Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_04429 Corchorus olitorius HOM05D003430 ORTHO05D004809 8.8e-229 796.6 397 100.0
COL.COLO4_04428 Corchorus olitorius HOM05D003430 ORTHO05D004809 2.0e-156 556.2 377 77.5
SabraMtG0000400 Salix brachista HOM05D003430 ORTHO05D004809 4.4e-135 485.3 333 78.4
Solyc00g500241.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 2.8e-134 482.6 317 80.8
Solyc00g500224.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.4e-117 427.2 319 74.0
Medtr0082s0260 Medicago truncatula HOM05D003430 ORTHO05D004809 8.0e-113 411.4 345 69.3
Dinv06724 Davidia involucrata HOM05D003430 ORTHO05D004809 5.9e-108 395.2 229 89.5
Lj2C1222G64 Lonicera japonica HOM05D003430 ORTHO05D004809 2.3e-107 393.3 229 88.6
Sopen11g022460 Solanum pennellii HOM05D000004 ORTHO05D000002 2.5e-106 389.8 229 88.2
Sopen00g002720 Solanum pennellii HOM05D003430 ORTHO05D004809 3.3e-106 389.4 229 87.8
Peaxi162Scf00456g00037 Petunia axillaris HOM05D003430 ORTHO05D004809 4.2e-106 389.0 229 88.2
Nn1g10089 Nelumbo nucifera HOM05D003430 ORTHO05D004809 8.0e-105 384.8 229 87.3
Peaxi162Scf00456g00035 Petunia axillaris HOM05D003430 ORTHO05D004809 1.8e-104 383.6 254 80.7
BolSC28t60411H Brassica oleracea HOM05D003430 ORTHO05D004809 3.0e-104 382.9 231 85.3
Aa31csc1081G20 Aethionema arabicum HOM05D003430 ORTHO05D004809 2.6e-103 379.8 231 84.8
VMungo0044G0002 Vigna mungo HOM05D003430 ORTHO05D004809 1.8e-101 373.6 233 85.8
PGSC0003DMG400037371 Solanum tuberosum HOM05D003430 ORTHO05D004809 5.4e-101 372.1 229 84.7
ECA039G0023 Erigeron canadensis HOM05D003430 ORTHO05D004809 1.2e-100 370.9 329 65.7
Psat3g040120 Pisum sativum HOM05D003430 ORTHO05D004809 5.9e-100 368.6 233 85.0
Gorai.001G162300 Gossypium raimondii HOM05D003430 ORTHO05D004809 1.3e-99 367.5 210 89.5
Sc11g0004420 Simmondsia chinensis HOM05D003430 ORTHO05D004809 1.7e-99 367.1 229 84.7
HanXRQMTg0579531 Helianthus annuus HOM05D003430 ORTHO05D004809 2.3e-99 366.7 231 82.3
Lsat_1_v5_gn_6_109000 Lactuca sativa HOM05D003430 ORTHO05D004809 3.9e-99 365.9 259 75.3
Ah.01g011780 Amaranthus hybridus HOM05D003430 ORTHO05D004809 5.0e-99 365.5 229 83.8
Ah.10g028080 Amaranthus hybridus HOM05D003430 ORTHO05D004809 5.0e-99 365.5 229 83.8
AUR62042332 Chenopodium quinoa HOM05D003430 ORTHO05D004809 1.9e-98 363.6 229 83.8
Nn2g14911 Nelumbo nucifera HOM05D003430 ORTHO05D004809 3.3e-98 362.8 224 84.8
SalBow1G3892 Salvia bowleyana HOM05D003430 ORTHO05D004809 1.6e-97 360.5 229 84.3
SGA_v2.0_scaffold245G44667 Striga asiatica HOM05D003430 ORTHO05D004809 6.8e-96 355.1 229 83.0
Medtr0024s0140 Medicago truncatula HOM05D003430 ORTHO05D004809 1.2e-95 354.4 228 83.3
