Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_04619 Corchorus olitorius HOM05D004071 ORTHO05D004501 4.1e-190 667.9 346 100.0
Thecc.04G143800 Theobroma cacao HOM05D004071 ORTHO05D004501 5.6e-171 604.4 346 89.0
Gohir.D07G183200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 4.3e-163 578.2 346 84.4
Gorai.001G203600 Gossypium raimondii HOM05D004071 ORTHO05D004501 1.1e-161 573.5 346 83.8
Atru.chr10.1868 Acer truncatum HOM05D004071 ORTHO05D004501 5.8e-160 567.8 346 78.9
Duzib268G0320 Durio zibethinus HOM05D004071 ORTHO05D004501 1.9e-158 562.8 346 82.9
Gohir.A07G176100 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.4e-158 562.4 346 82.7
Gorai.001G082400 Gossypium raimondii HOM05D004071 ORTHO05D004501 2.1e-157 559.3 341 81.2
Gohir.A07G073300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.5e-157 558.5 341 80.1
Cfa007968 Carpinus fangiana HOM05D004071 ORTHO05D004501 1.9e-155 552.7 347 79.5
Ciclev10012116m.g Citrus clementina HOM05D004071 ORTHO05D004501 2.5e-155 552.4 346 76.6
Gohir.D07G078000 Gossypium hirsutum HOM05D004071 ORTHO05D004501 4.3e-155 551.6 357 77.6
Potri.004G104900 Populus trichocarpa HOM05D004071 ORTHO05D004501 9.6e-155 550.4 346 77.7
MD17G1072900 Malus domestica HOM05D004071 ORTHO05D004501 4.8e-154 548.1 346 76.6
Prupe.3G241500 Prunus persica HOM05D004071 ORTHO05D004501 6.2e-154 547.7 346 78.3
CiPaw.04G003700 Carya illinoinensis HOM05D004071 ORTHO05D004501 4.0e-153 545.0 348 77.9
CiPaw.03G006000 Carya illinoinensis HOM05D004071 ORTHO05D004501 4.5e-152 541.6 347 78.7
Psat1g062200 Pisum sativum HOM05D004071 ORTHO05D004501 1.7e-151 539.7 348 75.9
Manes.02G065500 Manihot esculenta HOM05D004071 ORTHO05D004501 4.9e-151 538.1 348 78.4
Cpa.g.sc179.42 Carica papaya HOM05D004071 ORTHO05D004501 3.2e-150 535.4 346 77.7
TPR.G9685 Trifolium pratense HOM05D004071 ORTHO05D004501 5.5e-150 534.6 347 73.5
Hma1.2p1_0550F.1_g177140 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 9.3e-150 533.9 346 76.3
Lj2g0019369 Lotus japonicus HOM05D004071 ORTHO05D004501 4.6e-149 531.6 347 75.5
Gohir.D08G047900 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.0e-148 530.4 346 79.8
CSS0015718 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 1.3e-148 530.0 346 75.1
Cc07_g04980 Coffea canephora HOM05D004071 ORTHO05D004501 2.3e-148 529.3 348 78.7
Gohir.A08G037600 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.3e-148 529.3 346 80.6
Gorai.004G047400 Gossypium raimondii HOM05D004071 ORTHO05D004501 2.3e-148 529.3 346 80.1
CsaV3_5G039030 Cucumis sativus L. HOM05D004071 ORTHO05D004501 8.7e-148 527.3 346 76.0
MD09G1082200 Malus domestica HOM05D004071 ORTHO05D004501 8.7e-148 527.3 346 75.1
TAR622G0876 Trochodendron aralioides HOM05D004071 ORTHO05D004501 8.7e-148 527.3 338 76.6
MELO3C022067.2 Cucumis melo HOM05D004071 ORTHO05D004501 4.3e-147 525.0 347 75.5
CANSAT64G0921 Cannabis sativa HOM05D004071 ORTHO05D004501 7.4e-147 524.2 349 75.1
arahy.Tifrunner.gnm1.ann1.85GVTZ Arachis hypogaea HOM05D004071 ORTHO05D004501 8.2e-146 520.8 346 72.5
Glyma.13G047900 Glycine max HOM05D004071 ORTHO05D004501 8.2e-146 520.8 347 72.3
