Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_06483 Corchorus olitorius HOM05D003589 ORTHO05D005170 1.7e-144 516.2 292 100.0
Thecc.04G151400 Theobroma cacao HOM05D003589 ORTHO05D005170 5.8e-60 235.3 191 71.2
Duzib151G0965 Durio zibethinus HOM05D003589 ORTHO05D005170 6.4e-59 231.9 193 73.6
Gohir.D10G115400 Gossypium hirsutum HOM05D003589 ORTHO05D005170 1.4e-53 214.2 195 66.7
Gorai.011G127100 Gossypium raimondii HOM05D003589 ORTHO05D005170 3.1e-53 213.0 195 66.2
Gohir.A10G150900 Gossypium hirsutum HOM05D003589 ORTHO05D005170 6.8e-53 211.8 195 67.2
Gohir.A02G003200 Gossypium hirsutum HOM05D003589 ORTHO05D005170 8.1e-46 188.3 194 59.8
Gohir.D02G003600 Gossypium hirsutum HOM05D003589 ORTHO05D005170 1.4e-45 187.6 194 59.8
Gorai.005G004100 Gossypium raimondii HOM05D003589 ORTHO05D005170 1.4e-45 187.6 194 59.8
Dinv25345 Davidia involucrata HOM05D003589 ORTHO05D005170 6.9e-45 185.3 194 54.1
Prupe.6G293800 Prunus persica HOM05D003589 ORTHO05D005170 7.1e-42 175.3 178 56.2
Ciclev10011425m.g Citrus clementina HOM05D003589 ORTHO05D005170 1.6e-41 174.1 186 53.2
Atru.chr8.113 Acer truncatum HOM05D003589 ORTHO05D005170 3.5e-41 172.9 220 49.1
Dinv16976 Davidia involucrata HOM05D003589 ORTHO05D005170 1.0e-40 171.4 194 52.6
FvH4_6g09850 Fragaria vesca HOM05D003589 ORTHO05D005170 3.9e-40 169.5 218 49.1
Cpa.g.sc86.55 Carica papaya HOM05D003589 ORTHO05D005170 6.6e-40 168.7 184 56.5
FAN02G1320 Fragaria x ananassa HOM05D003589 ORTHO05D005170 8.7e-40 168.3 192 52.6
FAN14G2282 Fragaria x ananassa HOM05D003589 ORTHO05D005170 4.3e-39 166.0 192 52.6
FAN05G0190 Fragaria x ananassa HOM05D003589 ORTHO05D005170 5.6e-39 165.6 192 52.1
FAN05G1200 Fragaria x ananassa HOM05D003589 ORTHO05D005170 5.6e-39 165.6 192 52.1
FAN05G4521 Fragaria x ananassa HOM05D003589 ORTHO05D005170 5.6e-39 165.6 192 52.1
QL07p032102 Quercus lobata HOM05D003589 ORTHO05D005170 5.6e-39 165.6 203 53.7
FAN09G1607 Fragaria x ananassa HOM05D003589 ORTHO05D005170 1.3e-38 164.5 192 53.1
RcHm_v2.0_Chr3g0460451 Rosa chinensis HOM05D003589 ORTHO05D005170 2.8e-38 163.3 192 52.1
Haze_21177 Corylus avellana HOM05D003589 ORTHO05D005170 6.2e-38 162.2 192 57.8
MD04G1174800 Malus domestica HOM05D003589 ORTHO05D005170 6.2e-38 162.2 210 47.1
TPR.G14123 Trifolium pratense HOM05D003589 ORTHO05D005170 3.1e-37 159.8 191 52.9
TWI74G0182 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 6.9e-37 158.7 194 50.0
TAR633G1241 Trochodendron aralioides HOM05D003589 ORTHO05D005170 3.4e-36 156.4 235 45.5
Manes.09G118000 Manihot esculenta HOM05D003589 ORTHO05D005170 4.5e-36 156.0 192 51.6
