Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_06857 Corchorus olitorius HOM05D004985 ORTHO05D005912 3.2e-167 591.7 296 100.0
Duzib205G0214 Durio zibethinus HOM05D004985 ORTHO05D005912 4.4e-148 528.1 296 88.9
Thecc.03G101800 Theobroma cacao HOM05D004985 ORTHO05D005912 2.2e-147 525.8 296 87.8
Gohir.A07G068600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 5.9e-145 517.7 297 86.2
Gohir.D07G073100 Gossypium hirsutum HOM05D004985 ORTHO05D005912 1.0e-144 516.9 297 85.9
Gorai.001G077300 Gossypium raimondii HOM05D004985 ORTHO05D005912 2.2e-144 515.8 297 85.5
Manes.14G085700 Manihot esculenta HOM05D004985 ORTHO05D005912 4.4e-132 474.9 296 79.7
Ciclev10021430m.g Citrus clementina HOM05D004985 ORTHO05D005912 2.4e-130 469.2 296 79.1
GSVIVG01007867001 Vitis vinifera HOM05D004985 ORTHO05D005912 4.1e-130 468.4 297 80.5
Atru.chr9.579 Acer truncatum HOM05D004985 ORTHO05D005912 1.2e-129 466.8 296 79.1
Potri.012G066200 Populus trichocarpa HOM05D004985 ORTHO05D005912 7.7e-129 464.2 296 78.0
Cpa.g.sc94.56 Carica papaya HOM05D004985 ORTHO05D005912 1.9e-127 459.5 296 77.7
CSS0016421 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 9.5e-127 457.2 296 75.3
CSS0040501 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 9.5e-127 457.2 296 75.3
Actinidia04825 Actinidia chinensis HOM05D004985 ORTHO05D004228 1.6e-126 456.4 298 75.2
QL10p019503 Quercus lobata HOM05D004985 ORTHO05D005912 1.6e-126 456.4 295 77.3
TAR374G0278 Trochodendron aralioides HOM05D004985 ORTHO05D005912 2.3e-125 452.6 296 75.3
Hma1.2p1_0060F.1_g033100 Hydrangea macrophylla HOM05D004985 ORTHO05D005912 6.8e-125 451.1 296 74.7
Cc09_g09310 Coffea canephora HOM05D004985 ORTHO05D005912 3.4e-124 448.7 296 75.0
TWI31G1299 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 4.4e-124 448.4 296 75.0
PGR044G1445 Punica granatum HOM05D004985 ORTHO05D005912 5.7e-124 448.0 296 73.6
Eucgr.K02531 Eucalyptus grandis HOM05D004985 ORTHO05D005912 1.3e-123 446.8 296 75.7
Prupe.5G205100 Prunus persica HOM05D004985 ORTHO05D005912 1.3e-123 446.8 299 74.6
vmacro17610 Vaccinium macrocarpon HOM05D004985 ORTHO05D005912 2.2e-123 446.0 297 73.7
CiPaw.11G053300 Carya illinoinensis HOM05D004985 ORTHO05D005912 3.7e-123 445.3 296 75.3
Oeu014411.1 Olea europaea HOM05D004985 ORTHO05D005912 6.4e-123 444.5 299 74.9
Sabra12G0048600 Salix brachista HOM05D004985 ORTHO05D005912 6.4e-123 444.5 320 70.9
Dinv22782 Davidia involucrata HOM05D004985 ORTHO05D005912 1.8e-122 443.0 284 77.5
THA.LOC104812106 Tarenaya hassleriana HOM05D004985 ORTHO05D005912 1.2e-121 440.3 296 74.7
AL1G31080 Arabidopsis lyrata HOM05D004985 ORTHO05D005912 1.3e-120 436.8 297 73.4
