Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_06384 Corchorus olitorius HOM05D006996 ORTHO05D008961 3.6e-34 147.5 67 100.0
PGR042G2836 Punica granatum HOM05D006996 ORTHO05D008961 2.9e-23 111.3 50 98.0
CiPaw.03G161100 Carya illinoinensis HOM05D006996 ORTHO05D008961 6.4e-23 110.2 50 96.0
Gohir.A02G139400 Gossypium hirsutum HOM05D006996 ORTHO05D008961 8.4e-23 109.8 50 96.0
Gohir.D03G050100 Gossypium hirsutum HOM05D006996 ORTHO05D008961 8.4e-23 109.8 50 96.0
Gorai.003G051600 Gossypium raimondii HOM05D006996 ORTHO05D008961 8.4e-23 109.8 50 96.0
QL08p033312 Quercus lobata HOM05D006996 ORTHO05D008961 1.1e-22 109.4 49 95.9
CANSAT64G1676 Cannabis sativa HOM05D006996 ORTHO05D008961 1.4e-22 109.0 50 94.0
Prupe.3G218000 Prunus persica HOM05D006996 ORTHO05D008961 1.4e-22 109.0 50 96.0
ClCG02G001860 Citrullus lanatus HOM05D006996 ORTHO05D008961 3.2e-22 107.8 50 94.0
Ciclev10017328m.g Citrus clementina HOM05D006996 ORTHO05D008961 3.2e-22 107.8 50 94.0
CsaV3_7G003680 Cucumis sativus L. HOM05D006996 ORTHO05D008961 3.2e-22 107.8 50 94.0
Potri.018G093501 Populus trichocarpa HOM05D006996 ORTHO05D008961 3.2e-22 107.8 50 92.0
Sabra18G0080400 Salix brachista HOM05D006996 ORTHO05D008961 3.2e-22 107.8 50 92.0
Cfa014416 Carpinus fangiana HOM05D006996 ORTHO05D008961 4.2e-22 107.5 50 94.0
MD09G1069700 Malus domestica HOM05D006996 ORTHO05D008961 4.2e-22 107.5 50 94.0
MD17G1095900 Malus domestica HOM05D006996 ORTHO05D008961 4.2e-22 107.5 50 94.0
Manes.13G070800 Manihot esculenta HOM05D006996 ORTHO05D008961 9.3e-22 106.3 50 90.0
Dinv05447 Davidia involucrata HOM05D006996 ORTHO05D008961 1.2e-21 105.9 50 92.0
Dinv39702 Davidia involucrata HOM05D006996 ORTHO05D008961 1.2e-21 105.9 50 92.0
Duzib128G0982 Durio zibethinus HOM05D006996 ORTHO05D008961 1.6e-21 105.5 49 89.8
RcHm_v2.0_Chr2g0159651 Rosa chinensis HOM05D006996 ORTHO05D008961 1.6e-21 105.5 50 94.0
TWI18G0629 Tripterygium wilfordii HOM05D006996 ORTHO05D008961 1.6e-21 105.5 50 92.0
FvH4_6g43320 Fragaria vesca HOM05D006996 ORTHO05D008961 3.5e-21 104.4 50 92.0
FAN14G3455 Fragaria x ananassa HOM05D006996 ORTHO05D008961 3.5e-21 104.4 50 92.0
Sed0014620 Sechium edule HOM05D006996 ORTHO05D008961 3.5e-21 104.4 50 88.0
GSVIVG01012649001 Vitis vinifera HOM05D006996 ORTHO05D008961 3.5e-21 104.4 50 90.0
Hund01114 Selenicereus undatus HOM05D006996 ORTHO05D008961 4.6e-21 104.0 50 90.0
Peaxi162Scf00007g00930 Petunia axillaris HOM05D006996 ORTHO05D008961 6.0e-21 103.6 50 90.0
Solyc07g052420.3 Solanum lycopersicum HOM05D006996 ORTHO05D008961 6.0e-21 103.6 50 88.0
CSS0007447 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 7.9e-21 103.2 50 88.0
Lj1A759T40 Lonicera japonica HOM05D006996 ORTHO05D008961 7.9e-21 103.2 50 90.0
Lj1A760T24 Lonicera japonica HOM05D006996 ORTHO05D008961 7.9e-21 103.2 50 90.0
Nitab4.5_0002137g0190 Nicotiana tabacum HOM05D006996 ORTHO05D008961 7.9e-21 103.2 50 88.0
Nitab4.5_0007092g0010 Nicotiana tabacum HOM05D006996 ORTHO05D008961 7.9e-21 103.2 50 88.0
Sopen07g026050 Solanum pennellii HOM05D006996 ORTHO05D008961 7.9e-21 103.2 50 88.0