Potri.016G136900 Populus trichocarpa HOM05D003589 ORTHO05D005170 4.5e-36 156.0 224 42.9
Psat3g118720 Pisum sativum HOM05D003589 ORTHO05D005170 1.3e-35 154.5 191 50.3
Actinidia20793 Actinidia chinensis HOM05D003589 ORTHO05D005170 4.9e-35 152.5 195 48.2
Cfa017032 Carpinus fangiana HOM05D003589 ORTHO05D005170 8.4e-35 151.8 183 53.6
Lalb_Chr01g0023761 Lupinus albus HOM05D003589 ORTHO05D005170 8.4e-35 151.8 177 52.0
PGR031G3776 Punica granatum HOM05D003589 ORTHO05D005170 1.1e-34 151.4 186 49.5
Lj1g0021012 Lotus japonicus HOM05D003589 ORTHO05D005170 1.4e-34 151.0 178 55.1
TWI77G0120 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 1.9e-34 150.6 193 49.7
vmacro08941 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 1.9e-34 150.6 186 47.8
Medtr7g073280 Medicago truncatula HOM05D003589 ORTHO05D005170 4.2e-34 149.4 185 51.9
arahy.Tifrunner.gnm1.ann1.IRJT2S Arachis hypogaea HOM05D003589 ORTHO05D005170 5.4e-34 149.1 191 50.8
Glyma.18G213700 Glycine max HOM05D003589 ORTHO05D005170 5.4e-34 149.1 188 53.7
ClCG10G022760 Citrullus lanatus HOM05D003589 ORTHO05D005170 9.3e-34 148.3 184 52.7
Phvul.008G082600 Phaseolus vulgaris HOM05D003589 ORTHO05D005170 1.2e-33 147.9 201 49.8
Potri.006G108400 Populus trichocarpa HOM05D003589 ORTHO05D005170 1.2e-33 147.9 182 48.4
CiPaw.09G221500 Carya illinoinensis HOM05D003589 ORTHO05D005170 1.6e-33 147.5 159 57.9
Glyma.09G274700 Glycine max HOM05D003589 ORTHO05D005170 2.7e-33 146.7 178 52.2
arahy.Tifrunner.gnm1.ann1.US8I5D Arachis hypogaea HOM05D003589 ORTHO05D005170 4.6e-33 146.0 191 50.3
Sc20g0006980 Simmondsia chinensis HOM05D003589 ORTHO05D005170 2.3e-32 143.7 184 48.9
Sabra04G0153600 Salix brachista HOM05D003589 ORTHO05D005170 5.1e-32 142.5 190 47.9
Eucgr.A00727 Eucalyptus grandis HOM05D003589 ORTHO05D005170 6.7e-32 142.1 196 47.4
Rhsim04G0121600 Rhododendron simsii HOM05D003589 ORTHO05D005170 6.7e-32 142.1 209 42.6
Peaxi162Scf00732g00259 Petunia axillaris HOM05D003589 ORTHO05D005170 3.3e-31 139.8 184 44.6
VMungo1383G2329 Vigna mungo HOM05D003589 ORTHO05D005170 3.3e-31 139.8 231 47.2
Sabra06G0084600 Salix brachista HOM05D003589 ORTHO05D005170 9.6e-31 138.3 139 54.0
GSVIVG01030180001 Vitis vinifera HOM05D003589 ORTHO05D005170 1.6e-30 137.5 178 51.7
Nn5g26845 Nelumbo nucifera HOM05D003589 ORTHO05D005170 4.8e-30 136.0 184 46.7
CARHR161170 Cardamine hirsuta HOM05D003589 ORTHO05D005170 8.1e-30 135.2 216 46.3
Aa31LG1G13800 Aethionema arabicum HOM05D003589 ORTHO05D005170 1.1e-29 134.8 218 42.7
Dinv34487 Davidia involucrata HOM05D003589 ORTHO05D005170 1.1e-29 134.8 194 47.9
