Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_04990 Corchorus olitorius HOM05D006264 ORTHO05D007739 1.8e-195 685.6 328 100.0
Thecc.08G126800 Theobroma cacao HOM05D006264 ORTHO05D007739 3.7e-180 634.8 328 91.2
Gohir.D06G045800 Gossypium hirsutum HOM05D006264 ORTHO05D007739 1.2e-170 603.2 317 90.2
Gorai.010G051000 Gossypium raimondii HOM05D006264 ORTHO05D007739 1.2e-170 603.2 317 90.2
Ciclev10001823m.g Citrus clementina HOM05D006264 ORTHO05D007739 1.7e-169 599.4 328 85.1
VMungo1309G2910 Vigna mungo HOM05D006264 ORTHO05D007739 3.8e-169 598.2 326 85.9
Phvul.009G127300 Phaseolus vulgaris HOM05D006264 ORTHO05D007739 6.5e-169 597.4 326 85.9
Glyma.06G115200 Glycine max HOM05D006264 ORTHO05D007739 1.9e-168 595.9 326 85.6
Lj1g0001411 Lotus japonicus HOM05D006264 ORTHO05D007739 2.5e-168 595.5 326 85.0
arahy.Tifrunner.gnm1.ann1.YYE7NP Arachis hypogaea HOM05D006264 ORTHO05D007739 4.2e-168 594.7 327 84.1
arahy.Tifrunner.gnm1.ann1.W8H4W4 Arachis hypogaea HOM05D006264 ORTHO05D007739 2.1e-167 592.4 327 83.8
CsaV3_4G028200 Cucumis sativus L. HOM05D006264 ORTHO05D007739 3.6e-167 591.7 328 83.5
Medtr3g088580 Medicago truncatula HOM05D006264 ORTHO05D007739 3.6e-167 591.7 326 84.4
Nn1g08814 Nelumbo nucifera HOM05D006264 ORTHO05D007739 4.7e-167 591.3 328 82.6
MELO3C010482.2 Cucumis melo HOM05D006264 ORTHO05D007739 6.1e-167 590.9 328 83.5
Glyma.04G247500 Glycine max HOM05D006264 ORTHO05D007739 2.3e-166 589.0 327 84.4
Prupe.1G494700 Prunus persica HOM05D006264 ORTHO05D007739 3.0e-166 588.6 328 83.8
Lalb_Chr11g0066051 Lupinus albus HOM05D006264 ORTHO05D007739 3.9e-166 588.2 326 83.7
MD15G1347000 Malus domestica HOM05D006264 ORTHO05D007739 1.1e-165 586.6 328 83.8
QL09p034323 Quercus lobata HOM05D006264 ORTHO05D007739 1.1e-165 586.6 327 83.5
Ca_27657_v3 Cicer arietinum L. HOM05D006264 ORTHO05D007739 2.0e-165 585.9 327 83.8
TAR381G1225 Trochodendron aralioides HOM05D006264 ORTHO05D007739 2.6e-165 585.5 328 82.0
Sed0004807 Sechium edule HOM05D006264 ORTHO05D007739 1.3e-164 583.2 328 82.6
Lalb_Chr08g0241301 Lupinus albus HOM05D006264 ORTHO05D007739 4.8e-164 581.3 328 81.7
TPR.G13464 Trifolium pratense HOM05D006264 ORTHO05D007739 1.8e-163 579.3 327 83.2
CSS0035031 Camellia sinensis var. sinensis HOM05D006264 ORTHO05D007739 2.4e-163 578.9 328 81.4
PGR044G1646 Punica granatum HOM05D006264 ORTHO05D007739 5.3e-163 577.8 321 84.4
FAN15G0088 Fragaria x ananassa HOM05D006264 ORTHO05D007739 1.2e-162 576.6 329 81.5
RcHm_v2.0_Chr6g0295971 Rosa chinensis HOM05D006264 ORTHO05D007739 1.6e-162 576.2 328 81.4
FAN24G2929 Fragaria x ananassa HOM05D006264 ORTHO05D007739 2.0e-162 575.9 327 81.7
TAR625G1219 Trochodendron aralioides HOM05D006264 ORTHO05D007739 2.0e-162 575.9 328 79.6
