Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_04556 Corchorus olitorius HOM05D000118 ORTHO05D160328 1.5e-33 145.6 72 100.0
COL.COLO4_36732 Corchorus olitorius HOM05D000118 ORTHO05D000872 5.7e-17 90.5 51 86.3
COL.COLO4_36738 Corchorus olitorius HOM05D000118 ORTHO05D000872 5.7e-17 90.5 49 89.8
COL.COLO4_36736 Corchorus olitorius HOM05D000118 ORTHO05D000872 7.4e-17 90.1 51 84.3
Thecc.07G149100 Theobroma cacao HOM05D000118 ORTHO05D000872 8.2e-16 86.7 51 80.4
Duzib213G0883 Durio zibethinus HOM05D000118 ORTHO05D000872 4.1e-15 84.3 51 80.4
Duzib243G0003 Durio zibethinus HOM05D000118 ORTHO05D000872 4.1e-15 84.3 51 80.4
Duzib213G0466 Durio zibethinus HOM05D000118 ORTHO05D000872 6.9e-15 83.6 51 80.4
Duzib213G0781 Durio zibethinus HOM05D000118 ORTHO05D000872 1.5e-14 82.4 51 78.4
Gohir.D01G027700 Gossypium hirsutum HOM05D000118 ORTHO05D000872 1.5e-14 82.4 51 78.4
Gorai.002G037000 Gossypium raimondii HOM05D000118 ORTHO05D000872 1.5e-14 82.4 51 78.4
Gohir.D01G027800 Gossypium hirsutum HOM05D000118 ORTHO05D000872 2.0e-14 82.0 51 78.4
Gorai.002G037100 Gossypium raimondii HOM05D000118 ORTHO05D000872 2.0e-14 82.0 51 78.4
COL.COLO4_36733 Corchorus olitorius HOM05D000118 ORTHO05D000872 2.6e-14 81.6 51 76.5
Thecc.07G149600 Theobroma cacao HOM05D000118 ORTHO05D000872 2.6e-14 81.6 50 78.0
Duzib213G0517 Durio zibethinus HOM05D000118 ORTHO05D000872 4.5e-14 80.9 51 76.5
Duzib213G0546 Durio zibethinus HOM05D000118 ORTHO05D000872 4.5e-14 80.9 51 78.4
Duzib243G0002 Durio zibethinus HOM05D000118 ORTHO05D000872 7.7e-14 80.1 51 74.5
Duzib243G0004 Durio zibethinus HOM05D000118 ORTHO05D000872 7.7e-14 80.1 51 74.5
Gohir.A01G039800 Gossypium hirsutum HOM05D000118 ORTHO05D000872 7.7e-14 80.1 74 58.1
Gohir.A01G040350 Gossypium hirsutum HOM05D000118 ORTHO05D000872 7.7e-14 80.1 51 76.5
Gohir.A01G039950 Gossypium hirsutum HOM05D000118 ORTHO05D000872 1.0e-13 79.7 51 76.5
Gorai.007G335400 Gossypium raimondii HOM05D000118 ORTHO05D000872 1.0e-13 79.7 51 76.5
Thecc.07G149300 Theobroma cacao HOM05D000118 ORTHO05D000872 1.0e-13 79.7 51 76.5
Gohir.D11G301300 Gossypium hirsutum HOM05D000118 ORTHO05D000872 1.3e-13 79.3 51 76.5
COL.COLO4_24026 Corchorus olitorius HOM05D000118 ORTHO05D158895 1.7e-13 79.0 38 94.7
Gohir.A01G040300 Gossypium hirsutum HOM05D000118 ORTHO05D000872 1.7e-13 79.0 51 74.5
COL.COLO4_36734 Corchorus olitorius HOM05D000118 ORTHO05D000872 2.2e-13 78.6 51 72.5
Gohir.A13G152600 Gossypium hirsutum HOM05D000118 ORTHO05D000872 5.0e-13 77.4 51 70.6
Gohir.D01G027600 Gossypium hirsutum HOM05D000118 ORTHO05D000872 5.0e-13 77.4 51 76.5
Gohir.D13G157000 Gossypium hirsutum HOM05D000118 ORTHO05D000872 5.0e-13 77.4 51 70.6
Gorai.002G036900 Gossypium raimondii HOM05D000118 ORTHO05D000872 5.0e-13 77.4 51 76.5