Aqoxy4G02429 Aquilegia oxysepala HOM05D003589 ORTHO05D005170 1.8e-29 134.0 196 43.9
Nitab4.5_0004433g0040 Nicotiana tabacum HOM05D003589 ORTHO05D005170 2.4e-29 133.7 198 42.9
A03p48340 Brassica napus HOM05D003589 ORTHO05D005170 5.3e-29 132.5 213 46.0
Sed0028030 Sechium edule HOM05D003589 ORTHO05D005170 5.3e-29 132.5 138 57.2
BraA03t13942Z Brassica rapa HOM05D003589 ORTHO05D005170 6.9e-29 132.1 206 46.1
Ca_02266_v3 Cicer arietinum L. HOM05D003589 ORTHO05D005170 6.9e-29 132.1 152 53.3
AT3G51580 Arabidopsis thaliana HOM05D003589 ORTHO05D005170 1.2e-28 131.3 243 42.8
AL5G32020 Arabidopsis lyrata HOM05D003589 ORTHO05D005170 2.0e-28 130.6 207 45.4
CSS0028706 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 2.0e-28 130.6 166 48.8
Nitab4.5_0000048g0030 Nicotiana tabacum HOM05D003589 ORTHO05D005170 2.6e-28 130.2 202 42.6
TAR369G0333 Trochodendron aralioides HOM05D003589 ORTHO05D005170 3.4e-28 129.8 197 43.7
C07p46370 Brassica napus HOM05D003589 ORTHO05D005170 4.5e-28 129.4 223 46.2
Thhalv10010441m.g Eutrema salsugineum HOM05D003589 ORTHO05D005170 4.5e-28 129.4 215 43.3
Sopen09g009460 Solanum pennellii HOM05D003589 ORTHO05D005170 9.9e-28 128.3 186 42.5
THA.LOC104806162 Tarenaya hassleriana HOM05D003589 ORTHO05D005170 9.9e-28 128.3 217 42.4
DCAR_028921 Daucus carota HOM05D003589 ORTHO05D005170 1.7e-27 127.5 243 38.3
BolC7t45155H Brassica oleracea HOM05D003589 ORTHO05D005170 6.4e-27 125.6 222 43.7
Sp5g10690 Schrenkiella parvula HOM05D003589 ORTHO05D005170 8.4e-27 125.2 215 43.7
Solyc09g015530.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 1.1e-26 124.8 186 41.4
BcaC06g33027 Brassica carinata HOM05D003589 ORTHO05D005170 1.4e-26 124.4 212 45.3
MSTRG.5498 Avicennia marina HOM05D003589 ORTHO05D005170 1.9e-26 124.0 235 37.4
Hma1.2p1_0264F.1_g106130 Hydrangea macrophylla HOM05D003589 ORTHO05D005170 1.9e-26 124.0 185 44.3
PGSC0003DMG400026790 Solanum tuberosum HOM05D003589 ORTHO05D005170 1.9e-26 124.0 185 40.5
MBI15_g01602_MAGBIO Magnolia biondii HOM05D003589 ORTHO05D005170 2.4e-26 123.6 261 37.5
AUR62006418 Chenopodium quinoa HOM05D003589 ORTHO05D005170 5.5e-26 122.5 186 44.1
SalBow5G3966 Salvia bowleyana HOM05D003589 ORTHO05D005170 5.5e-26 122.5 210 40.0
MD12G1188500 Malus domestica HOM05D003589 ORTHO05D005170 1.2e-25 121.3 185 44.3
Carub.0005s1794 Capsella rubella HOM05D003589 ORTHO05D005170 2.7e-25 120.2 194 46.4
AUR62029766 Chenopodium quinoa HOM05D003589 ORTHO05D005170 4.6e-25 119.4 238 38.2
Hund03699 Selenicereus undatus HOM05D003589 ORTHO05D005170 4.6e-25 119.4 190 43.2
Actinidia31628 Actinidia chinensis HOM05D003589 ORTHO05D005170 1.3e-24 117.9 188 41.0