Sed0017773 Sechium edule HOM05D004071 ORTHO05D004501 8.2e-146 520.8 346 75.7
CAN.G153.14 Capsicum annuum HOM05D004071 ORTHO05D004501 1.4e-145 520.0 350 75.7
PGSC0003DMG400018768 Solanum tuberosum HOM05D004071 ORTHO05D004501 4.0e-145 518.5 349 76.2
Medtr6g016780 Medicago truncatula HOM05D004071 ORTHO05D004501 5.3e-145 518.1 349 74.2
CARHR076390 Cardamine hirsuta HOM05D004071 ORTHO05D004501 2.0e-144 516.2 346 75.1
ClCG11G005270 Citrullus lanatus HOM05D004071 ORTHO05D004501 1.0e-143 513.8 346 74.3
FAN09G0395 Fragaria x ananassa HOM05D000085 ORTHO05D004501 1.7e-143 513.1 346 73.1
THA.LOC104827150 Tarenaya hassleriana HOM05D004071 ORTHO05D004501 1.7e-143 513.1 346 75.7
Dinv34868 Davidia involucrata HOM05D004071 ORTHO05D004501 2.2e-143 512.7 346 78.9
Oeu032872.2 Olea europaea HOM05D004071 ORTHO05D004501 2.2e-143 512.7 347 72.6
Oeu049330.1 Olea europaea HOM05D004071 ORTHO05D004501 8.4e-143 510.8 346 71.1
Ca_14084_v3 Cicer arietinum L. HOM05D004071 ORTHO05D004501 1.1e-142 510.4 348 71.0
Duzib133G0960 Durio zibethinus HOM05D004071 ORTHO05D004501 7.1e-142 507.7 346 76.6
Phvul.004G073300 Phaseolus vulgaris HOM05D004071 ORTHO05D004501 9.3e-142 507.3 347 71.2
Lsat_1_v5_gn_2_86560 Lactuca sativa HOM05D004071 ORTHO05D004501 7.9e-141 504.2 346 73.7
Potri.017G110600 Populus trichocarpa HOM05D004071 ORTHO05D004501 1.8e-140 503.1 346 75.4
Lsat_1_v5_gn_4_175840 Lactuca sativa HOM05D004071 ORTHO05D004501 8.7e-140 500.7 348 76.4
Oeu025120.1 Olea europaea HOM05D004071 ORTHO05D004501 2.5e-139 499.2 345 71.0
DCAR_007521 Daucus carota HOM05D000912 ORTHO05D004501 3.3e-139 498.8 343 68.2
Migut.K00863 Erythranthe guttata HOM05D004071 ORTHO05D004501 3.3e-139 498.8 341 71.3
MSTRG.23829 Avicennia marina HOM05D004071 ORTHO05D004501 4.3e-139 498.4 347 72.6
FvH4_6g45520 Fragaria vesca HOM05D004071 ORTHO05D004501 4.3e-139 498.4 346 73.7
Peaxi162Scf01056g00238 Petunia axillaris HOM05D004071 ORTHO05D004501 7.4e-139 497.7 347 73.5
Solyc03g045090.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 9.7e-139 497.3 362 69.6
SGA_v2.0_scaffold204G41658 Striga asiatica HOM05D004071 ORTHO05D004501 1.3e-138 496.9 343 72.6
GSVIVG01036463001 Vitis vinifera HOM05D004071 ORTHO05D004501 1.3e-138 496.9 346 75.1
TWI74G0934 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 2.2e-138 496.1 346 76.6
SalBow1G4702 Salvia bowleyana HOM05D004071 ORTHO05D004501 3.7e-138 495.4 349 72.2
RcHm_v2.0_Chr2g0163461 Rosa chinensis HOM05D004071 ORTHO05D004501 3.1e-137 492.3 348 73.9
SalBow1G4945 Salvia bowleyana HOM05D004071 ORTHO05D004501 3.1e-137 492.3 349 71.9
Hund13742 Selenicereus undatus HOM05D004071 ORTHO05D004501 3.1e-137 492.3 344 69.2
Actinidia26308 Actinidia chinensis HOM05D004071 ORTHO05D004501 4.1e-137 491.9 346 75.1
Sopen03g009550 Solanum pennellii HOM05D004071 ORTHO05D004501 5.3e-137 491.5 348 72.4
Sabra04G0076900 Salix brachista HOM05D004071 ORTHO05D004501 9.0e-137 490.7 446 59.6
FAN05G3345 Fragaria x ananassa HOM05D004071 ORTHO05D004501 1.2e-136 490.3 346 72.8
Nn3g17651 Nelumbo nucifera HOM05D004071 ORTHO05D004501 1.2e-136 490.3 341 71.3
HanXRQChr09g0263441 Helianthus annuus HOM05D004071 ORTHO05D004501 1.5e-136 490.0 341 74.8
