Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_05955 Corchorus olitorius HOM05D000665 ORTHO05D003147 9.5e-74 280.0 135 100.0
COL.COLO4_26158 Corchorus olitorius HOM05D004999 ORTHO05D007513 4.9e-22 108.2 53 92.5
Thecc.08G042900 Theobroma cacao HOM05D000665 ORTHO05D003147 1.6e-20 103.2 52 90.4
Duzib116G0030 Durio zibethinus HOM05D000665 ORTHO05D003147 6.0e-20 101.3 52 90.4
Gohir.A05G187000 Gossypium hirsutum HOM05D000665 ORTHO05D003147 3.0e-19 99.0 52 84.6
Gohir.D05G189900 Gossypium hirsutum HOM05D000665 ORTHO05D003147 1.9e-18 96.3 52 82.7
Gorai.009G195200 Gossypium raimondii HOM05D000665 ORTHO05D003147 1.9e-18 96.3 52 82.7
Potri.002G023800 Populus trichocarpa HOM05D000665 ORTHO05D003147 5.6e-18 94.7 51 86.3
Sabra02G0019400 Salix brachista HOM05D000665 ORTHO05D003147 6.2e-17 91.3 51 80.4
FvH4_2g38651 Fragaria vesca HOM05D000665 ORTHO05D003147 1.8e-16 89.7 103 48.5
FAN15G1296 Fragaria x ananassa HOM05D000665 ORTHO05D003147 1.8e-16 89.7 103 48.5
FAN20G1516 Fragaria x ananassa HOM05D000665 ORTHO05D003147 1.8e-16 89.7 103 48.5
QL02p011365 Quercus lobata HOM05D000665 ORTHO05D003147 1.8e-16 89.7 53 77.4
Cpa.g.sc1059.2 Carica papaya HOM05D000665 ORTHO05D003147 2.4e-16 89.4 51 76.5
CARHR069080 Cardamine hirsuta HOM05D000665 ORTHO05D003147 3.1e-16 89.0 68 64.7
RcHm_v2.0_Chr6g0302661 Rosa chinensis HOM05D000665 ORTHO05D003147 3.1e-16 89.0 52 73.1
TWI12G0661 Tripterygium wilfordii HOM05D000665 ORTHO05D003147 4.0e-16 88.6 56 75.0
FAN27G2725 Fragaria x ananassa HOM05D000665 ORTHO05D003147 6.9e-16 87.8 103 47.6
Aa31LG4G5910 Aethionema arabicum HOM05D000665 ORTHO05D003147 1.5e-15 86.7 56 73.2
Prupe.1G367200 Prunus persica HOM05D000665 ORTHO05D003147 1.5e-15 86.7 52 73.1
CANSAT78G2452 Cannabis sativa HOM05D000665 ORTHO05D003147 3.4e-15 85.5 81 54.3
Atru.chr13.313 Acer truncatum HOM05D000665 ORTHO05D003147 9.9e-15 84.0 49 71.4
Cfa013937 Carpinus fangiana HOM05D000665 ORTHO05D003147 9.9e-15 84.0 52 73.1
Haze_22620 Corylus avellana HOM05D000665 ORTHO05D003147 1.7e-14 83.2 52 73.1
Lj5g0011828 Lotus japonicus HOM05D000665 ORTHO05D003147 2.2e-14 82.8 52 73.1
arahy.Tifrunner.gnm1.ann1.61NS0W Arachis hypogaea HOM05D000665 ORTHO05D003147 2.9e-14 82.4 56 69.6
arahy.Tifrunner.gnm1.ann1.LNEK2H Arachis hypogaea HOM05D000665 ORTHO05D003147 2.9e-14 82.4 56 69.6
Ciclev10001935m.g Citrus clementina HOM05D000665 ORTHO05D003147 2.9e-14 82.4 53 67.9
Peaxi162Scf00544g00316 Petunia axillaris HOM05D000665 ORTHO05D003147 4.9e-14 81.6 80 55.0
TWI56G0848 Tripterygium wilfordii HOM05D000665 ORTHO05D003147 4.9e-14 81.6 56 73.2
Manes.18G014700 Manihot esculenta HOM05D000665 ORTHO05D003147 1.4e-13 80.1 52 71.2
Glyma.17G257300 Glycine max HOM05D000665 ORTHO05D003147 1.9e-13 79.7 50 74.0
CAN.G1721.3 Capsicum annuum HOM05D000665 ORTHO05D003147 2.4e-13 79.3 48 72.9
Rhsim06G0022500 Rhododendron simsii HOM05D000665 ORTHO05D003147 2.4e-13 79.3 56 60.7
Solyc08g062420.3 Solanum lycopersicum HOM05D000665 ORTHO05D003147 2.4e-13 79.3 48 72.9
Sopen08g017930 Solanum pennellii HOM05D000665 ORTHO05D003147 2.4e-13 79.3 48 72.9
Phvul.001G007600 Phaseolus vulgaris HOM05D000665 ORTHO05D003147 3.2e-13 79.0 51 72.5
A02p20140 Brassica napus HOM05D000665 ORTHO05D003147 4.2e-13 78.6 46 73.9
BraA02t07049Z Brassica rapa HOM05D000665 ORTHO05D003147 4.2e-13 78.6 46 73.9
CiPaw.07G151500 Carya illinoinensis HOM05D000665 ORTHO05D003147 5.5e-13 78.2 62 59.7
TAR381G0333 Trochodendron aralioides HOM05D000665 ORTHO05D003147 5.5e-13 78.2 53 64.2