Gorai.013G177700 Gossypium raimondii HOM05D000118 ORTHO05D000872 5.0e-13 77.4 51 70.6
QL04p076951 Quercus lobata HOM05D000118 ORTHO05D000872 5.0e-13 77.4 51 72.5
Cfa019416 Carpinus fangiana HOM05D000118 ORTHO05D000872 1.9e-12 75.5 52 75.0
Gohir.A01G040400 Gossypium hirsutum HOM05D000118 ORTHO05D000872 2.5e-12 75.1 52 76.9
Gohir.D01G028000 Gossypium hirsutum HOM05D000118 ORTHO05D000872 3.2e-12 74.7 52 75.0
Gorai.002G037400 Gossypium raimondii HOM05D000118 ORTHO05D000872 3.2e-12 74.7 52 75.0
Cc00_g14460 Coffea canephora HOM05D000118 ORTHO05D000872 4.2e-12 74.3 51 70.6
Duzib268G1857 Durio zibethinus HOM05D000118 ORTHO05D000872 4.2e-12 74.3 53 73.6
Gohir.A11G291541 Gossypium hirsutum HOM05D000118 ORTHO05D000872 5.5e-12 73.9 51 74.5
Prupe.4G138300 Prunus persica HOM05D000118 ORTHO05D000872 5.5e-12 73.9 51 68.6
QL04p076873 Quercus lobata HOM05D000118 ORTHO05D000872 5.5e-12 73.9 51 68.6
Haze_08581 Corylus avellana HOM05D000118 ORTHO05D000872 7.2e-12 73.6 51 70.6
Cc00_g31170 Coffea canephora HOM05D000118 ORTHO05D000872 9.4e-12 73.2 51 68.6
COL.COLO4_03528 Corchorus olitorius HOM05D000118 ORTHO05D000872 9.4e-12 73.2 52 73.1
Duzib213G0271 Durio zibethinus HOM05D000118 ORTHO05D000872 9.4e-12 73.2 52 73.1
Duzib213G0479 Durio zibethinus HOM05D000118 ORTHO05D000872 9.4e-12 73.2 52 73.1
Ciclev10006882m.g Citrus clementina HOM05D000118 ORTHO05D000872 1.2e-11 72.8 52 71.2
Gorai.002G037300 Gossypium raimondii HOM05D000118 ORTHO05D000872 2.7e-11 71.6 51 66.7
Hma1.2p1_0334F.1_g128650 Hydrangea macrophylla HOM05D000118 ORTHO05D000872 2.7e-11 71.6 52 71.2
RcHm_v2.0_Chr5g0026211 Rosa chinensis HOM05D000118 ORTHO05D000872 2.7e-11 71.6 43 69.8
Atru.chr1.1559 Acer truncatum HOM05D000118 ORTHO05D000872 3.6e-11 71.2 52 69.2
Ciclev10007156m.g Citrus clementina HOM05D000118 ORTHO05D000872 3.6e-11 71.2 52 69.2
Aqoxy1G01523 Aquilegia oxysepala HOM05D000118 ORTHO05D000872 4.6e-11 70.9 51 64.7
TAR624G0781 Trochodendron aralioides HOM05D000118 ORTHO05D000872 4.6e-11 70.9 51 66.7
TAR625G0874 Trochodendron aralioides HOM05D000118 ORTHO05D000872 4.6e-11 70.9 51 66.7
GSVIVG01002342001 Vitis vinifera HOM05D000118 ORTHO05D000872 4.6e-11 70.9 52 69.2
GSVIVG01007263001 Vitis vinifera HOM05D000118 ORTHO05D000872 4.6e-11 70.9 52 69.2
FvH4_3g15580 Fragaria vesca HOM05D000118 ORTHO05D000872 6.1e-11 70.5 52 67.3
FAN11G3773 Fragaria x ananassa HOM05D000118 ORTHO05D000872 6.1e-11 70.5 52 67.3
FAN16G3128 Fragaria x ananassa HOM05D000118 ORTHO05D000872 6.1e-11 70.5 52 67.3
FAN25G0525 Fragaria x ananassa HOM05D000118 ORTHO05D000872 6.1e-11 70.5 52 67.3
MD05G1221300 Malus domestica HOM05D000118 ORTHO05D000872 6.1e-11 70.5 51 68.6
GSVIVG01020354001 Vitis vinifera HOM05D000118 ORTHO05D000872 1.0e-10 69.7 52 69.2
FAN21G3476 Fragaria x ananassa HOM05D000118 ORTHO05D000872 1.4e-10 69.3 45 71.1