Actinidia29470 Actinidia chinensis HOM05D006264 ORTHO05D007739 5.9e-162 574.3 328 79.6
Eucgr.F04347 Eucalyptus grandis HOM05D006264 ORTHO05D007739 5.9e-162 574.3 328 81.7
FAN20G0424 Fragaria x ananassa HOM05D006264 ORTHO05D007739 1.0e-161 573.5 329 81.2
Lj4C628G13 Lonicera japonica HOM05D006264 ORTHO05D007739 1.3e-161 573.2 329 80.5
TWI60G1034 Tripterygium wilfordii HOM05D006264 ORTHO05D007739 6.5e-161 570.9 327 81.7
MSTRG.1441 Avicennia marina HOM05D006264 ORTHO05D007739 5.5e-160 567.8 328 79.9
Dinv27304 Davidia involucrata HOM05D006264 ORTHO05D007739 1.2e-159 566.6 328 80.2
THA.LOC104810199 Tarenaya hassleriana HOM05D006264 ORTHO05D007739 1.6e-159 566.2 329 81.2
CANSAT11G2315 Cannabis sativa HOM05D006264 ORTHO05D007739 2.1e-159 565.8 328 81.7
Oeu040415.1 Olea europaea HOM05D006264 ORTHO05D007739 2.1e-159 565.8 328 80.5
Duzib093G0816 Durio zibethinus HOM05D006264 ORTHO05D007739 1.0e-158 563.5 328 84.1
Sc02g0005000 Simmondsia chinensis HOM05D006264 ORTHO05D007739 1.8e-158 562.8 328 78.0
Hund17298 Selenicereus undatus HOM05D006264 ORTHO05D007739 5.2e-158 561.2 326 80.7
arahy.Tifrunner.gnm1.ann1.9W7Z3M Arachis hypogaea HOM05D006264 ORTHO05D007739 1.1e-157 560.1 335 78.8
AT1G21760 Arabidopsis thaliana HOM05D006264 ORTHO05D007739 2.6e-157 558.9 330 79.4
CARHR022150 Cardamine hirsuta HOM05D006264 ORTHO05D007739 1.3e-156 556.6 330 79.4
Haze_00430 Corylus avellana HOM05D006264 ORTHO05D007739 2.2e-156 555.8 341 79.8
CiPaw.05G220800 Carya illinoinensis HOM05D006264 ORTHO05D007739 2.8e-156 555.4 328 80.2
ClCG11G015780 Citrullus lanatus HOM05D006264 ORTHO05D007739 4.8e-156 554.7 308 82.8
Aa31LG7G5740 Aethionema arabicum HOM05D006264 ORTHO05D007739 6.3e-156 554.3 330 79.7
Cc10_g12020 Coffea canephora HOM05D006264 ORTHO05D007739 6.3e-156 554.3 328 77.1
FvH4_2g27090 Fragaria vesca HOM05D006264 ORTHO05D007739 8.2e-156 553.9 325 78.5
Sp1g19320 Schrenkiella parvula HOM05D006264 ORTHO05D007739 1.8e-155 552.7 330 78.8
BcaB07g32175 Brassica carinata HOM05D006264 ORTHO05D007739 4.1e-155 551.6 330 78.8
Nitab4.5_0001996g0020 Nicotiana tabacum HOM05D006264 ORTHO05D007739 3.5e-154 548.5 325 76.9
BcaC05g26098 Brassica carinata HOM05D006264 ORTHO05D007739 7.7e-154 547.4 330 78.5
PGSC0003DMG400000884 Solanum tuberosum HOM05D006264 ORTHO05D007739 2.9e-153 545.4 328 76.5
CAN.G2.26 Capsicum annuum HOM05D006264 ORTHO05D007739 5.0e-153 544.7 325 76.6
A06p17870 Brassica napus HOM05D006264 ORTHO05D007739 8.5e-153 543.9 346 75.4
Solyc11g012830.3 Solanum lycopersicum HOM05D006264 ORTHO05D007739 1.1e-152 543.5 328 75.6
BraA06t24877Z Brassica rapa HOM05D006264 ORTHO05D007739 2.5e-152 542.3 341 75.7
Carub.0001s2122 Capsella rubella HOM05D006264 ORTHO05D007739 1.2e-151 540.0 330 77.3
BolC5t30776H Brassica oleracea HOM05D006264 ORTHO05D007739 1.6e-151 539.7 338 76.0