Oeu057998.1 Olea europaea HOM05D003589 ORTHO05D005170 1.3e-24 117.9 143 45.5
Ciclev10032400m.g Citrus clementina HOM05D003589 ORTHO05D005170 8.7e-24 115.2 191 38.7
Migut.J00036 Erythranthe guttata HOM05D003589 ORTHO05D005170 8.7e-24 115.2 247 37.7
Peaxi162Scf00167g01218 Petunia axillaris HOM05D003589 ORTHO05D005170 1.5e-23 114.4 189 40.7
Nitab4.5_0002279g0060 Nicotiana tabacum HOM05D003589 ORTHO05D005170 1.9e-23 114.0 179 44.7
EL10Ac7g17103 Beta vulgaris HOM05D003589 ORTHO05D005170 2.5e-23 113.6 186 40.9
CSS0030619 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 3.3e-23 113.2 201 39.8
Ah.15g090010 Amaranthus hybridus HOM05D003589 ORTHO05D005170 4.8e-22 109.4 219 40.2
Manes.08G171100 Manihot esculenta HOM05D003589 ORTHO05D005170 1.4e-21 107.8 149 43.6
PGR142G3587 Punica granatum HOM05D003589 ORTHO05D005170 3.4e-20 103.2 204 39.7
PSO170G6362 Papaver somniferum HOM05D003589 ORTHO05D005170 4.5e-20 102.8 211 37.0
Rhsim03G0152700 Rhododendron simsii HOM05D003589 ORTHO05D005170 1.3e-19 101.3 196 38.8
MELO3C020009.2 Cucumis melo HOM05D003589 ORTHO05D005170 8.4e-19 98.6 217 39.6
Rhsim03G0152300 Rhododendron simsii HOM05D003589 ORTHO05D005170 8.4e-19 98.6 198 38.9
Sopen05g030750 Solanum pennellii HOM05D003589 ORTHO05D005170 1.4e-18 97.8 177 39.5
Nitab4.5_0000375g0230 Nicotiana tabacum HOM05D003589 ORTHO05D005170 3.2e-18 96.7 180 41.1
SGA_v2.0_scaffold85G26610 Striga asiatica HOM05D003589 ORTHO05D005170 3.2e-18 96.7 197 36.5
PGSC0003DMG400011643 Solanum tuberosum HOM05D003589 ORTHO05D005170 7.1e-18 95.5 177 39.0
Cpa.g.sc19.55 Carica papaya HOM05D003589 ORTHO05D005170 2.1e-17 94.0 165 37.6
Eucgr.G03139 Eucalyptus grandis HOM05D003589 ORTHO05D005170 2.7e-17 93.6 189 40.2
CsaV3_6G002320 Cucumis sativus L. HOM05D003589 ORTHO05D005170 7.9e-17 92.0 217 37.3
CANSAT56G1879 Cannabis sativa HOM05D003589 ORTHO05D005170 1.0e-16 91.7 211 37.4
Manes.10G001600 Manihot esculenta HOM05D003589 ORTHO05D005170 1.0e-16 91.7 228 30.3
vmacro06893 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 1.0e-16 91.7 187 36.9
ClCG11G005660 Citrullus lanatus HOM05D003589 ORTHO05D005170 1.3e-16 91.3 181 34.8
Solyc05g052210.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 1.3e-16 91.3 149 37.6
Duzib114G0452 Durio zibethinus HOM05D003589 ORTHO05D005170 1.8e-16 90.9 191 32.5
Lj8A54T74 Lonicera japonica HOM05D003589 ORTHO05D005170 2.3e-16 90.5 201 37.3
ECA247G3378 Erigeron canadensis HOM05D000259 ORTHO05D000155 5.1e-16 89.4 128 43.0
Sed0000653 Sechium edule HOM05D003589 ORTHO05D005170 8.7e-16 88.6 189 34.9