Thecc.07G149000 Theobroma cacao HOM05D000118 ORTHO05D000872 1.4e-10 69.3 52 71.2
Manes.06G173330 Manihot esculenta HOM05D000118 ORTHO05D000872 1.8e-10 68.9 49 67.3
Manes.06G173264 Manihot esculenta HOM05D000118 ORTHO05D000872 2.3e-10 68.6 51 64.7
Nn7g37961 Nelumbo nucifera HOM05D000118 ORTHO05D000872 3.0e-10 68.2 49 69.4
Aqoxy1G01526 Aquilegia oxysepala HOM05D000118 ORTHO05D000872 3.9e-10 67.8 51 60.8
Glyma.08G169100 Glycine max HOM05D000118 ORTHO05D000872 5.1e-10 67.4 51 64.7
Oeu035709.1 Olea europaea HOM05D000118 ORTHO05D000872 5.1e-10 67.4 51 62.7
Gohir.A13G152700 Gossypium hirsutum HOM05D000118 ORTHO05D000872 8.8e-10 66.6 51 60.8
Hma1.2p1_0637F.1_g193400 Hydrangea macrophylla HOM05D000118 ORTHO05D000872 8.8e-10 66.6 52 67.3
CiPaw.05G048500 Carya illinoinensis HOM05D000118 ORTHO05D000872 1.1e-09 66.2 52 67.3
Lj3g0022418 Lotus japonicus HOM05D000118 ORTHO05D000872 1.1e-09 66.2 51 64.7
Gohir.A01G039900 Gossypium hirsutum HOM05D000118 ORTHO05D000872 2.5e-09 65.1 46 71.7
Cc01_g04340 Coffea canephora HOM05D000118 ORTHO05D000872 4.3e-09 64.3 51 60.8
Peaxi162Scf00185g00038 Petunia axillaris HOM05D000118 ORTHO05D000872 4.3e-09 64.3 51 66.7
Potri.005G097900 Populus trichocarpa HOM05D000118 ORTHO05D000872 7.4e-09 63.5 51 60.8
Actinidia37117 Actinidia chinensis HOM05D000118 ORTHO05D000872 9.7e-09 63.2 51 64.7
Gorai.013G177800 Gossypium raimondii HOM05D000118 ORTHO05D000872 9.7e-09 63.2 49 59.2
Medtr2g068800 Medicago truncatula HOM05D000118 ORTHO05D000872 9.7e-09 63.2 50 60.0
Hma1.2p1_0637F.1_g193420 Hydrangea macrophylla HOM05D000118 ORTHO05D000872 1.3e-08 62.8 52 63.5
Lalb_Chr20g0108651 Lupinus albus HOM05D000118 ORTHO05D000872 1.3e-08 62.8 51 60.8
Manes.14G012206 Manihot esculenta HOM05D000118 ORTHO05D000872 1.3e-08 62.8 51 62.7
Medtr2g068840 Medicago truncatula HOM05D000118 ORTHO05D000872 1.3e-08 62.8 48 66.7
Peaxi162Scf00559g00019 Petunia axillaris HOM05D000118 ORTHO05D000872 1.3e-08 62.8 51 66.7
Glyma.08G169201 Glycine max HOM05D000118 ORTHO05D000872 1.7e-08 62.4 49 65.3
arahy.Tifrunner.gnm1.ann1.NP9PNT Arachis hypogaea HOM05D000118 ORTHO05D000872 2.2e-08 62.0 51 56.9
Cc01_g01440 Coffea canephora HOM05D000118 ORTHO05D000872 2.8e-08 61.6 51 58.8
PGSC0003DMG400008650 Solanum tuberosum HOM05D000118 ORTHO05D000872 2.8e-08 61.6 51 60.8
TPR.G18471 Trifolium pratense HOM05D000118 ORTHO05D000872 2.8e-08 61.6 50 64.0
Actinidia35429 Actinidia chinensis HOM05D000118 ORTHO05D000872 3.7e-08 61.2 51 58.8
Manes.14G012203 Manihot esculenta HOM05D000118 ORTHO05D000872 3.7e-08 61.2 48 60.4
THA.LOC104810262 Tarenaya hassleriana HOM05D000118 ORTHO05D000872 3.7e-08 61.2 51 64.7
TAR626G0330 Trochodendron aralioides HOM05D000118 ORTHO05D000872 3.7e-08 61.2 51 62.7
TAR626G0629 Trochodendron aralioides HOM05D000118 ORTHO05D000872 3.7e-08 61.2 51 62.7
