Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_06320 Corchorus olitorius HOM05D007041 ORTHO05D008036 6.3e-79 297.4 149 100.0
Thecc.01G346300 Theobroma cacao HOM05D007041 ORTHO05D008036 1.1e-38 163.7 137 70.1
Gohir.D08G147100 Gossypium hirsutum HOM05D007041 ORTHO05D008036 1.3e-23 113.6 127 59.8
Gorai.004G152600 Gossypium raimondii HOM05D007041 ORTHO05D008036 1.3e-23 113.6 127 59.8
MD07G1146000 Malus domestica HOM05D007041 ORTHO05D008036 1.6e-21 106.7 121 47.9
Prupe.2G184300 Prunus persica HOM05D007041 ORTHO05D008036 6.0e-21 104.8 135 50.4
TAR629G2489 Trochodendron aralioides HOM05D007041 ORTHO05D008036 3.3e-19 99.0 128 47.7
Gohir.D07G144400 Gossypium hirsutum HOM05D007041 ORTHO05D008036 2.1e-18 96.3 103 58.3
Gorai.001G156400 Gossypium raimondii HOM05D007041 ORTHO05D008036 2.1e-18 96.3 103 58.3
Gohir.A07G139300 Gossypium hirsutum HOM05D007041 ORTHO05D008036 3.6e-18 95.5 103 57.3
Atru.chr5.628 Acer truncatum HOM05D007041 ORTHO05D008036 6.9e-17 91.3 140 42.9
RcHm_v2.0_Chr1g0358991 Rosa chinensis HOM05D007041 ORTHO05D008036 1.5e-16 90.1 123 46.3
FAN10G1361 Fragaria x ananassa HOM05D007041 ORTHO05D008036 2.2e-15 86.3 126 44.4
FAN03G1744 Fragaria x ananassa HOM05D007041 ORTHO05D008036 4.9e-15 85.1 123 44.7
FvH4_7g16050 Fragaria vesca HOM05D007041 ORTHO05D008036 1.1e-14 84.0 123 43.9
FAN10G2988 Fragaria x ananassa HOM05D007041 ORTHO05D008036 1.1e-14 84.0 126 43.7
TAR636G2915 Trochodendron aralioides HOM05D007041 ORTHO05D008036 1.1e-14 84.0 126 42.9
QL02p031389 Quercus lobata HOM05D007041 ORTHO05D008036 1.9e-14 83.2 125 40.8
FAN06G2039 Fragaria x ananassa HOM05D007041 ORTHO05D008036 3.2e-14 82.4 126 42.9
CiPaw.02G039100 Carya illinoinensis HOM05D007041 ORTHO05D008036 7.1e-14 81.3 146 41.8
Potri.002G168300 Populus trichocarpa HOM05D007041 ORTHO05D008036 6.0e-13 78.2 132 37.9
Glyma.07G057800 Glycine max HOM05D007041 ORTHO05D008036 1.0e-12 77.4 92 46.7
Cpa.g.sc2382.1 Carica papaya HOM05D007041 ORTHO05D008036 1.8e-12 76.6 72 62.5
CiPaw.01G073300 Carya illinoinensis HOM05D007041 ORTHO05D008036 1.8e-12 76.6 66 60.6
FAN06G3979 Fragaria x ananassa HOM05D007041 ORTHO05D008036 2.3e-12 76.3 59 61.0
Gorai.007G106700 Gossypium raimondii HOM05D066925 ORTHO05D047563 3.9e-12 75.5 121 43.8
Lalb_Chr17g0342361 Lupinus albus HOM05D007041 ORTHO05D008036 5.1e-12 75.1 112 43.8
EL10Ac1g00306 Beta vulgaris HOM05D007041 ORTHO05D008036 6.7e-12 74.7 93 50.5
VMungo0331G1585 Vigna mungo HOM05D007041 ORTHO05D008036 6.7e-12 74.7 46 69.6
CANSAT56G1227 Cannabis sativa HOM05D007041 ORTHO05D008036 8.7e-12 74.3 108 46.3
Glyma.16G026800 Glycine max HOM05D007041 ORTHO05D008036 1.1e-11 73.9 70 51.4
Sabra14G0070100 Salix brachista HOM05D007041 ORTHO05D008036 1.1e-11 73.9 137 40.9
Gohir.A11G095550 Gossypium hirsutum HOM05D066925 ORTHO05D047563 1.9e-11 73.2 121 42.1
Sc01g0010130 Simmondsia chinensis HOM05D007041 ORTHO05D008036 1.9e-11 73.2 135 36.3
CSS0049473 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 5.6e-11 71.6 131 38.2
