum HOM05D002337 ORTHO05D002412 2.6e-08 62.0 63 50.8
CSS0036050 Camellia sinensis var. sinensis HOM05D002337 ORTHO05D002412 3.4e-08 61.6 84 50.0
CARHR134220 Cardamine hirsuta HOM05D002337 ORTHO05D002412 3.4e-08 61.6 61 52.5
Thhalv10016955m.g Eutrema salsugineum HOM05D002337 ORTHO05D002412 3.4e-08 61.6 61 55.7
Oeu058315.1 Olea europaea HOM05D002337 ORTHO05D002412 3.4e-08 61.6 66 50.0
BolC4t28222H Brassica oleracea HOM05D002337 ORTHO05D002412 4.4e-08 61.2 77 46.8
Lj1P930T24 Lonicera japonica HOM05D002337 ORTHO05D002412 4.4e-08 61.2 67 59.7
Sabra06G0165700 Salix brachista HOM05D002337 ORTHO05D002412 4.4e-08 61.2 71 52.1
Sabra10G0164700 Salix brachista HOM05D002337 ORTHO05D002412 4.4e-08 61.2 65 55.4
CsaV3_5G006570 Cucumis sativus L. HOM05D002337 ORTHO05D002412 5.7e-08 60.8 75 52.0
DCAR_017753 Daucus carota HOM05D002337 ORTHO05D002412 5.7e-08 60.8 49 67.3
PSO339G3544 Papaver somniferum HOM05D002337 ORTHO05D002412 5.7e-08 60.8 74 50.0
Phvul.007G160200 Phaseolus vulgaris HOM05D002337 ORTHO05D002412 5.7e-08 60.8 62 51.6
Aqoxy2G01952 Aquilegia oxysepala HOM05D002337 ORTHO05D002412 7.5e-08 60.5 69 52.2
BcaB06g29080 Brassica carinata HOM05D002337 ORTHO05D002412 7.5e-08 60.5 60 55.0
Cc02_g08550 Coffea canephora HOM05D002337 ORTHO05D002412 7.5e-08 60.5 66 48.5
BcaC02g12053 Brassica carinata HOM05D002337 ORTHO05D002412 9.8e-08 60.1 61 50.8
C04p08430 Brassica napus HOM05D002337 ORTHO05D002412 9.8e-08 60.1 61 50.8
BolC4t22441H Brassica oleracea HOM05D002337 ORTHO05D002412 9.8e-08 60.1 61 50.8
Nitab4.5_0011080g0010 Nicotiana tabacum HOM05D002337 ORTHO05D002412 9.8e-08 60.1 55 60.0
Atru.chr12.580 Acer truncatum HOM05D002337 ORTHO05D002412 1.3e-07 59.7 61 59.0
BcaB02g09129 Brassica carinata HOM05D002337 ORTHO05D002412 1.3e-07 59.7 60 50.0
Ca_09591_v3 Cicer arietinum L. HOM05D002337 ORTHO05D002412 1.3e-07 59.7 63 49.2
Lj5g0026996 Lotus japonicus HOM05D002337 ORTHO05D002412 1.3e-07 59.7 58 58.6
PGSC0003DMG400023932 Solanum tuberosum HOM05D002337 ORTHO05D002412 1.3e-07 59.7 63 50.8
AL4G36720 Arabidopsis lyrata HOM05D002337 ORTHO05D002412 1.7e-07 59.3 77 44.2
AT2G39370 Arabidopsis thaliana HOM05D002337 ORTHO05D002412 1.7e-07 59.3 61 52.5
CAN.G350.12 Capsicum annuum HOM05D002337 ORTHO05D002412 1.7e-07 59.3 64 53.1
Sed0025936 Sechium edule HOM05D002337 ORTHO05D002412 1.7e-07 59.3 69 52.2
BcaC02g07410 Brassica carinata HOM05D002337 ORTHO05D002412 2.2e-07 58.9 77 45.5
C04p67270 Brassica napus HOM05D002337 ORTHO05D002412 2.2e-07 58.9 77 45.5
Sed0004800 Sechium edule HOM05D002337 ORTHO05D002412 2.2e-07 58.9 66 48.5
TWI38G1175 Tripterygium wilfordii HOM05D002337 ORTHO05D002412 2.2e-07 58.9 65 53.8
VMungo0720G1220 Vigna mungo HOM05D002337 ORTHO05D002412 2.2e-07 58.9 62 48.4
A05p07030 Brassica napus HOM05D002337 ORTHO05D002412 2.8e-07 58.5 74 41.9