AT1G18640 Arabidopsis thaliana HOM05D004985 ORTHO05D005912 5.0e-120 434.9 296 73.0
Duzib084G0347 Durio zibethinus HOM05D004985 ORTHO05D005912 1.9e-119 433.0 296 74.7
CsaV3_1G002920 Cucumis sativus L. HOM05D004985 ORTHO05D005912 3.3e-119 432.2 296 72.0
Sed0020095 Sechium edule HOM05D004985 ORTHO05D005912 4.3e-119 431.8 296 72.0
Manes.06G084800 Manihot esculenta HOM05D004985 ORTHO05D005912 3.6e-118 428.7 252 83.3
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 4.7e-118 428.3 309 70.9
MSTRG.9599 Avicennia marina HOM05D004985 ORTHO05D005912 1.0e-117 427.2 299 72.9
Carub.0001s1827 Capsella rubella HOM05D004985 ORTHO05D005912 1.0e-117 427.2 296 72.0
Oeu042721.3 Olea europaea HOM05D004985 ORTHO05D005912 1.0e-117 427.2 280 75.0
arahy.Tifrunner.gnm1.ann1.B21894 Arachis hypogaea HOM05D004985 ORTHO05D005912 6.8e-117 424.5 300 71.3
ClCG06G015640 Citrullus lanatus HOM05D004985 ORTHO05D005912 6.8e-117 424.5 311 68.8
arahy.Tifrunner.gnm1.ann1.XT1KNI Arachis hypogaea HOM05D004985 ORTHO05D005912 3.4e-116 422.2 300 70.7
CARHR019270 Cardamine hirsuta HOM05D004985 ORTHO05D005912 3.4e-116 422.2 296 72.0
Thhalv10008334m.g Eutrema salsugineum HOM05D004985 ORTHO05D005912 3.4e-116 422.2 296 70.6
Sp1g16610 Schrenkiella parvula HOM05D004985 ORTHO05D005912 4.4e-116 421.8 297 71.0
Carub.0007s3048 Capsella rubella HOM05D004985 ORTHO05D005912 1.3e-115 420.2 296 70.3
PSO478G5014 Papaver somniferum HOM05D004985 ORTHO05D005912 1.7e-115 419.9 299 70.9
Hund02586 Selenicereus undatus HOM05D004985 ORTHO05D005912 1.7e-115 419.9 297 71.0
PGSC0003DMG400030337 Solanum tuberosum HOM05D004985 ORTHO05D005912 2.2e-115 419.5 295 70.8
Glyma.04G162700 Glycine max HOM05D004985 ORTHO05D005912 3.7e-115 418.7 296 72.0
MBI19_g00634_MAGBIO Magnolia biondii HOM05D004985 ORTHO05D005912 4.9e-115 418.3 296 70.9
RcHm_v2.0_Chr7g0183091 Rosa chinensis HOM05D004985 ORTHO05D005912 4.9e-115 418.3 298 71.1
Peaxi162Scf00481g00631 Petunia axillaris HOM05D004985 ORTHO05D005912 6.4e-115 417.9 297 71.0
AUR62021560 Chenopodium quinoa HOM05D004985 ORTHO05D005912 8.3e-115 417.5 298 70.8
PSO017G5703 Papaver somniferum HOM05D004985 ORTHO05D005912 1.1e-114 417.2 299 69.9
Solyc06g076510.3 Solanum lycopersicum HOM05D004985 ORTHO05D005912 1.1e-114 417.2 295 70.8
Aa31LG7G3400 Aethionema arabicum HOM05D004985 ORTHO05D005912 1.4e-114 416.8 332 66.6
A08p30280 Brassica napus HOM05D004985 ORTHO05D005912 1.9e-114 416.4 294 70.1
Ca_14341_v3 Cicer arietinum L. HOM05D004985 ORTHO05D005912 4.1e-114 415.2 296 70.9
Sopen06g032910 Solanum pennellii HOM05D004985 ORTHO05D005912 4.1e-114 415.2 295 70.2
A06p14760 Brassica napus HOM05D004985 ORTHO05D005912 5.4e-114 414.8 298 69.8