Nn1g01816 Nelumbo nucifera HOM05D007041 ORTHO05D008036 5.6e-11 71.6 103 45.6
Potri.014G095600 Populus trichocarpa HOM05D007041 ORTHO05D008036 5.6e-11 71.6 123 43.9
CSS0039531 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 7.4e-11 71.2 98 44.9
CSS0019600 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 9.6e-11 70.9 132 38.6
vmacro22517 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 9.6e-11 70.9 120 40.0
AL5G44060 Arabidopsis lyrata HOM05D007041 ORTHO05D008036 1.3e-10 70.5 113 39.8
Oeu009948.1 Olea europaea HOM05D007041 ORTHO05D008036 1.3e-10 70.5 126 34.1
Nn3g19073 Nelumbo nucifera HOM05D007041 ORTHO05D008036 1.6e-10 70.1 125 42.4
Phvul.010G111500 Phaseolus vulgaris HOM05D007041 ORTHO05D008036 1.6e-10 70.1 107 35.5
Rhsim01G0170500 Rhododendron simsii HOM05D007041 ORTHO05D008036 2.1e-10 69.7 137 37.2
vmacro22515 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 2.1e-10 69.7 121 36.4
AUR62023489 Chenopodium quinoa HOM05D007041 ORTHO05D008036 3.7e-10 68.9 55 63.6
Medtr8g027915 Medicago truncatula HOM05D007041 ORTHO05D008036 4.8e-10 68.6 56 57.1
Manes.02G012400 Manihot esculenta HOM05D007041 ORTHO05D008036 1.1e-09 67.4 140 32.9
BraA09t40795Z Brassica rapa HOM05D007041 ORTHO05D008036 1.4e-09 67.0 92 45.7
Nitab4.5_0000305g0050 Nicotiana tabacum HOM05D007041 ORTHO05D008036 1.4e-09 67.0 59 59.3
MELO3C006045.2 Cucumis melo HOM05D007041 ORTHO05D008036 1.8e-09 66.6 104 38.5
Lj3g0003817 Lotus japonicus HOM05D007041 ORTHO05D008036 1.8e-09 66.6 114 39.5
Manes.01G248300 Manihot esculenta HOM05D007041 ORTHO05D008036 1.8e-09 66.6 122 44.3
Manes.05G025400 Manihot esculenta HOM05D007041 ORTHO05D008036 1.8e-09 66.6 131 35.1
Medtr8g027905 Medicago truncatula HOM05D001941 ORTHO05D008036 1.8e-09 66.6 67 52.2
TPR.G7661 Trifolium pratense HOM05D007041 ORTHO05D008036 1.8e-09 66.6 54 55.6
C08p36510 Brassica napus HOM05D007041 ORTHO05D008036 2.4e-09 66.2 103 38.8
BolC8t51234H Brassica oleracea HOM05D007041 ORTHO05D008036 2.4e-09 66.2 103 38.8
Nn2g15118 Nelumbo nucifera HOM05D007041 ORTHO05D008036 2.4e-09 66.2 103 42.7
Rhsim07G0006100 Rhododendron simsii HOM05D000337 ORTHO05D000297 2.4e-09 66.2 126 38.9
A09p53730 Brassica napus HOM05D007041 ORTHO05D008036 3.1e-09 65.9 92 41.3
CsaV3_3G008250 Cucumis sativus L. HOM05D007041 ORTHO05D008036 3.1e-09 65.9 69 47.8
Nitab4.5_0007594g0010 Nicotiana tabacum HOM05D007041 ORTHO05D008036 3.1e-09 65.9 57 59.6
Rhsim01G0170200 Rhododendron simsii HOM05D007041 ORTHO05D008036 3.1e-09 65.9 135 35.6
Sabra02G0143600 Salix brachista HOM05D007041 ORTHO05D008036 4.0e-09 65.5 107 44.9
Manes.02G012350 Manihot esculenta HOM05D007041 ORTHO05D008036 5.3e-09 65.1 140 32.9
AT3G61660 Arabidopsis thaliana HOM05D007041 ORTHO05D008036 6.9e-09 64.7 92 43.5
Carub.0005s2835 Capsella rubella HOM05D007041 ORTHO05D008036 6.9e-09 64.7 114 36.0
Peaxi162Scf00843g00001 Petunia axillaris HOM05D007041 ORTHO05D008036 6.9e-09 64.7 131 35.1
vmacro22516 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 6.9e-09 64.7 121 36.4