PGR042G1023 Punica granatum HOM05D004071 ORTHO05D004501 1.5e-136 490.0 346 71.7
ECA232G0981 Erigeron canadensis HOM05D004071 ORTHO05D004501 4.5e-136 488.4 347 74.6
FAN14G5468 Fragaria x ananassa HOM05D000085 ORTHO05D004501 4.5e-136 488.4 345 72.5
Aqoxy3G00414 Aquilegia oxysepala HOM05D004071 ORTHO05D004501 5.9e-136 488.0 346 70.5
FAN02G1076 Fragaria x ananassa HOM05D000085 ORTHO05D004501 1.3e-135 486.9 345 72.2
TAR629G1013 Trochodendron aralioides HOM05D004071 ORTHO05D004501 2.9e-135 485.7 341 73.3
Lj4A130T17 Lonicera japonica HOM05D004071 ORTHO05D004501 8.5e-135 484.2 348 73.3
MBI16_g36053_MAGBIO Magnolia biondii HOM05D004071 ORTHO05D004501 1.1e-134 483.8 367 67.0
VMungo0464G1781 Vigna mungo HOM05D004071 ORTHO05D004501 1.1e-134 483.8 347 72.3
arahy.Tifrunner.gnm1.ann1.UUQR92 Arachis hypogaea HOM05D004071 ORTHO05D004501 3.2e-134 482.3 341 71.8
arahy.Tifrunner.gnm1.ann1.SG5ZZ4 Arachis hypogaea HOM05D004071 ORTHO05D004501 7.2e-134 481.1 341 71.8
EL10Ac2g04623 Beta vulgaris HOM05D004071 ORTHO05D004501 1.2e-133 480.3 347 69.2
PSO782G5396 Papaver somniferum HOM05D004071 ORTHO05D004501 6.1e-133 478.0 344 71.5
TWI77G0983 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 7.9e-133 477.6 346 70.5
HanXRQChr07g0200191 Helianthus annuus HOM05D004071 ORTHO05D004501 1.8e-132 476.5 346 71.4
PSO063G1546 Papaver somniferum HOM05D004071 ORTHO05D004501 3.9e-132 475.3 341 71.8
Rhsim08G0080100 Rhododendron simsii HOM05D004071 ORTHO05D004501 2.5e-131 472.6 345 69.6
Actinidia36304 Actinidia chinensis HOM05D004071 ORTHO05D004501 3.3e-131 472.2 346 68.5
Carub.0003s0151 Capsella rubella HOM05D004071 ORTHO05D004501 3.3e-131 472.2 349 69.6
Ah.16g102220 Amaranthus hybridus HOM05D004071 ORTHO05D004501 1.3e-130 470.3 352 69.6
Migut.H00537 Erythranthe guttata HOM05D004071 ORTHO05D004501 1.7e-130 469.9 347 68.6
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 2.8e-130 469.2 350 67.1
AT3G02420 Arabidopsis thaliana HOM05D004071 ORTHO05D004501 4.8e-130 468.4 349 69.9
Sed0022702 Sechium edule HOM05D004071 ORTHO05D004501 8.2e-130 467.6 327 68.2
Sp3g01460 Schrenkiella parvula HOM05D004071 ORTHO05D004501 4.1e-129 465.3 346 67.1
Rhsim10G0064500 Rhododendron simsii HOM05D004071 ORTHO05D004501 1.2e-128 463.8 342 66.4
BcaB04g21412 Brassica carinata HOM05D004071 ORTHO05D004501 4.5e-128 461.8 346 67.6
Thhalv10021061m.g Eutrema salsugineum HOM05D004071 ORTHO05D004501 1.0e-127 460.7 347 69.7
Hma1.2p1_0136F.1_g061955 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 2.2e-127 459.5 307 73.3
PGSC0003DMG400010091 Solanum tuberosum HOM05D004071 ORTHO05D004501 5.0e-127 458.4 348 69.5
BcaC05g30354 Brassica carinata HOM05D004071 ORTHO05D004501 4.2e-126 455.3 347 64.6
CDE08G1388 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 5.5e-126 454.9 342 67.5
Lalb_Chr17g0336551 Lupinus albus HOM05D004071 ORTHO05D004501 7.2e-126 454.5 341 68.0
Hund16109 Selenicereus undatus HOM05D004071 ORTHO05D004501 7.2e-126 454.5 351 69.2
AUR62008952 Chenopodium quinoa HOM05D004071 ORTHO05D004501 3.6e-125 452.2 348 64.7
BraA05t23141Z Brassica rapa HOM05D004071 ORTHO05D004501 7.9e-125 451.1 348 64.7