TAR626G1065 Trochodendron aralioides HOM05D000118 ORTHO05D000872 3.7e-08 61.2 51 62.7
Phvul.005G059100 Phaseolus vulgaris HOM05D000118 ORTHO05D000872 4.8e-08 60.8 51 60.8
Phvul.005G061066 Phaseolus vulgaris HOM05D000118 ORTHO05D000872 4.8e-08 60.8 51 60.8
Phvul.005G061132 Phaseolus vulgaris HOM05D000118 ORTHO05D000872 4.8e-08 60.8 51 60.8
TWI56G0956 Tripterygium wilfordii HOM05D000118 ORTHO05D000872 4.8e-08 60.8 51 62.7
Glyma.08G169300 Glycine max HOM05D000118 ORTHO05D000872 6.3e-08 60.5 51 60.8
Gohir.D13G157050 Gossypium hirsutum HOM05D000118 ORTHO05D000872 6.3e-08 60.5 42 59.5
Solyc11g045520.2 Solanum lycopersicum HOM05D000118 ORTHO05D000872 6.3e-08 60.5 51 60.8
Sopen11g021150 Solanum pennellii HOM05D000118 ORTHO05D000872 6.3e-08 60.5 51 60.8
Dinv19609 Davidia involucrata HOM05D000118 ORTHO05D000872 8.2e-08 60.1 56 62.5
Sabra05G0080200 Salix brachista HOM05D000118 ORTHO05D000872 8.2e-08 60.1 51 58.8
Lju4093A0G11 Lonicera japonica HOM05D000118 ORTHO05D000872 1.4e-07 59.3 51 60.8
arahy.Tifrunner.gnm1.ann1.34JQ7M Arachis hypogaea HOM05D000118 ORTHO05D000872 2.4e-07 58.5 51 54.9
Hma1.2p1_0637F.1_g193440 Hydrangea macrophylla HOM05D000118 ORTHO05D000872 2.4e-07 58.5 54 59.3
TPR.G18472 Trifolium pratense HOM05D000118 ORTHO05D000872 2.4e-07 58.5 48 66.7
ECA236G0817 Erigeron canadensis HOM05D000118 ORTHO05D000872 3.1e-07 58.2 51 60.8
Lsat_1_v5_gn_7_17400 Lactuca sativa HOM05D000118 ORTHO05D000872 3.1e-07 58.2 51 60.8
Lju760A0G18 Lonicera japonica HOM05D000118 ORTHO05D000872 3.1e-07 58.2 44 63.6
Aa31LG8G130 Aethionema arabicum HOM05D000118 ORTHO05D000872 4.1e-07 57.8 49 63.3
VMungo1080G1141 Vigna mungo HOM05D000118 ORTHO05D000872 4.1e-07 57.8 51 58.8
Sc20g0003010 Simmondsia chinensis HOM05D000118 ORTHO05D000872 5.3e-07 57.4 51 58.8
CSS0006729 Camellia sinensis var. sinensis HOM05D000118 ORTHO05D000872 6.9e-07 57.0 53 56.6
Dinv19610 Davidia involucrata HOM05D000118 ORTHO05D000872 6.9e-07 57.0 56 60.7
CANSAT80G2422 Cannabis sativa HOM05D000118 ORTHO05D000872 9.1e-07 56.6 51 60.8
Cc01_g02390 Coffea canephora HOM05D000118 ORTHO05D000872 9.1e-07 56.6 49 57.1
vmacro09779 Vaccinium macrocarpon HOM05D000118 ORTHO05D000872 9.1e-07 56.6 56 51.8
HanXRQChr05g0129631 Helianthus annuus HOM05D000118 ORTHO05D000872 2.0e-06 55.5 51 60.8
Lalb_Chr01g0015881 Lupinus albus HOM05D000118 ORTHO05D000872 2.6e-06 55.1 51 52.9
Ca_03659_v3 Cicer arietinum L. HOM05D000118 ORTHO05D000872 3.4e-06 54.7 51 60.8
vmacro13573 Vaccinium macrocarpon HOM05D000118 ORTHO05D000872 4.5e-06 54.3 59 52.5
Carub.0003s1226 Capsella rubella HOM05D000118 ORTHO05D000872 7.7e-06 53.5 49 61.2
Lsat_1_v5_gn_7_17461 Lactuca sativa HOM05D000118 ORTHO05D000872 7.7e-06 53.5 51 54.9


User provided reference genes

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