Actinidia28494 Actinidia chinensis HOM05D000017 ORTHO05D008036 1.2e-08 63.9 87 51.7
arahy.Tifrunner.gnm1.ann1.LKBY4F Arachis hypogaea HOM05D007041 ORTHO05D008036 2.0e-08 63.2 79 44.3
Lsat_1_v5_gn_7_2180 Lactuca sativa HOM05D007041 ORTHO05D008036 2.6e-08 62.8 116 33.6
Potri.003G137600 Populus trichocarpa HOM05D007041 ORTHO05D008036 2.6e-08 62.8 62 48.4
CARHR171970 Cardamine hirsuta HOM05D007041 ORTHO05D008036 3.4e-08 62.4 112 37.5
CiPaw.12G084900 Carya illinoinensis HOM05D007041 ORTHO05D008036 3.4e-08 62.4 46 56.5
Medtr8g027305 Medicago truncatula HOM05D007041 ORTHO05D008036 5.8e-08 61.6 62 53.2
Thhalv10006386m.g Eutrema salsugineum HOM05D007041 ORTHO05D008036 7.6e-08 61.2 95 37.9
Oeu007855.1 Olea europaea HOM05D007041 ORTHO05D008036 7.6e-08 61.2 126 34.9
Potri.001G094000 Populus trichocarpa HOM05D007041 ORTHO05D008036 9.9e-08 60.8 126 36.5
Sp5g01745 Schrenkiella parvula HOM05D007041 ORTHO05D008036 9.9e-08 60.8 68 47.1
Thecc.03G293400 Theobroma cacao HOM05D007041 ORTHO05D008036 1.7e-07 60.1 45 57.8
ECA236G3839 Erigeron canadensis HOM05D007041 ORTHO05D008036 2.2e-07 59.7 77 42.9
Sed0010994 Sechium edule HOM05D007041 ORTHO05D008036 2.2e-07 59.7 30 80.0
Prupe.5G115500 Prunus persica HOM05D007041 ORTHO05D008036 2.9e-07 59.3 46 58.7
RcHm_v2.0_Chr7g0195411 Rosa chinensis HOM05D017100 ORTHO05D008036 2.9e-07 59.3 43 62.8
HPP92_007621 Vanilla planifolia HOM05D007041 ORTHO05D008036 2.9e-07 59.3 58 56.9
Oeu007854.1 Olea europaea HOM05D007041 ORTHO05D008036 6.4e-07 58.2 133 30.8
Os01g0656300 Oryza sativa ssp. japonica HOM05D007041 ORTHO05D008036 6.4e-07 58.2 40 62.5
SalBow3G2736 Salvia bowleyana HOM05D007041 ORTHO05D008036 6.4e-07 58.2 115 35.7
Sabra01G0069900 Salix brachista HOM05D007041 ORTHO05D008036 8.4e-07 57.8 114 36.0
arahy.Tifrunner.gnm1.ann1.JU2T19 Arachis hypogaea HOM05D007041 ORTHO05D008036 1.1e-06 57.4 80 38.8
Ca_09497_v3 Cicer arietinum L. HOM05D007041 ORTHO05D008036 1.1e-06 57.4 128 39.1
Gohir.A12G234950 Gossypium hirsutum HOM05D007041 ORTHO05D008036 1.1e-06 57.4 45 62.2
Gohir.D12G236050 Gossypium hirsutum HOM05D007041 ORTHO05D008036 1.1e-06 57.4 45 62.2
Gorai.008G252800 Gossypium raimondii HOM05D007041 ORTHO05D008036 1.1e-06 57.4 45 62.2
Haze_08658 Corylus avellana HOM05D007041 ORTHO05D008036 1.4e-06 57.0 76 44.7
Migut.B01841 Erythranthe guttata HOM05D007041 ORTHO05D008036 2.4e-06 56.2 112 34.8
Glyma.19G254100 Glycine max HOM05D007041 ORTHO05D008036 2.4e-06 56.2 74 43.2
Sopen08g030330 Solanum pennellii HOM05D002045 ORTHO05D002014 3.2e-06 55.8 34 73.5
PGSC0003DMG400012302 Solanum tuberosum HOM05D007041 ORTHO05D008036 3.2e-06 55.8 34 73.5
TPR.G7659 Trifolium pratense HOM05D007041 ORTHO05D008036 3.2e-06 55.8 67 46.3
Zm00001eb310140 Zea mays HOM05D007041 ORTHO05D008036 3.2e-06 55.8 46 52.2
Zm00001eb441140 Zea mays HOM05D007041 ORTHO05D008036 3.2e-06 55.8 46 52.2
PGSC0003DMG400000096 Solanum tuberosum HOM05D007041 ORTHO05D008036 7.1e-06 54.7 48 54.2


User provided reference genes

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