PGSC0003DMG400025488 Solanum tuberosum HOM05D006996 ORTHO05D008961 7.9e-21 103.2 50 88.0
Zm00001eb100890 Zea mays HOM05D006996 ORTHO05D008961 7.9e-21 103.2 50 92.0
Zm00001eb209620 Zea mays HOM05D006996 ORTHO05D008961 7.9e-21 103.2 50 92.0
Ah.11g047700 Amaranthus hybridus HOM05D006996 ORTHO05D008961 1.0e-20 102.8 50 88.0
FAN05G4357 Fragaria x ananassa HOM05D006996 ORTHO05D008961 1.0e-20 102.8 50 90.0
MELO3C018811.2 Cucumis melo HOM05D006996 ORTHO05D008961 1.3e-20 102.4 47 91.5
Eucgr.A01713 Eucalyptus grandis HOM05D006996 ORTHO05D008961 1.3e-20 102.4 50 88.0
THA.LOC104800987 Tarenaya hassleriana HOM05D006996 ORTHO05D008961 1.3e-20 102.4 50 90.0
vmacro09127 Vaccinium macrocarpon HOM05D006996 ORTHO05D008961 1.3e-20 102.4 50 88.0
Thecc.05G208500 Theobroma cacao HOM05D006996 ORTHO05D008961 1.8e-20 102.1 44 97.7
TAR676G0001 Trochodendron aralioides HOM05D006996 ORTHO05D008961 1.8e-20 102.1 51 84.3
arahy.Tifrunner.gnm1.ann1.7T5QAW Arachis hypogaea HOM05D006996 ORTHO05D008961 2.3e-20 101.7 47 91.5
arahy.Tifrunner.gnm1.ann1.BHY6M8 Arachis hypogaea HOM05D006996 ORTHO05D008961 2.3e-20 101.7 47 91.5
arahy.Tifrunner.gnm1.ann1.MSE8LU Arachis hypogaea HOM05D006996 ORTHO05D008961 2.3e-20 101.7 47 91.5
arahy.Tifrunner.gnm1.ann1.QWF8TS Arachis hypogaea HOM05D006996 ORTHO05D008961 2.3e-20 101.7 47 91.5
Aa31LG1G19540 Aethionema arabicum HOM05D006996 ORTHO05D008961 3.0e-20 101.3 50 88.0
CDE05G0144 Ceratophyllum demersum HOM05D006996 ORTHO05D008961 3.0e-20 101.3 51 88.2
AUR62008544 Chenopodium quinoa HOM05D006996 ORTHO05D008961 3.0e-20 101.3 50 88.0
Cc05_g04850 Coffea canephora HOM05D006996 ORTHO05D008961 3.0e-20 101.3 50 86.0
Glyma.12G194300 Glycine max HOM05D006996 ORTHO05D008961 3.9e-20 100.9 47 89.4
HPP92_011134 Vanilla planifolia HOM05D006996 ORTHO05D008961 3.9e-20 100.9 51 88.2
MSTRG.6557 Avicennia marina HOM05D006996 ORTHO05D008961 5.1e-20 100.5 50 88.0
FAN02G2509 Fragaria x ananassa HOM05D006996 ORTHO05D008961 5.1e-20 100.5 50 90.0
Lsat_1_v5_gn_5_163860 Lactuca sativa HOM05D006996 ORTHO05D008961 5.1e-20 100.5 50 88.0
Medtr2g088460 Medicago truncatula HOM05D006996 ORTHO05D008961 5.1e-20 100.5 45 93.3
Oeu027249.1 Olea europaea HOM05D006996 ORTHO05D008961 5.1e-20 100.5 50 86.0
TPR.G4182 Trifolium pratense HOM05D006996 ORTHO05D008961 5.1e-20 100.5 52 88.5
AUR62000730 Chenopodium quinoa HOM05D006996 ORTHO05D008961 6.7e-20 100.1 50 86.0
Hma1.2p1_0957F.1_g241430 Hydrangea macrophylla HOM05D006996 ORTHO05D008961 6.7e-20 100.1 50 88.0
EL10Ac5g11141 Beta vulgaris HOM05D006996 ORTHO05D008961 1.1e-19 99.4 50 84.0
Aqoxy1G03305 Aquilegia oxysepala HOM05D006996 ORTHO05D008961 1.5e-19 99.0 49 83.7
CSS0016840 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 1.5e-19 99.0 49 85.7
Carub.0001s0448 Capsella rubella HOM05D006996 ORTHO05D008961 1.5e-19 99.0 50 86.0
Thhalv10009219m.g Eutrema salsugineum HOM05D006996 ORTHO05D008961 1.5e-19 99.0 50 88.0
Sp1g04060 Schrenkiella parvula HOM05D006996 ORTHO05D008961 1.5e-19 99.0 50 88.0
SpUn0024_0080 Schrenkiella parvula HOM05D006996 ORTHO05D008961 1.5e-19 99.0 50 88.0