MELO3C017224.2 Cucumis melo HOM05D004985 ORTHO05D005912 5.4e-114 414.8 331 65.3
Migut.D01657 Erythranthe guttata HOM05D004985 ORTHO05D005912 5.4e-114 414.8 299 69.9
BcaB07g31884 Brassica carinata HOM05D004985 ORTHO05D005912 1.2e-113 413.7 298 70.1
FAN13G1687 Fragaria x ananassa HOM05D004985 ORTHO05D005912 1.2e-113 413.7 299 70.2
SalBow4G0956 Salvia bowleyana HOM05D004985 ORTHO05D005912 1.2e-113 413.7 299 69.6
BraA06t24599Z Brassica rapa HOM05D004985 ORTHO05D005912 2.0e-113 412.9 298 69.5
ECA232G4926 Erigeron canadensis HOM05D004985 ORTHO05D005912 2.0e-113 412.9 296 70.6
FvH4_5g13840 Fragaria vesca HOM05D004985 ORTHO05D005912 2.0e-113 412.9 299 70.6
TPR.G12221 Trifolium pratense HOM05D004985 ORTHO05D005912 2.7e-113 412.5 295 70.2
Lsat_1_v5_gn_2_122560 Lactuca sativa HOM05D004985 ORTHO05D005912 4.6e-113 411.8 296 70.9
BcaC05g25759 Brassica carinata HOM05D004985 ORTHO05D005912 7.8e-113 411.0 298 70.1
C05p16910 Brassica napus HOM05D004985 ORTHO05D005912 7.8e-113 411.0 298 70.1
BolC5t30393H Brassica oleracea HOM05D004985 ORTHO05D005912 7.8e-113 411.0 298 70.1
CAN.G394.86 Capsicum annuum HOM05D004985 ORTHO05D005912 1.0e-112 410.6 297 70.4
Glyma.06G203300 Glycine max HOM05D004985 ORTHO05D005912 1.3e-112 410.2 298 71.1
Lj1g0020192 Lotus japonicus HOM05D004985 ORTHO05D005912 3.0e-112 409.1 295 70.2
CANSAT35G1156 Cannabis sativa HOM05D004985 ORTHO05D005912 3.9e-112 408.7 300 71.3
DCAR_029981 Daucus carota HOM05D004985 ORTHO05D005912 3.9e-112 408.7 245 81.2
MSTRG.15338 Avicennia marina HOM05D004985 ORTHO05D005912 1.1e-111 407.1 303 69.6
AUR62008533 Chenopodium quinoa HOM05D004985 ORTHO05D005912 1.1e-111 407.1 297 69.4
TWI79G1560 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 1.5e-111 406.8 232 83.2
Medtr3g025840 Medicago truncatula HOM05D004985 ORTHO05D005912 2.5e-111 406.0 296 69.3
HanXRQChr09g0270221 Helianthus annuus HOM05D004985 ORTHO05D005912 3.3e-111 405.6 255 78.8
MD14G1211600 Malus domestica HOM05D004985 ORTHO05D005912 3.3e-111 405.6 255 79.2
Aqoxy3G03694 Aquilegia oxysepala HOM05D004985 ORTHO05D005912 4.3e-111 405.2 300 68.3
MD06G1202500 Malus domestica HOM05D004985 ORTHO05D005912 5.6e-111 404.8 255 79.2
SGA_v2.0_scaffold42G16037 Striga asiatica HOM05D004985 ORTHO05D005912 5.6e-111 404.8 299 68.6
Nitab4.5_0000116g0440 Nicotiana tabacum HOM05D004985 ORTHO05D005912 1.2e-110 403.7 295 68.8
Phvul.010G007300 Phaseolus vulgaris HOM05D004985 ORTHO05D005912 3.6e-110 402.1 299 68.6
Rhsim08G0146000 Rhododendron simsii HOM05D004985 ORTHO05D005912 4.7e-110 401.7 367 58.0
Psat5g208200 Pisum sativum HOM05D004985 ORTHO05D005912 8.1e-110 401.0 296 69.6