Gohir.A05G402800 Gossypium hirsutum HOM05D003589 ORTHO05D005170 2.5e-15 87.0 185 35.7
Potri.019G058400 Populus trichocarpa HOM05D003589 ORTHO05D005170 3.3e-15 86.7 192 33.9
Thecc.10G179400 Theobroma cacao HOM05D003589 ORTHO05D005170 3.3e-15 86.7 149 38.3
Cc02_g05350 Coffea canephora HOM05D003589 ORTHO05D005170 5.7e-15 85.9 185 34.6
SEGI_11810 Sequoiadendron giganteum HOM05D003589 ORTHO05D005170 2.1e-14 84.0 199 35.7
HanXRQChr10g0287531 Helianthus annuus HOM05D003589 ORTHO05D005170 2.4e-13 80.5 127 44.1
GSVIVG01032671001 Vitis vinifera HOM05D003589 ORTHO05D005170 5.3e-13 79.3 152 34.9
Lsat_1_v5_gn_9_38921 Lactuca sativa HOM05D003589 ORTHO05D005170 6.9e-13 79.0 114 43.0
Gorai.012G015000 Gossypium raimondii HOM05D003589 ORTHO05D005170 4.5e-12 76.3 185 33.5
Gohir.D04G012700 Gossypium hirsutum HOM05D003589 ORTHO05D005170 5.9e-12 75.9 185 33.0
DCAR_014664 Daucus carota HOM05D003589 ORTHO05D005170 1.7e-11 74.3 168 29.2
Os05g0478200 Oryza sativa ssp. japonica HOM05D003589 ORTHO05D005170 2.9e-11 73.6 207 34.8
unitig_578.g15914 Utricularia gibba HOM05D003589 ORTHO05D005170 2.9e-11 73.6 182 31.9
ECA238G2532 Erigeron canadensis HOM05D003589 ORTHO05D005170 5.0e-11 72.8 191 35.1
DCAR_018039 Daucus carota HOM05D003589 ORTHO05D005170 6.5e-11 72.4 220 29.1
HanXRQChr07g0204121 Helianthus annuus HOM05D003589 ORTHO05D005170 1.1e-10 71.6 192 33.3
Oeu060212.1 Olea europaea HOM05D003589 ORTHO05D005170 2.5e-10 70.5 97 48.5
ATR1127G101 Amborella trichopoda HOM05D003589 ORTHO05D005170 3.2e-10 70.1 204 28.9
Zm00001eb352040 Zea mays HOM05D003589 ORTHO05D005170 4.2e-10 69.7 207 31.9
Sabra19G0073800 Salix brachista HOM05D003589 ORTHO05D005170 7.2e-10 68.9 191 33.0
Lsat_1_v5_gn_2_126280 Lactuca sativa HOM05D003589 ORTHO05D005170 9.3e-10 68.6 193 29.0
CiPaw.12G083800 Carya illinoinensis HOM05D007666 ORTHO05D009567 1.2e-09 68.2 192 26.0
Oeu044185.1 Olea europaea HOM05D003589 ORTHO05D005170 2.7e-09 67.0 108 42.6
Potri.001G092300 Populus trichocarpa HOM05D007666 ORTHO05D009567 7.9e-09 65.5 198 30.8
Mapoly0014s0172 Marchantia polymorpha HOM05D029953 ORTHO05D009567 1.0e-08 65.1 216 32.4
MSTRG.169 Avicennia marina HOM05D003589 ORTHO05D005170 1.8e-08 64.3 195 32.3
Zm00001eb290650 Zea mays HOM05D003589 ORTHO05D005170 1.9e-07 60.8 186 30.1
SalBow5G5138 Salvia bowleyana HOM05D003589 ORTHO05D005170 2.5e-07 60.5 207 31.4
QL02p030815 Quercus lobata HOM05D007666 ORTHO05D009567 5.7e-07 59.3 231 27.3
CDE04G2629 Ceratophyllum demersum HOM05D003589 ORTHO05D005170 6.3e-06 55.8 220 30.9


User provided reference genes

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