Lalb_Chr00c39g0409071 Lupinus albus HOM05D003430 ORTHO05D004809 1.1e-93 347.8 225 83.1
Lalb_Chr00c39g0409251 Lupinus albus HOM05D003430 ORTHO05D004809 1.1e-93 347.8 225 83.1
Lalb_Chr00c51g0413171 Lupinus albus HOM05D003430 ORTHO05D004809 1.1e-93 347.8 225 83.1
Lalb_Chr10g0094601 Lupinus albus HOM05D003430 ORTHO05D004809 1.1e-93 347.8 225 82.7
arahy.Tifrunner.gnm1.ann1.41QMJ9 Arachis hypogaea HOM05D003430 ORTHO05D004809 5.4e-93 345.5 231 80.1
arahy.Tifrunner.gnm1.ann1.ABQ8F7 Arachis hypogaea HOM05D003430 ORTHO05D004809 5.4e-93 345.5 231 80.1
arahy.Tifrunner.gnm1.ann1.AJMC4E Arachis hypogaea HOM05D003430 ORTHO05D004809 5.4e-93 345.5 231 80.1
arahy.Tifrunner.gnm1.ann1.CY2VCK Arachis hypogaea HOM05D003430 ORTHO05D004809 5.4e-93 345.5 231 80.1
Cfa023013 Carpinus fangiana HOM05D003430 ORTHO05D004809 9.2e-93 344.7 201 89.1
CDE02G0363 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 9.2e-93 344.7 229 78.6
unitig_87.g27925 Utricularia gibba HOM05D003430 ORTHO05D004809 3.5e-92 342.8 229 80.3
DCAR_032431 Daucus carota HOM05D003430 ORTHO05D004809 1.9e-90 337.0 201 86.6
Sp3g25650 Schrenkiella parvula HOM05D003430 ORTHO05D004809 4.3e-90 335.9 231 77.1
ATMG00180 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 1.4e-88 330.9 203 84.2
A04p09460 Brassica napus HOM05D003430 ORTHO05D004809 1.4e-88 330.9 203 84.2
BraSC177t45748Z Brassica rapa HOM05D003430 ORTHO05D004809 1.4e-88 330.9 203 84.2
CARHR282710 Cardamine hirsuta HOM05D003430 ORTHO05D004809 1.4e-88 330.9 203 84.2
CARHR288640 Cardamine hirsuta HOM05D003430 ORTHO05D004809 1.4e-88 330.9 203 84.2
Hma1.2p1_1286F.1_g273040 Hydrangea macrophylla HOM05D003430 ORTHO05D004809 6.8e-88 328.6 230 77.8
Ca_28103_v3 Cicer arietinum L. HOM05D003430 ORTHO05D004809 9.8e-87 324.7 222 79.3
HanXRQChr09g0250621 Helianthus annuus HOM05D003430 ORTHO05D004809 4.9e-86 322.4 210 80.5
Lj2C1231G44 Lonicera japonica HOM05D003430 ORTHO05D004809 5.4e-85 318.9 229 77.7
Lalb_Chr00c21g0406111 Lupinus albus HOM05D003430 ORTHO05D004809 7.1e-85 318.5 205 83.9
Nitab4.5_0003945g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 7.1e-85 318.5 205 81.5
TPR.G13784 Trifolium pratense HOM05D003430 ORTHO05D004809 1.2e-84 317.8 205 83.9
CANSAT16G0003 Cannabis sativa HOM05D003430 ORTHO05D004809 2.7e-84 316.6 201 84.6
Zm00001eb435500 Zea mays HOM05D003430 ORTHO05D004809 3.0e-83 313.2 221 75.1
Zm00001eb436090 Zea mays HOM05D003430 ORTHO05D004809 3.0e-83 313.2 221 75.1
Zm00001eb437350 Zea mays HOM05D003430 ORTHO05D004809 3.0e-83 313.2 221 75.1
Zm00001eb440330 Zea mays HOM05D003430 ORTHO05D004809 3.0e-83 313.2 221 75.1