EL10Ac1g01023 Beta vulgaris HOM05D006264 ORTHO05D007739 6.1e-151 537.7 328 75.9
Migut.C01127 Erythranthe guttata HOM05D006264 ORTHO05D007739 5.2e-150 534.6 328 76.8
Aqoxy6G00234 Aquilegia oxysepala HOM05D006264 ORTHO05D007739 8.8e-150 533.9 318 76.7
vmacro00839 Vaccinium macrocarpon HOM05D006264 ORTHO05D007739 1.2e-149 533.5 328 74.7
HanXRQChr05g0151071 Helianthus annuus HOM05D006264 ORTHO05D007739 3.4e-149 531.9 328 73.2
Rhsim11G0069200 Rhododendron simsii HOM05D006264 ORTHO05D007739 3.4e-149 531.9 326 74.8
MBI16_g07653_MAGBIO Magnolia biondii HOM05D006264 ORTHO05D007739 5.7e-149 531.2 325 75.7
Manes.02G164400 Manihot esculenta HOM05D006264 ORTHO05D007739 7.5e-149 530.8 328 75.3
AUR62019071 Chenopodium quinoa HOM05D006264 ORTHO05D007739 4.8e-148 528.1 326 75.2
AUR62014328 Chenopodium quinoa HOM05D006264 ORTHO05D007739 8.3e-148 527.3 326 74.8
SGA_v2.0_scaffold24G10459 Striga asiatica HOM05D006264 ORTHO05D007739 2.4e-147 525.8 318 77.0
C05p20770 Brassica napus HOM05D006264 ORTHO05D007739 3.5e-146 521.9 323 75.9
Peaxi162Scf00914g00315 Petunia axillaris HOM05D006264 ORTHO05D007739 5.5e-144 514.6 297 79.1
PSO170G1538 Papaver somniferum HOM05D006264 ORTHO05D007739 9.4e-144 513.8 328 71.6
Potri.005G178600 Populus trichocarpa HOM05D006264 ORTHO05D007739 2.1e-143 512.7 328 75.0
PSO528G0109 Papaver somniferum HOM05D006264 ORTHO05D007739 6.1e-143 511.1 328 71.0
PSO063G0125 Papaver somniferum HOM05D006264 ORTHO05D007739 1.5e-141 506.5 328 70.4
Potri.002G082500 Populus trichocarpa HOM05D006264 ORTHO05D007739 1.3e-140 503.4 328 72.3
CDE02G1850 Ceratophyllum demersum HOM05D006264 ORTHO05D007739 4.9e-140 501.5 328 68.6
ATR0584G291 Amborella trichopoda HOM05D006264 ORTHO05D007739 5.4e-139 498.0 315 72.1
Lsat_1_v5_gn_6_112861 Lactuca sativa HOM05D006264 ORTHO05D007739 6.6e-137 491.1 326 69.9
Nitab4.5_0001803g0010 Nicotiana tabacum HOM05D006264 ORTHO05D007739 4.3e-136 488.4 312 73.1
GSVIVG01008855001 Vitis vinifera HOM05D006264 ORTHO05D007739 1.8e-134 483.0 328 72.3
HPP92_004401 Vanilla planifolia HOM05D006264 ORTHO05D007739 2.4e-131 472.6 325 67.1
HPP92_027807 Vanilla planifolia HOM05D006264 ORTHO05D007739 4.1e-131 471.9 325 66.8
QL09p034368 Quercus lobata HOM05D006264 ORTHO05D007739 7.0e-131 471.1 253 85.4
THA.LOC104801868 Tarenaya hassleriana HOM05D006264 ORTHO05D007739 3.6e-127 458.8 255 83.5
unitig_748.g7689 Utricularia gibba HOM05D006264 ORTHO05D007739 1.5e-125 453.4 317 68.1
AL1G34960 Arabidopsis lyrata HOM05D006264 ORTHO05D007739 1.3e-124 450.3 254 83.1
Thhalv10008543m.g Eutrema salsugineum HOM05D006264 ORTHO05D007739 3.2e-123 445.7 256 81.2
Zm00001eb422580 Zea mays HOM05D006264 ORTHO05D007739 4.1e-123 445.3 328 62.2