Zm00001eb161490 Zea mays HOM05D004071 ORTHO05D004501 1.5e-123 446.8 352 62.8
Nn4g23653 Nelumbo nucifera HOM05D004071 ORTHO05D004501 4.4e-123 445.3 305 76.4
Os01g0604700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 4.8e-122 441.8 342 62.3
Aa31LG5G12930 Aethionema arabicum HOM05D004071 ORTHO05D004501 1.8e-121 439.9 349 66.5
HPP92_011599 Vanilla planifolia HOM05D004071 ORTHO05D004501 1.8e-121 439.9 340 62.4
BcaC09g47699 Brassica carinata HOM05D004071 ORTHO05D004501 3.1e-121 439.1 346 62.7
ClCG05G012000 Citrullus lanatus HOM05D004071 ORTHO05D004501 4.1e-121 438.7 346 61.8
Nitab4.5_0004420g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 6.9e-121 438.0 351 68.1
PGR004G2426 Punica granatum HOM05D004071 ORTHO05D004501 1.2e-120 437.2 292 76.4
vmacro18101 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 2.2e-119 433.0 346 64.5
AUR62014550 Chenopodium quinoa HOM05D004071 ORTHO05D004501 2.9e-119 432.6 362 61.6
CSS0021599 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 2.1e-117 426.4 285 75.4
Sed0014814 Sechium edule HOM05D004071 ORTHO05D004501 1.4e-116 423.7 347 59.9
unitig_62.g23397 Utricularia gibba HOM05D004071 ORTHO05D004501 1.1e-115 420.6 349 63.3
CDE06G1497 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 3.3e-115 419.1 342 63.5
PSO017G6828 Papaver somniferum HOM05D004071 ORTHO05D004501 1.3e-114 417.2 351 57.8
HPP92_003788 Vanilla planifolia HOM05D004071 ORTHO05D004501 2.4e-113 412.9 340 59.1
PSO478G0222 Papaver somniferum HOM05D004071 ORTHO05D004501 3.1e-113 412.5 351 57.0
Glyma.19G043700 Glycine max HOM05D004071 ORTHO05D004501 4.1e-113 412.1 291 74.9
Os05g0589000 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 3.5e-112 409.1 339 58.7
SEGI_38032 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 1.6e-109 400.2 337 59.9
TAR371G1199 Trochodendron aralioides HOM05D004071 ORTHO05D004501 1.6e-109 400.2 297 68.4
Zm00001eb297500 Zea mays HOM05D004071 ORTHO05D004501 2.7e-109 399.4 346 57.8
vmacro05581 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 4.7e-109 398.7 431 55.2
unitig_32.g10761 Utricularia gibba HOM05D004071 ORTHO05D004501 5.2e-108 395.2 343 60.1
AL3G11710 Arabidopsis lyrata HOM05D004071 ORTHO05D004501 4.8e-106 388.7 300 65.3
Nitab4.5_0009272g0060 Nicotiana tabacum HOM05D004071 ORTHO05D004501 3.5e-104 382.5 359 61.0
BolC5t35082H Brassica oleracea HOM05D004071 ORTHO05D007018 5.7e-99 365.2 322 59.6
Eucgr.I02122 Eucalyptus grandis HOM05D004071 ORTHO05D004501 1.0e-95 354.4 251 70.1
QL02p053393 Quercus lobata HOM05D004071 ORTHO05D004501 1.9e-94 350.1 246 74.8
Peaxi162Scf00479g00310 Petunia axillaris HOM05D004071 ORTHO05D004501 2.5e-94 349.7 302 65.9
Gohir.A13G091200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 4.2e-94 349.0 240 75.8
arahy.Tifrunner.gnm1.ann1.2VHL38 Arachis hypogaea HOM05D004071 ORTHO05D004501 2.1e-93 346.7 244 69.7
C09p75710 Brassica napus HOM05D002308 ORTHO05D002535 7.5e-91 338.2 290 59.7
Nitab4.5_0000612g0160 Nicotiana tabacum HOM05D004071 ORTHO05D004501 3.5e-88 329.3 346 54.0
Sc10g0001400 Simmondsia chinensis HOM05D004071 ORTHO05D004501 3.5e-88 329.3 243 67.1
