Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_06028 Corchorus olitorius HOM05D001772 ORTHO05D005958 4.8e-58 227.6 117 100.0
SalBow3G2334 Salvia bowleyana HOM05D001772 ORTHO05D005958 4.0e-12 75.1 62 61.3
MBI06_g29328_MAGBIO Magnolia biondii HOM05D001772 ORTHO05D005958 1.2e-11 73.6 44 75.0
Solyc10g009570.3 Solanum lycopersicum HOM05D001772 ORTHO05D005958 2.0e-11 72.8 69 58.0
Sopen10g005380 Solanum pennellii HOM05D001772 ORTHO05D005958 2.0e-11 72.8 69 58.0
Oeu043209.1 Olea europaea HOM05D001772 ORTHO05D005958 3.4e-11 72.0 44 77.3
COL.COLO4_06308 Corchorus olitorius HOM05D001772 ORTHO05D005958 4.4e-11 71.6 44 77.3
Nitab4.5_0000838g0040 Nicotiana tabacum HOM05D001772 ORTHO05D005958 4.4e-11 71.6 44 77.3
AUR62004468 Chenopodium quinoa HOM05D001772 ORTHO05D005958 5.8e-11 71.2 63 57.1
PGSC0003DMG400019883 Solanum tuberosum HOM05D001772 ORTHO05D005958 5.8e-11 71.2 69 56.5
SGA_v2.0_scaffold5G03005 Striga asiatica HOM05D001772 ORTHO05D005958 5.8e-11 71.2 35 91.4
Actinidia28128 Actinidia chinensis HOM05D001772 ORTHO05D005958 7.5e-11 70.9 44 77.3
Ah.05g179770 Amaranthus hybridus HOM05D001772 ORTHO05D005958 7.5e-11 70.9 59 57.6
Nitab4.5_0000360g0010 Nicotiana tabacum HOM05D001772 ORTHO05D005958 7.5e-11 70.9 69 55.1
Nitab4.5_0001123g0060 Nicotiana tabacum HOM05D001772 ORTHO05D005958 7.5e-11 70.9 69 55.1
CAN.G818.1 Capsicum annuum HOM05D001772 ORTHO05D005958 9.9e-11 70.5 69 56.5
AUR62023482 Chenopodium quinoa HOM05D001772 ORTHO05D005958 9.9e-11 70.5 59 57.6
Lalb_Chr10g0100391 Lupinus albus HOM05D001772 ORTHO05D005958 9.9e-11 70.5 43 79.1
Nn1g01834 Nelumbo nucifera HOM05D001772 ORTHO05D005958 9.9e-11 70.5 44 77.3
Peaxi162Scf00218g00416 Petunia axillaris HOM05D001772 ORTHO05D005958 9.9e-11 70.5 43 79.1
Hund16701 Selenicereus undatus HOM05D001772 ORTHO05D005958 9.9e-11 70.5 35 88.6
CAN.G986.28 Capsicum annuum HOM05D001772 ORTHO05D005958 1.3e-10 70.1 44 77.3
Duzib138G1424 Durio zibethinus HOM05D001772 ORTHO05D005958 1.3e-10 70.1 35 85.7
Lj3g0001091 Lotus japonicus HOM05D001772 ORTHO05D005958 1.3e-10 70.1 69 56.5
Nn3g19052 Nelumbo nucifera HOM05D001772 ORTHO05D005958 1.3e-10 70.1 44 75.0
Oeu007904.1 Olea europaea HOM05D001772 ORTHO05D005958 1.3e-10 70.1 66 56.1
Peaxi162Scf00786g00450 Petunia axillaris HOM05D001772 ORTHO05D005958 1.3e-10 70.1 44 77.3
Solyc01g095670.4 Solanum lycopersicum HOM05D001772 ORTHO05D005958 1.3e-10 70.1 44 77.3
Sopen01g039410 Solanum pennellii HOM05D001772 ORTHO05D005958 1.3e-10 70.1 44 77.3
PGSC0003DMG400000214 Solanum tuberosum HOM05D001772 ORTHO05D005958 1.3e-10 70.1 44 77.3
vmacro20858 Vaccinium macrocarpon HOM05D001772 ORTHO05D005958 1.3e-10 70.1 44 75.0
arahy.Tifrunner.gnm1.ann1.8C9R1J Arachis hypogaea HOM05D001772 ORTHO05D005958 1.7e-10 69.7 43 76.7
arahy.Tifrunner.gnm1.ann1.DXZ71K Arachis hypogaea HOM05D001772 ORTHO05D005958 1.7e-10 69.7 43 76.7
CANSAT56G1036 Cannabis sativa HOM05D001772 ORTHO05D008903 1.7e-10 69.7 44 77.3
Eucgr.E00068 Eucalyptus grandis HOM05D001772 ORTHO05D005958 1.7e-10 69.7 44 75.0