TWI63G1591 Tripterygium wilfordii HOM05D002337 ORTHO05D002412 2.8e-07 58.5 57 57.9
RcHm_v2.0_Chr1g0365131 Rosa chinensis HOM05D002337 ORTHO05D002412 4.9e-07 57.8 64 56.2
DCAR_014946 Daucus carota HOM05D002337 ORTHO05D002412 6.3e-07 57.4 54 59.3
Oeu050644.1 Olea europaea HOM05D002337 ORTHO05D002412 6.3e-07 57.4 66 50.0
Rhsim03G0125800 Rhododendron simsii HOM05D002337 ORTHO05D002412 6.3e-07 57.4 66 54.5
RhsimUnG0167900 Rhododendron simsii HOM05D002337 ORTHO05D002412 6.3e-07 57.4 66 54.5
BraA04t18454Z Brassica rapa HOM05D002337 ORTHO05D002412 8.3e-07 57.0 60 50.0
BraA05t19669Z Brassica rapa HOM05D002337 ORTHO05D002412 8.3e-07 57.0 74 41.9
FvH4_7g20880 Fragaria vesca HOM05D002337 ORTHO05D002412 8.3e-07 57.0 75 49.3
FAN01G2855 Fragaria x ananassa HOM05D002337 ORTHO05D002412 8.3e-07 57.0 75 49.3
FAN03G0281 Fragaria x ananassa HOM05D002337 ORTHO05D002412 8.3e-07 57.0 75 49.3
FAN06G1636 Fragaria x ananassa HOM05D002337 ORTHO05D002412 8.3e-07 57.0 75 49.3
FAN06G1669 Fragaria x ananassa HOM05D002337 ORTHO05D002412 8.3e-07 57.0 75 49.3
FAN10G2584 Fragaria x ananassa HOM05D002337 ORTHO05D002412 8.3e-07 57.0 75 49.3
Medtr1g067410 Medicago truncatula HOM05D002337 ORTHO05D002412 8.3e-07 57.0 60 48.3
A04p30530 Brassica napus HOM05D002337 ORTHO05D002412 1.1e-06 56.6 77 42.9
Cpa.g.sc114.13 Carica papaya HOM05D002337 ORTHO05D002412 1.4e-06 56.2 34 73.5
Carub.0004s2142 Capsella rubella HOM05D002337 ORTHO05D002412 1.8e-06 55.8 60 46.7
HPP92_017949 Vanilla planifolia HOM05D002337 ORTHO05D002412 1.8e-06 55.8 65 43.1
Gohir.A10G210000 Gossypium hirsutum HOM05D002337 ORTHO05D002412 2.4e-06 55.5 61 52.5
Gorai.011G245000 Gossypium raimondii HOM05D002337 ORTHO05D002412 2.4e-06 55.5 61 52.5
Psat6g069600 Pisum sativum HOM05D002337 ORTHO05D002412 2.4e-06 55.5 65 46.2
RcHm_v2.0_Chr7g0221341 Rosa chinensis HOM05D002337 ORTHO05D002412 2.4e-06 55.5 49 63.3
AUR62035982 Chenopodium quinoa HOM05D002337 ORTHO05D002412 4.1e-06 54.7 63 50.8
AUR62041630 Chenopodium quinoa HOM05D002337 ORTHO05D002412 4.1e-06 54.7 63 50.8
MD04G1117200 Malus domestica HOM05D002337 ORTHO05D002412 4.1e-06 54.7 34 73.5
Peaxi162Scf00015g00254 Petunia axillaris HOM05D002337 ORTHO05D002412 4.1e-06 54.7 53 56.6
QL07p046196 Quercus lobata HOM05D002337 ORTHO05D002412 4.1e-06 54.7 47 63.8
Gohir.D10G218300 Gossypium hirsutum HOM05D002337 ORTHO05D002412 5.4e-06 54.3 61 50.8
Cc06_g03190 Coffea canephora HOM05D002337 ORTHO05D002412 7.0e-06 53.9 69 50.7
Zm00001eb148680 Zea mays HOM05D002337 ORTHO05D002412 7.0e-06 53.9 65 43.1
Gohir.A05G352200 Gossypium hirsutum HOM05D002337 ORTHO05D002412 9.2e-06 53.5 53 52.8
Gohir.D04G060700 Gossypium hirsutum HOM05D002337 ORTHO05D002412 9.2e-06 53.5 53 52.8
Gorai.012G067600 Gossypium raimondii HOM05D002337 ORTHO05D002412 9.2e-06 53.5 53 52.8


User provided reference genes

Program Settings