A05p45210 Brassica napus HOM05D002308 ORTHO05D007018 1.3e-87 327.4 285 59.6
ATR0730G004 Amborella trichopoda HOM05D004071 ORTHO05D004501 1.9e-86 323.6 278 62.2
AagrBONN_evm.TU.Sc2ySwM_117.1813 Anthoceros agrestis HOM05D004071 ORTHO05D004501 3.3e-86 322.8 340 47.1
Lj7A9T84 Lonicera japonica HOM05D004071 ORTHO05D004501 4.0e-84 315.8 224 71.9
Mapoly0013s0171 Marchantia polymorpha HOM05D004071 ORTHO05D004501 1.5e-83 313.9 341 45.7
Dinv33918 Davidia involucrata HOM05D004071 ORTHO05D004501 1.7e-82 310.5 187 80.2
SMO164G0101 Selaginella moellendorffii HOM05D004071 ORTHO05D004501 3.2e-81 306.2 340 47.1
BraSC141t45626Z Brassica rapa HOM05D004071 ORTHO05D004501 2.5e-78 296.6 244 61.5
DCAR_010977 Daucus carota HOM05D004071 ORTHO05D004501 4.7e-77 292.4 338 50.0
BNapus_Darmor_BZH_scaffold_208p00070 Brassica napus HOM05D004071 ORTHO05D004501 5.2e-76 288.9 244 65.6
Zm00001eb158750 Zea mays HOM05D004071 ORTHO05D004501 3.4e-75 286.2 255 55.3
BolC1t05906H Brassica oleracea HOM05D004071 ORTHO05D004501 8.3e-74 281.6 245 58.0
Pp3c7_9290 Physcomitrium patens HOM05D004071 ORTHO05D004501 4.1e-73 279.3 340 41.8
Os01g0641700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 9.2e-73 278.1 256 53.9
TPR.G28780 Trifolium pratense HOM05D004071 ORTHO05D004501 6.8e-68 261.9 145 82.8
CDE05G2628 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 7.1e-65 251.9 254 50.0
SHI25579 Sapria himalayana HOM05D004071 ORTHO05D004501 4.6e-64 249.2 251 51.8
Nitab4.5_0003161g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 7.6e-59 231.9 130 82.3
Gohir.A03G111050 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.6e-53 213.0 140 73.6
Gohir.A04G081800 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.5e-46 190.3 131 77.1
Gohir.A13G168300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.6e-45 187.6 128 76.6
QL02p053385 Quercus lobata HOM05D004071 ORTHO05D004501 4.8e-45 186.0 105 81.0
Dinv33917 Davidia involucrata HOM05D004071 ORTHO05D004501 1.6e-40 171.0 119 73.9
unitig_52.g17623 Utricularia gibba HOM05D004071 ORTHO05D004501 4.8e-37 159.5 135 59.3
Solyc02g089780.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 5.6e-30 136.0 346 28.9
Actinidia17620 Actinidia chinensis HOM05D004071 ORTHO05D004501 8.2e-29 132.1 76 78.9
CBR_g39496 Chara braunii HOM05D004071 ORTHO05D004501 3.3e-22 110.2 149 35.6
Gohir.A10G225466 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.2e-19 101.7 57 82.5
SEGI_19153 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 2.0e-19 100.9 54 74.1
PRCOL_00004263 Prasinoderma coloniale HOM05D068002 ORTHO05D004501 5.0e-18 96.3 234 28.2
arahy.Tifrunner.gnm1.ann1.FI956K Arachis hypogaea HOM05D004071 ORTHO05D004501 2.4e-12 77.4 140 35.7
Haze_14102 Corylus avellana HOM05D004071 ORTHO05D004501 2.0e-11 74.3 75 66.7
HanXRQChr02g0053871 Helianthus annuus HOM05D004071 ORTHO05D004501 1.0e-10 72.0 103 42.7
BcaC02g08620 Brassica carinata HOM05D004071 ORTHO05D004501 1.4e-09 68.2 45 71.1
CBR_g42155 Chara braunii HOM05D004071 ORTHO05D004501 2.3e-07 60.8 141 27.7


User provided reference genes

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