Zm00001eb440360 Zea mays HOM05D003430 ORTHO05D004809 3.0e-83 313.2 221 75.1
Zm00001eb442170 Zea mays HOM05D003430 ORTHO05D004809 3.0e-83 313.2 221 75.1
HanXRQChr00c0055g0571401 Helianthus annuus HOM05D003430 ORTHO05D004809 1.1e-82 311.2 200 81.0
Solyc00g052430.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.9e-82 310.5 185 87.0
RcHm_v2.0_MTg0498431 Rosa chinensis HOM05D003430 ORTHO05D004809 4.3e-82 309.3 202 82.7
Nitab4.5_0001127g0210 Nicotiana tabacum HOM05D003430 ORTHO05D004809 7.3e-82 308.5 229 74.2
SHI42478 Sapria himalayana HOM05D003430 ORTHO05D004809 1.8e-80 303.9 237 73.0
SHI29634 Sapria himalayana HOM05D003430 ORTHO05D004809 1.6e-73 280.8 229 68.6
Gorai.002G142200 Gossypium raimondii HOM05D003430 ORTHO05D004809 4.0e-72 276.2 201 73.6
arahy.Tifrunner.gnm1.ann1.087TPC Arachis hypogaea HOM05D003430 ORTHO05D004809 7.6e-71 271.9 231 69.7
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 3.3e-66 256.5 151 84.8
RhsimMtG0004400 Rhododendron simsii HOM05D003430 ORTHO05D004809 1.9e-61 240.7 147 83.7
arahy.Tifrunner.gnm1.ann1.J6HUIG Arachis hypogaea HOM05D003430 ORTHO05D026951 1.8e-56 224.2 199 63.3
SHI50824 Sapria himalayana HOM05D003430 ORTHO05D004809 3.9e-51 206.5 148 76.4
Lj2C1222G56 Lonicera japonica HOM05D003430 ORTHO05D004809 2.8e-49 200.3 122 87.7
Nitab4.5_0010559g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 2.4e-48 197.2 114 85.1
Solyc11g039360.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 3.1e-48 196.8 133 76.7
Nitab4.5_0000172g0240 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.0e-46 191.8 232 51.7
BolC1t03461H Brassica oleracea HOM05D003430 ORTHO05D004809 1.2e-44 184.9 167 60.5
CAN.G600.1 Capsicum annuum HOM05D003430 ORTHO05D004809 6.0e-44 182.6 113 79.6
Nitab4.5_0004256g0030 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.3e-43 181.4 114 80.7
LjContig00439g0009782 Lotus japonicus HOM05D003430 ORTHO05D004809 2.3e-43 180.6 201 56.2
LjContig00446g0005008 Lotus japonicus HOM05D003430 ORTHO05D004809 2.3e-43 180.6 201 56.2
EL10Ac3g07005 Beta vulgaris HOM05D003430 ORTHO05D004809 3.0e-43 180.3 105 89.5
Nitab4.5_0000172g0960 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.6e-41 174.5 140 67.9
Thhalv10002931m.g Eutrema salsugineum HOM05D003430 ORTHO05D004809 1.5e-39 167.9 95 82.1
HanXRQChr11g0335401 Helianthus annuus HOM05D003430 ORTHO05D004809 1.7e-38 164.5 176 56.8
arahy.Tifrunner.gnm1.ann1.0UJ9QK Arachis hypogaea HOM05D003430 ORTHO05D004809 7.9e-36 155.6 143 66.4
HanXRQChr11g0335431 Helianthus annuus HOM05D003430 ORTHO05D004809 2.3e-35 154.1 162 61.1