Sed0001113 Sechium edule HOM05D004985 ORTHO05D005912 3.1e-109 399.1 296 68.6
TPR.G28540 Trifolium pratense HOM05D004985 ORTHO05D005912 6.8e-109 397.9 297 68.4
Haze_18480 Corylus avellana HOM05D004985 ORTHO05D005912 2.0e-108 396.4 277 71.8
Lalb_Chr12g0197201 Lupinus albus HOM05D004985 ORTHO05D005912 5.8e-108 394.8 299 67.6
C08p18810 Brassica napus HOM05D004985 ORTHO05D005912 1.7e-107 393.3 347 60.8
Nitab4.5_0004739g0030 Nicotiana tabacum HOM05D004985 ORTHO05D005912 1.1e-106 390.6 283 69.6
VMungo0331G0044 Vigna mungo HOM05D004985 ORTHO05D005912 1.9e-106 389.8 298 67.8
BraA08t34961Z Brassica rapa HOM05D004985 ORTHO05D005912 7.8e-105 384.4 225 81.3
FAN08G1159 Fragaria x ananassa HOM05D004985 ORTHO05D005912 3.9e-104 382.1 299 67.9
FAN18G1860 Fragaria x ananassa HOM05D004985 ORTHO05D005912 5.1e-104 381.7 299 66.6
TAR622G1020 Trochodendron aralioides HOM05D004985 ORTHO05D005912 1.5e-103 380.2 300 66.0
Lj1g0027941 Lotus japonicus HOM05D004985 ORTHO05D005912 7.3e-103 377.9 295 66.8
EL10Ac8g18666 Beta vulgaris HOM05D004985 ORTHO05D005912 6.8e-101 371.3 221 81.4
Nn4g23424 Nelumbo nucifera HOM05D004985 ORTHO05D005912 1.2e-100 370.5 284 66.5
Os11g0629500 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 5.8e-100 368.2 243 72.8
Os12g0502400 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 9.9e-100 367.5 294 62.6
ATR0681G325 Amborella trichopoda HOM05D004985 ORTHO05D005912 1.6e-97 360.1 224 77.2
Nn3g17450 Nelumbo nucifera HOM05D004985 ORTHO05D005912 4.6e-97 358.6 256 71.1
BolC8t49507H Brassica oleracea HOM05D004985 ORTHO05D005912 6.0e-97 358.2 264 69.3
unitig_60.g25411 Utricularia gibba HOM05D004985 ORTHO05D005912 6.0e-97 358.2 222 76.1
BcaC07g38933 Brassica carinata HOM05D004985 ORTHO05D005912 7.8e-97 357.8 261 70.1
AUR62008530 Chenopodium quinoa HOM05D004985 ORTHO05D005912 2.3e-96 356.3 298 63.4
Zm00001eb166440 Zea mays HOM05D004985 ORTHO05D005912 2.2e-91 339.7 243 67.5
Cc11_g04830 Coffea canephora HOM05D004985 ORTHO05D005912 9.3e-90 334.3 261 68.6
AagrBONN_evm.TU.Sc2ySwM_228.2773 Anthoceros agrestis HOM05D004985 ORTHO05D005912 1.9e-87 326.6 239 67.4
Sc10g0009710 Simmondsia chinensis HOM05D004985 ORTHO05D005912 3.6e-86 322.4 204 79.4
CDE06G0240 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 8.1e-86 321.2 202 77.2
Pp3c8_16890 Physcomitrium patens HOM05D004985 ORTHO05D005912 2.4e-85 319.7 222 68.9
SMO137G0315 Selaginella moellendorffii HOM05D004985 ORTHO05D005912 2.4e-85 319.7 225 67.6
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 9.0e-85 317.8 232 68.1
Mapoly0023s0019 Marchantia polymorpha HOM05D004985 ORTHO05D005912 5.6e-79 298.5 219 66.2