BcaC07g42146 Brassica carinata HOM05D006996 ORTHO05D008961 1.9e-19 98.6 49 87.8
AUR62021549 Chenopodium quinoa HOM05D006996 ORTHO05D008961 1.9e-19 98.6 50 84.0
HanXRQChr11g0350381 Helianthus annuus HOM05D006996 ORTHO05D008961 1.9e-19 98.6 50 86.0
CDE11G0800 Ceratophyllum demersum HOM05D006996 ORTHO05D008961 2.5e-19 98.2 51 86.3
PSO541G2316 Papaver somniferum HOM05D006996 ORTHO05D008961 2.5e-19 98.2 50 86.0
PSO675G8615 Papaver somniferum HOM05D006996 ORTHO05D008961 2.5e-19 98.2 50 86.0
A10p03740 Brassica napus HOM05D006996 ORTHO05D008961 4.3e-19 97.4 50 86.0
C05p03440 Brassica napus HOM05D006996 ORTHO05D008961 4.3e-19 97.4 50 86.0
C08p51920 Brassica napus HOM05D006996 ORTHO05D008961 4.3e-19 97.4 49 85.7
BolC5t29123H Brassica oleracea HOM05D006996 ORTHO05D008961 4.3e-19 97.4 50 86.0
BolC8t52723H Brassica oleracea HOM05D006996 ORTHO05D008961 4.3e-19 97.4 49 85.7
BraA09t42088Z Brassica rapa HOM05D006996 ORTHO05D008961 4.3e-19 97.4 49 85.7
BraA10t42647Z Brassica rapa HOM05D006996 ORTHO05D008961 4.3e-19 97.4 50 86.0
AT1G05205 Arabidopsis thaliana HOM05D006996 ORTHO05D008961 7.4e-19 96.7 49 85.7
ECA248G0348 Erigeron canadensis HOM05D006996 ORTHO05D008961 7.4e-19 96.7 49 81.6
AL1G14970 Arabidopsis lyrata HOM05D006996 ORTHO05D008961 9.6e-19 96.3 49 85.7
CAN.G846.6 Capsicum annuum HOM05D006996 ORTHO05D008961 2.8e-18 94.7 50 80.0
Phvul.005G114700 Phaseolus vulgaris HOM05D006996 ORTHO05D008961 3.6e-18 94.4 45 86.7
Glyma.13G308300 Glycine max HOM05D006996 ORTHO05D008961 8.1e-18 93.2 47 83.0
Lj3g0015321 Lotus japonicus HOM05D006996 ORTHO05D008961 1.1e-17 92.8 43 90.7
Actinidia30517 Actinidia chinensis HOM05D006996 ORTHO05D008961 1.4e-17 92.4 51 84.3
unitig_21.g20728 Utricularia gibba HOM05D006996 ORTHO05D008961 2.4e-17 91.7 43 90.7
SalBow7G3715 Salvia bowleyana HOM05D006996 ORTHO05D008961 6.9e-17 90.1 50 78.0
CARHR004680 Cardamine hirsuta HOM05D006996 ORTHO05D008961 9.0e-17 89.7 49 81.6
Migut.M00413 Erythranthe guttata HOM05D006996 ORTHO05D008961 4.5e-16 87.4 49 77.6
Nn2g12174 Nelumbo nucifera HOM05D006996 ORTHO05D008961 7.6e-16 86.7 74 60.8
Lalb_Chr14g0375741 Lupinus albus HOM05D006996 ORTHO05D008961 1.7e-15 85.5 41 82.9
SEGI_13346 Sequoiadendron giganteum HOM05D006996 ORTHO05D008961 1.0e-12 76.3 50 68.0
Mapoly0024s0016 Marchantia polymorpha HOM05D006996 ORTHO05D008961 7.4e-11 70.1 42 61.9
Sc12g0002320 Simmondsia chinensis HOM05D006996 ORTHO05D008961 1.8e-09 65.5 27 96.3
CSS0029979 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 3.1e-09 64.7 31 80.6
Lsat_1_v5_gn_4_184120 Lactuca sativa HOM05D006996 ORTHO05D008961 4.0e-09 64.3 27 92.6
Psat5g264240 Pisum sativum HOM05D006996 ORTHO05D008961 9.0e-09 63.2 26 96.2
DCAR_014473 Daucus carota HOM05D006996 ORTHO05D008961 1.5e-08 62.4 27 92.6
TAR627G0363 Trochodendron aralioides HOM05D006996 ORTHO05D008961 5.8e-08 60.5 25 96.0
MCO13G082 Micromonas commoda HOM05D006996 ORTHO05D008961 5.5e-06 53.9 44 54.5


User provided reference genes

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