Gohir.A08G125900 Gossypium hirsutum HOM05D001772 ORTHO05D005958 1.7e-10 69.7 35 85.7
Gohir.D08G147000 Gossypium hirsutum HOM05D001772 ORTHO05D005958 1.7e-10 69.7 35 85.7
Gorai.004G152500 Gossypium raimondii HOM05D001772 ORTHO05D005958 1.7e-10 69.7 35 85.7
Potri.014G096500 Populus trichocarpa HOM05D001772 ORTHO05D005958 1.7e-10 69.7 44 75.0
Prupe.2G185500 Prunus persica HOM05D001772 ORTHO05D005958 1.7e-10 69.7 44 77.3
PGR042G0802 Punica granatum HOM05D001772 ORTHO05D005958 1.7e-10 69.7 44 75.0
QL04p056704 Quercus lobata HOM05D001772 ORTHO05D005958 1.7e-10 69.7 44 75.0
Sc23g0002200 Simmondsia chinensis HOM05D001772 ORTHO05D005958 1.7e-10 69.7 35 85.7
FvH4_7g16190 Fragaria vesca HOM05D001772 ORTHO05D005958 2.2e-10 69.3 69 55.1
FAN01G1646 Fragaria x ananassa HOM05D001772 ORTHO05D008903 2.2e-10 69.3 44 75.0
FAN03G0169 Fragaria x ananassa HOM05D001772 ORTHO05D008903 2.2e-10 69.3 44 75.0
FAN06G2365 Fragaria x ananassa HOM05D001772 ORTHO05D008903 2.2e-10 69.3 69 55.1
FAN06G4998 Fragaria x ananassa HOM05D001772 ORTHO05D008903 2.2e-10 69.3 69 55.1
FAN10G1004 Fragaria x ananassa HOM05D001772 ORTHO05D005958 2.2e-10 69.3 44 75.0
FAN10G2954 Fragaria x ananassa HOM05D001772 ORTHO05D008903 2.2e-10 69.3 44 75.0
Nitab4.5_0011592g0020 Nicotiana tabacum HOM05D001772 ORTHO05D005958 2.2e-10 69.3 44 77.3
Rhsim01G0171300 Rhododendron simsii HOM05D001772 ORTHO05D005958 2.2e-10 69.3 35 85.7
RcHm_v2.0_Chr1g0359191 Rosa chinensis HOM05D001772 ORTHO05D005958 2.2e-10 69.3 40 77.5
Hund27213 Selenicereus undatus HOM05D001772 ORTHO05D005958 2.2e-10 69.3 59 57.6
SGA_v2.0_scaffold43G16374 Striga asiatica HOM05D001772 ORTHO05D005958 2.2e-10 69.3 43 76.7
TWI23G1206 Tripterygium wilfordii HOM05D001772 ORTHO05D005958 2.2e-10 69.3 44 75.0
BcaC04g24121 Brassica carinata HOM05D001772 ORTHO05D005958 2.9e-10 68.9 44 75.0
Cfa003819 Carpinus fangiana HOM05D001772 ORTHO05D008903 2.9e-10 68.9 69 55.1
Haze_15634 Corylus avellana HOM05D001772 ORTHO05D005958 2.9e-10 68.9 69 53.6
Glyma.16G026200 Glycine max HOM05D001772 ORTHO05D005958 2.9e-10 68.9 43 76.7
MD07G1147500 Malus domestica HOM05D001772 ORTHO05D005958 2.9e-10 68.9 44 75.0
VMungo0331G1517 Vigna mungo HOM05D001772 ORTHO05D005958 2.9e-10 68.9 43 76.7
EL10Ac1g00296 Beta vulgaris HOM05D001772 ORTHO05D005958 3.7e-10 68.6 59 57.6
BcaC04g24115 Brassica carinata HOM05D001772 ORTHO05D005958 3.7e-10 68.6 44 72.7
C09p00870 Brassica napus HOM05D001772 ORTHO05D005958 3.7e-10 68.6 44 72.7
BolC9t53021H Brassica oleracea HOM05D001772 ORTHO05D005958 3.7e-10 68.6 44 72.7
Cpa.g.sc490.2 Carica papaya HOM05D001772 ORTHO05D005958 3.7e-10 68.6 44 75.0
Glyma.07G057200 Glycine max HOM05D001772 ORTHO05D005958 3.7e-10 68.6 43 76.7
Lalb_Chr17g0342481 Lupinus albus HOM05D001772 ORTHO05D005958 3.7e-10 68.6 34 88.2
Phvul.010G112100 Phaseolus vulgaris HOM05D001772 ORTHO05D005958 3.7e-10 68.6 43 74.4
Aqoxy5G04175 Aquilegia oxysepala HOM05D001772 ORTHO05D005958 4.9e-10 68.2 44 75.0