Actinidia16126 Actinidia chinensis HOM05D003322 ORTHO05D005912 2.6e-76 289.7 287 54.4
CDE07G0155 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 6.0e-73 278.5 256 53.1
PRCOL_00003809 Prasinoderma coloniale HOM05D004985 ORTHO05D005912 4.3e-71 272.3 230 61.3
Nitab4.5_0000744g0020 Nicotiana tabacum HOM05D004985 ORTHO05D005912 3.2e-66 256.1 425 40.0
MCO16G297 Micromonas commoda HOM05D004985 ORTHO05D005912 1.6e-65 253.8 224 54.9
Lj7A653T48 Lonicera japonica HOM05D004985 ORTHO05D005912 1.6e-62 243.8 142 82.4
SGA_v2.0_scaffold3G01460 Striga asiatica HOM05D004985 ORTHO05D005912 1.1e-61 241.1 142 81.0
Cre04.g217955 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 1.7e-59 233.8 220 51.8
Cre04.g217959 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 1.7e-59 233.8 220 51.8
Nitab4.5_0002968g0050 Nicotiana tabacum HOM05D004985 ORTHO05D005912 1.5e-55 220.7 133 77.4
HPP92_012184 Vanilla planifolia HOM05D004985 ORTHO05D005912 5.3e-53 212.2 185 56.8
Haze_07724 Corylus avellana HOM05D004985 ORTHO05D005912 6.9e-53 211.8 160 66.2
Cre01.g053000 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 1.7e-51 207.2 232 46.6
Cre01.g053150 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 3.8e-51 206.1 253 44.7
Cre10.g421700 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 2.1e-49 200.3 273 39.9
EL10Ac1g02367 Beta vulgaris HOM05D004985 ORTHO05D005912 3.7e-46 189.5 138 70.3
HPP92_012182 Vanilla planifolia HOM05D004985 ORTHO05D005912 3.8e-43 179.5 112 76.8
Gohir.A07G164340 Gossypium hirsutum HOM05D004985 ORTHO05D005912 5.0e-43 179.1 97 90.7
SGA_v2.0_scaffold1066G53824 Striga asiatica HOM05D004985 ORTHO05D005912 4.7e-41 172.6 167 55.1
Gohir.A06G085600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 1.0e-40 171.4 97 88.7
CBR_g37694 Chara braunii HOM05D004985 ORTHO05D005912 3.6e-33 146.4 109 59.6
SEGI_10948 Sequoiadendron giganteum HOM05D004985 ORTHO05D005912 1.2e-31 141.4 81 82.7
SalBow5G1356 Salvia bowleyana HOM05D004985 ORTHO05D005912 1.7e-30 137.5 101 72.3
Cfa004103 Carpinus fangiana HOM05D004985 ORTHO05D005912 1.3e-27 127.9 154 50.6
Peaxi162Scf00086g01110 Petunia axillaris HOM05D004985 ORTHO05D005912 1.7e-27 127.5 158 50.0
Oeu014405.1 Olea europaea HOM05D004985 ORTHO05D005912 2.9e-27 126.7 92 69.6
Haze_15308 Corylus avellana HOM05D004985 ORTHO05D005912 8.3e-22 108.6 67 77.6
SHI27080 Sapria himalayana HOM05D004985 ORTHO05D005912 4.1e-21 106.3 120 50.0
Cfa024059 Carpinus fangiana HOM05D004985 ORTHO05D005912 1.8e-08 64.3 177 32.8
Gohir.A11G205650 Gossypium hirsutum HOM05D041477 ORTHO05D216126 8.3e-06 55.5 34 76.5


User provided reference genes

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