BcaB05g24932 Brassica carinata HOM05D000665 ORTHO05D003147 7.1e-13 77.8 56 64.3
Ca_13411_v3 Cicer arietinum L. HOM05D000665 ORTHO05D003147 7.1e-13 77.8 49 73.5
Ca_13420_v3 Cicer arietinum L. HOM05D000665 ORTHO05D003147 7.1e-13 77.8 49 73.5
TPR.G34347 Trifolium pratense HOM05D000665 ORTHO05D003147 9.3e-13 77.4 72 59.7
MD08G1014200 Malus domestica HOM05D000665 ORTHO05D003147 1.2e-12 77.0 48 68.8
VMungo0647G0204 Vigna mungo HOM05D001045 ORTHO05D003147 1.2e-12 77.0 51 70.6
BolC2t09325H Brassica oleracea HOM05D000665 ORTHO05D003147 1.6e-12 76.6 46 73.9
Nitab4.5_0014425g0010 Nicotiana tabacum HOM05D000665 ORTHO05D003147 1.6e-12 76.6 49 69.4
CiPaw.04G149600 Carya illinoinensis HOM05D000665 ORTHO05D003147 2.1e-12 76.3 49 69.4
Nitab4.5_0001936g0100 Nicotiana tabacum HOM05D000665 ORTHO05D003147 3.5e-12 75.5 49 69.4
Psat6g003760 Pisum sativum HOM05D000665 ORTHO05D003147 4.6e-12 75.1 51 70.6
TAR628G0739 Trochodendron aralioides HOM05D000665 ORTHO05D003147 4.6e-12 75.1 59 59.3
BcaC03g15609 Brassica carinata HOM05D000665 ORTHO05D003147 6.0e-12 74.7 46 71.7
Medtr1g024830 Medicago truncatula HOM05D000665 ORTHO05D003147 6.0e-12 74.7 46 76.1
Sp5g30790 Schrenkiella parvula HOM05D000665 ORTHO05D003147 6.0e-12 74.7 51 70.6
vmacro21719 Vaccinium macrocarpon HOM05D000665 ORTHO05D003147 6.0e-12 74.7 57 59.6
arahy.Tifrunner.gnm1.ann1.2612I3 Arachis hypogaea HOM05D000665 ORTHO05D003147 7.9e-12 74.3 85 49.4
C02p33790 Brassica napus HOM05D000665 ORTHO05D003147 1.0e-11 73.9 46 71.7
Thhalv10018949m.g Eutrema salsugineum HOM05D000665 ORTHO05D003147 1.0e-11 73.9 51 68.6
Actinidia16978 Actinidia chinensis HOM05D000665 ORTHO05D003147 3.9e-11 72.0 57 54.4
Actinidia15412 Actinidia chinensis HOM05D000665 ORTHO05D003147 6.7e-11 71.2 57 56.1
MSTRG.25235 Avicennia marina HOM05D000665 ORTHO05D003147 6.7e-11 71.2 48 68.8
EL10Ac4g08226 Beta vulgaris HOM05D000665 ORTHO05D003147 6.7e-11 71.2 40 75.0
Oeu020877.2 Olea europaea HOM05D000665 ORTHO05D003147 8.7e-11 70.9 52 63.5
Lj1g0009979 Lotus japonicus HOM05D000665 ORTHO05D003147 2.5e-10 69.3 41 80.5
MSTRG.25238 Avicennia marina HOM05D000665 ORTHO05D003147 7.4e-10 67.8 48 64.6
PGR102G2628 Punica granatum HOM05D000665 ORTHO05D003147 7.4e-10 67.8 46 63.0
Hma1.2p1_0638F.1_g193770 Hydrangea macrophylla HOM05D000665 ORTHO05D003147 9.6e-10 67.4 47 63.8
THA.LOC104809388 Tarenaya hassleriana HOM05D000665 ORTHO05D003147 9.6e-10 67.4 45 66.7
AUR62036171 Chenopodium quinoa HOM05D000665 ORTHO05D003147 1.3e-09 67.0 47 57.4
DCAR_017475 Daucus carota HOM05D000665 ORTHO05D003147 1.6e-09 66.6 43 67.4
AUR62019459 Chenopodium quinoa HOM05D000665 ORTHO05D003147 2.1e-09 66.2 47 57.4
Cc10_g01810 Coffea canephora HOM05D000665 ORTHO05D003147 3.7e-09 65.5 45 66.7
Nn6g32360 Nelumbo nucifera HOM05D000665 ORTHO05D003147 4.8e-09 65.1 37 67.6
Oeu054702.2 Olea europaea HOM05D000665 ORTHO05D003147 6.2e-09 64.7 74 48.6
Dinv03259 Davidia involucrata HOM05D000665 ORTHO05D003147 8.2e-09 64.3 52 59.6
Hund05198 Selenicereus undatus HOM05D000665 ORTHO05D003147 8.2e-09 64.3 42 66.7
SGA_v2.0_scaffold11G05910 Striga asiatica HOM05D001280 ORTHO05D003147 1.1e-08 63.9 46 63.0
MSTRG.1202 Avicennia marina HOM05D000665 ORTHO05D003147 1.8e-08 63.2 48 60.4
Manes.05G148700 Manihot esculenta HOM05D000665 ORTHO05D003147 5.3e-08 61.6 40 80.0
Migut.C00808 Erythranthe guttata HOM05D000665 ORTHO05D003147 1.5e-07 60.1 42 69.0
BcaB04g18365 Brassica carinata HOM05D000665 ORTHO05D003147 4.9e-06 55.1 47 48.9


User provided reference genes

Program Settings