CANSAT56G1679 Cannabis sativa HOM05D001772 ORTHO05D008903 4.9e-10 68.2 44 75.0
Dinv32568 Davidia involucrata HOM05D001772 ORTHO05D005958 4.9e-10 68.2 45 68.9
Duzib133G1484 Durio zibethinus HOM05D001772 ORTHO05D005958 4.9e-10 68.2 35 82.9
Manes.05G024700 Manihot esculenta HOM05D001772 ORTHO05D005958 4.9e-10 68.2 44 75.0
Atru.chr5.643 Acer truncatum HOM05D001772 ORTHO05D005958 6.4e-10 67.8 44 72.7
Actinidia20227 Actinidia chinensis HOM05D001772 ORTHO05D005958 6.4e-10 67.8 44 75.0
Aa31LG5G910 Aethionema arabicum HOM05D001772 ORTHO05D005958 6.4e-10 67.8 44 72.7
CARHR249260 Cardamine hirsuta HOM05D001772 ORTHO05D005958 6.4e-10 67.8 44 75.0
CiPaw.01G074300 Carya illinoinensis HOM05D001772 ORTHO05D005958 6.4e-10 67.8 44 72.7
HanXRQChr11g0353041 Helianthus annuus HOM05D001772 ORTHO05D005958 6.4e-10 67.8 44 72.7
Hma1.2p1_0077F.1_g039660 Hydrangea macrophylla HOM05D001772 ORTHO05D005958 6.4e-10 67.8 44 75.0
MBI06_g46728_MAGBIO Magnolia biondii HOM05D001772 ORTHO05D005958 6.4e-10 67.8 44 72.7
Os02g0257300 Oryza sativa ssp. japonica HOM05D001772 ORTHO05D005958 6.4e-10 67.8 39 74.4
Psat4g160440 Pisum sativum HOM05D001772 ORTHO05D005958 6.4e-10 67.8 44 72.7
Potri.002G169100 Populus trichocarpa HOM05D001772 ORTHO05D005958 6.4e-10 67.8 44 72.7
Sabra02G0143000 Salix brachista HOM05D001772 ORTHO05D005958 6.4e-10 67.8 44 72.7
DCAR_008656 Daucus carota HOM05D001772 ORTHO05D005958 8.3e-10 67.4 35 82.9
Thecc.01G345000 Theobroma cacao HOM05D001772 ORTHO05D005958 8.3e-10 67.4 44 72.7
TPR.G7664 Trifolium pratense HOM05D001772 ORTHO05D005958 8.3e-10 67.4 44 72.7
AL6G52330 Arabidopsis lyrata HOM05D001772 ORTHO05D005958 1.1e-09 67.0 44 72.7
arahy.Tifrunner.gnm1.ann1.F3DNBB Arachis hypogaea HOM05D001772 ORTHO05D005958 1.1e-09 67.0 43 74.4
arahy.Tifrunner.gnm1.ann1.G8BSRK Arachis hypogaea HOM05D001772 ORTHO05D005958 1.1e-09 67.0 43 74.4
A09p00240 Brassica napus HOM05D001772 ORTHO05D005958 1.1e-09 67.0 44 70.5
BraA09t35751Z Brassica rapa HOM05D001772 ORTHO05D005958 1.1e-09 67.0 44 70.5
CSS0019350 Camellia sinensis var. sinensis HOM05D001772 ORTHO05D005958 1.1e-09 67.0 44 72.7
Carub.0006s3611 Capsella rubella HOM05D001772 ORTHO05D005958 1.1e-09 67.0 44 72.7
Dinv18731 Davidia involucrata HOM05D001772 ORTHO05D008903 1.1e-09 67.0 44 72.7
Lsat_1_v5_gn_3_139620 Lactuca sativa HOM05D001772 ORTHO05D005958 1.1e-09 67.0 43 74.4
Sabra14G0070800 Salix brachista HOM05D001772 ORTHO05D008903 1.1e-09 67.0 44 72.7
Sp6g01090 Schrenkiella parvula HOM05D001772 ORTHO05D005958 1.1e-09 67.0 44 72.7
unitig_8.g4994 Utricularia gibba HOM05D000331 ORTHO05D005958 1.1e-09 67.0 36 80.6
BcaB01g02344 Brassica carinata HOM05D001772 ORTHO05D005958 1.4e-09 66.6 35 82.9
Ca_26358_v3 Cicer arietinum L. HOM05D001772 ORTHO05D005958 1.4e-09 66.6 44 70.5
AT4G01050 Arabidopsis thaliana HOM05D001772 ORTHO05D005958 1.9e-09 66.2 35 82.9
MSTRG.17331 Avicennia marina HOM05D001772 ORTHO05D005958 1.9e-09 66.2 41 73.2
Aqoxy7G00134 Aquilegia oxysepala HOM05D001772 ORTHO05D005958 2.4e-09 65.9 35 82.9