Gohir.A06G045300 Gossypium hirsutum HOM05D006264 ORTHO05D007739 5.4e-123 444.9 241 86.3
Pp3c3_38060 Physcomitrium patens HOM05D006264 ORTHO05D007739 1.7e-121 439.9 306 66.3
SMO347G0097 Selaginella moellendorffii HOM05D006264 ORTHO05D007739 2.3e-121 439.5 309 65.0
Sabra02G0064700 Salix brachista HOM05D006264 ORTHO05D007739 6.6e-121 438.0 328 65.5
Mapoly0151s0012 Marchantia polymorpha HOM05D006264 ORTHO05D007739 2.7e-114 416.0 317 59.9
DCAR_028205 Daucus carota HOM05D006264 ORTHO05D007739 1.1e-112 410.6 254 74.8
ECA246G2185 Erigeron canadensis HOM05D006264 ORTHO05D007739 1.9e-112 409.8 268 69.0
AagrBONN_evm.TU.Sc2ySwM_117.473 Anthoceros agrestis HOM05D006264 ORTHO05D007739 2.1e-111 406.4 309 59.5
Atru.chr13.1491 Acer truncatum HOM05D006264 ORTHO05D007739 2.3e-105 386.3 220 84.5
Sopen11g007570 Solanum pennellii HOM05D006264 ORTHO05D007739 1.6e-95 353.6 198 82.3
CBR_g39544 Chara braunii HOM05D006264 ORTHO05D007739 2.4e-91 339.7 312 53.2
Psat5g086280 Pisum sativum HOM05D006264 ORTHO05D007739 7.4e-80 301.6 166 80.7
Psat5g086240 Pisum sativum HOM05D006264 ORTHO05D007739 4.8e-63 245.7 132 87.9
Cpa.g.c35582 Carica papaya HOM05D006264 ORTHO05D007739 8.2e-63 245.0 144 81.2
Os04g0431200 Oryza sativa ssp. japonica HOM05D006264 ORTHO05D007739 4.4e-48 196.1 142 59.2
MCO07G330 Micromonas commoda HOM05D006264 ORTHO05D007739 1.1e-46 191.4 312 36.9
PRCOL_00004228 Prasinoderma coloniale HOM05D006264 ORTHO05D007739 1.8e-46 190.7 281 36.3
Cpa.g.sc418.8 Carica papaya HOM05D006264 ORTHO05D007739 3.1e-46 189.9 115 77.4
Cre06.g254450 Chlamydomonas reinhardtii HOM05D006264 ORTHO05D007739 3.7e-39 166.4 303 34.3
SEGI_39749 Sequoiadendron giganteum HOM05D006264 ORTHO05D007739 7.5e-32 142.1 111 68.5
arahy.Tifrunner.gnm1.ann1.XAL0CN Arachis hypogaea HOM05D003584 ORTHO05D004148 1.7e-31 141.0 109 58.7
Medtr4g068980 Medicago truncatula HOM05D006264 ORTHO05D007739 3.7e-31 139.8 82 78.0
Zm00001eb082740 Zea mays HOM05D006264 ORTHO05D007739 7.0e-30 135.6 133 55.6
Cpa.g.c45459 Carica papaya HOM05D006264 ORTHO05D007739 2.7e-29 133.7 78 82.1
SEGI_38549 Sequoiadendron giganteum HOM05D006264 ORTHO05D007739 2.1e-26 124.0 68 75.0
Atru.chr13.1492 Acer truncatum HOM05D006264 ORTHO05D007739 6.3e-23 112.5 72 73.6
Migut.B01582 Erythranthe guttata HOM05D006264 ORTHO05D007739 3.8e-20 103.2 58 79.3
PGSC0003DMG400006698 Solanum tuberosum HOM05D006264 ORTHO05D007739 8.6e-12 75.5 69 50.7
Rhsim11G0069000 Rhododendron simsii HOM05D006264 ORTHO05D007739 4.0e-09 66.6 61 55.7
Actinidia03465 Actinidia chinensis HOM05D006264 ORTHO05D007739 2.9e-07 60.5 36 69.4
Rhsim11G0068700 Rhododendron simsii HOM05D006264 ORTHO05D007739 4.1e-06 56.6 39 71.8
SEGI_08627 Sequoiadendron giganteum HOM05D006264 ORTHO05D007739 7.0e-06 55.8 39 61.5


User provided reference genes

Program Settings