Sabra12G0092700 Salix brachista HOM05D003430 ORTHO05D004809 3.6e-28 130.2 69 91.3
Lsat_1_v5_gn_5_16620 Lactuca sativa HOM05D003430 ORTHO05D004809 7.9e-28 129.0 105 70.5
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 1.4e-27 128.3 80 81.2
Hma1.2p1_0040F.1_g025060 Hydrangea macrophylla HOM05D003430 ORTHO05D014065 9.1e-24 115.5 57 96.5
Nitab4.5_0000172g1130 Nicotiana tabacum HOM05D003430 ORTHO05D004809 2.2e-22 110.9 85 67.1
Nitab4.5_0001152g0350 Nicotiana tabacum HOM05D003430 ORTHO05D004809 9.4e-21 105.5 59 84.7
SHI20516 Sapria himalayana HOM05D003430 ORTHO05D004809 1.2e-20 105.1 105 59.0
arahy.Tifrunner.gnm1.ann1.MTT5DF Arachis hypogaea HOM05D003430 ORTHO05D014065 4.7e-20 103.2 74 71.6
MBI05_g40995_MAGBIO Magnolia biondii HOM05D003430 ORTHO05D004809 3.9e-19 100.1 61 86.9
Gohir.D01G116901 Gossypium hirsutum HOM05D003430 ORTHO05D004809 6.7e-19 99.4 52 86.5
SHI31750 Sapria himalayana HOM05D003430 ORTHO05D014065 6.3e-17 92.8 100 55.0
SHI04802 Sapria himalayana HOM05D003430 ORTHO05D004809 5.9e-15 86.3 83 56.6
HPP92_026915 Vanilla planifolia HOM05D003430 ORTHO05D004809 7.7e-15 85.9 59 67.8
BolSC28t60376H Brassica oleracea HOM05D003430 ORTHO05D004809 9.4e-13 79.0 42 85.7
BolSC28t60410H Brassica oleracea HOM05D003430 ORTHO05D004809 9.4e-13 79.0 42 85.7
BraSC48t46246Z Brassica rapa HOM05D003430 ORTHO05D014065 9.4e-13 79.0 42 85.7
SHI33656 Sapria himalayana HOM05D003430 ORTHO05D004809 9.4e-13 79.0 51 70.6
TPR.G24362 Trifolium pratense HOM05D003430 ORTHO05D004809 9.4e-13 79.0 76 63.2
SHI04803 Sapria himalayana HOM05D003430 ORTHO05D004809 2.7e-12 77.4 80 52.5
SHI25674 Sapria himalayana HOM05D003430 ORTHO05D004809 4.7e-12 76.6 59 62.7
C01p34970 Brassica napus HOM05D003430 ORTHO05D014065 1.8e-11 74.7 50 68.0
BolC1t03463H Brassica oleracea HOM05D003430 ORTHO05D014065 1.8e-11 74.7 50 68.0
Nitab4.5_0001152g0410 Nicotiana tabacum HOM05D003430 ORTHO05D004809 5.2e-11 73.2 44 86.4
BraSC48t46245Z Brassica rapa HOM05D003430 ORTHO05D004809 1.1e-10 72.0 35 88.6
SHI20517 Sapria himalayana HOM05D003430 ORTHO05D004809 1.5e-10 71.6 83 51.8
BraSC54t46373Z Brassica rapa HOM05D003430 ORTHO05D004809 2.0e-10 71.2 34 91.2
BraSC77t46628Z Brassica rapa HOM05D003430 ORTHO05D004809 2.0e-10 71.2 34 91.2
BolC1t03462H Brassica oleracea HOM05D003430 ORTHO05D004809 2.6e-10 70.9 44 84.1
arahy.Tifrunner.gnm1.ann1.B82PT4 Arachis hypogaea HOM05D003430 ORTHO05D014065 4.4e-10 70.1 37 83.8
C01p34960 Brassica napus HOM05D003430 ORTHO05D004809 2.9e-06 57.4 43 72.1
Solyc04g071020.1 Solanum lycopersicum HOM05D003430 ORTHO05D000314 6.5e-06 56.2 51 64.7


User provided reference genes

Program Settings