BcaC01g06840 Brassica carinata HOM05D001772 ORTHO05D005958 2.4e-09 65.9 44 70.5
A03p31810 Brassica napus HOM05D001772 ORTHO05D008903 2.4e-09 65.9 44 70.5
C03p38820 Brassica napus HOM05D001772 ORTHO05D008903 2.4e-09 65.9 44 70.5
BolC3t16157H Brassica oleracea HOM05D001772 ORTHO05D008903 2.4e-09 65.9 44 70.5
BraA03t12356Z Brassica rapa HOM05D001772 ORTHO05D008903 2.4e-09 65.9 44 70.5
MD01G1078500 Malus domestica HOM05D001772 ORTHO05D005958 2.4e-09 65.9 44 70.5
Medtr8g027835 Medicago truncatula HOM05D001772 ORTHO05D005958 2.4e-09 65.9 43 72.1
PSO063G7149 Papaver somniferum HOM05D001772 ORTHO05D005958 2.4e-09 65.9 35 82.9
THA.LOC104809830 Tarenaya hassleriana HOM05D001772 ORTHO05D005958 2.4e-09 65.9 44 72.7
Ciclev10020161m.g Citrus clementina HOM05D001772 ORTHO05D005958 3.2e-09 65.5 44 70.5
ECA240G4072 Erigeron canadensis HOM05D001772 ORTHO05D008903 3.2e-09 65.5 35 80.0
Thhalv10028649m.g Eutrema salsugineum HOM05D001772 ORTHO05D005958 3.2e-09 65.5 44 70.5
Gohir.A12G111400 Gossypium hirsutum HOM05D001772 ORTHO05D005958 3.2e-09 65.5 35 80.0
Gorai.008G124200 Gossypium raimondii HOM05D001772 ORTHO05D005958 3.2e-09 65.5 35 80.0
HPP92_008635 Vanilla planifolia HOM05D001772 ORTHO05D005958 3.2e-09 65.5 44 72.7
Cc02_g39150 Coffea canephora HOM05D001772 ORTHO05D005958 4.1e-09 65.1 63 54.0
ClCG05G000930 Citrullus lanatus HOM05D001772 ORTHO05D005958 5.4e-09 64.7 43 69.8
Lj9A595G54 Lonicera japonica HOM05D001772 ORTHO05D005958 5.4e-09 64.7 35 80.0
PSO170G2207 Papaver somniferum HOM05D001772 ORTHO05D005958 5.4e-09 64.7 35 80.0
GSVIVG01027075001 Vitis vinifera HOM05D001772 ORTHO05D005958 5.4e-09 64.7 35 77.1
MELO3C006035.2 Cucumis melo HOM05D001772 ORTHO05D005958 7.1e-09 64.3 43 69.8
CsaV3_3G008160 Cucumis sativus L. HOM05D001772 ORTHO05D005958 7.1e-09 64.3 43 69.8
Migut.N01556 Erythranthe guttata HOM05D001772 ORTHO05D005958 7.1e-09 64.3 43 72.1
Manes.01G247500 Manihot esculenta HOM05D001772 ORTHO05D005958 7.1e-09 64.3 44 68.2
TAR374G0181 Trochodendron aralioides HOM05D001772 ORTHO05D005958 7.1e-09 64.3 44 70.5
TAR374G0629 Trochodendron aralioides HOM05D001772 ORTHO05D005958 7.1e-09 64.3 44 70.5
SalBow3G4655 Salvia bowleyana HOM05D001772 ORTHO05D005958 9.2e-09 63.9 44 70.5
Sed0022865 Sechium edule HOM05D001772 ORTHO05D005958 9.2e-09 63.9 43 67.4
Zm00001eb238170 Zea mays HOM05D001772 ORTHO05D005958 1.2e-08 63.5 38 71.1
TAR636G2875 Trochodendron aralioides HOM05D001772 ORTHO05D005958 2.1e-08 62.8 35 77.1
Actinidia28499 Actinidia chinensis HOM05D001772 ORTHO05D005958 2.7e-08 62.4 46 63.0
Sed0001533 Sechium edule HOM05D001772 ORTHO05D005958 2.7e-08 62.4 43 65.1
Sed0025835 Sechium edule HOM05D001772 ORTHO05D005958 2.7e-08 62.4 43 65.1
TAR375G0592 Trochodendron aralioides HOM05D001772 ORTHO05D005958 3.5e-08 62.0 44 68.2
Sed0013783 Sechium edule HOM05D001772 ORTHO05D005958 1.3e-07 60.1 43 62.8
ATR0589G056 Amborella trichopoda HOM05D001772 ORTHO05D005958 3.9e-07 58.5 35 71.4


User provided reference genes

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