Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_04428 Corchorus olitorius HOM05D003430 ORTHO05D004809 3.7e-171 604.7 299 100.0
COL.COLO4_04429 Corchorus olitorius HOM05D003430 ORTHO05D004809 2.6e-156 555.4 377 77.5
SabraMtG0000400 Salix brachista HOM05D003430 ORTHO05D004809 4.8e-94 348.6 250 74.8
Solyc00g500241.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 2.1e-89 333.2 234 76.1
Solyc00g500224.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 6.1e-89 331.6 233 76.0
Medtr0082s0260 Medicago truncatula HOM05D003430 ORTHO05D004809 3.2e-74 282.7 266 63.9
Lsat_1_v5_gn_6_109000 Lactuca sativa HOM05D003430 ORTHO05D004809 2.8e-70 269.6 176 77.8
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 8.0e-65 251.5 156 81.4
BolSC28t60411H Brassica oleracea HOM05D003430 ORTHO05D004809 3.0e-64 249.6 148 84.5
Dinv06724 Davidia involucrata HOM05D003430 ORTHO05D004809 3.0e-64 249.6 146 87.7
Sp3g25650 Schrenkiella parvula HOM05D003430 ORTHO05D004809 3.0e-64 249.6 148 84.5
Aa31csc1081G20 Aethionema arabicum HOM05D003430 ORTHO05D004809 5.2e-64 248.8 148 84.5
Nn1g10089 Nelumbo nucifera HOM05D003430 ORTHO05D004809 3.3e-63 246.1 146 86.3
Lj2C1222G64 Lonicera japonica HOM05D003430 ORTHO05D004809 5.7e-63 245.4 146 85.6
Hma1.2p1_1286F.1_g273040 Hydrangea macrophylla HOM05D003430 ORTHO05D004809 7.5e-63 245.0 147 86.4
Nn2g14911 Nelumbo nucifera HOM05D003430 ORTHO05D004809 2.2e-62 243.4 146 84.9
RhsimMtG0004400 Rhododendron simsii HOM05D003430 ORTHO05D004809 1.1e-61 241.1 146 84.2
Sopen00g002720 Solanum pennellii HOM05D003430 ORTHO05D004809 1.8e-61 240.4 146 84.9
Sopen11g022460 Solanum pennellii HOM05D000004 ORTHO05D000002 1.8e-61 240.4 146 84.9
Peaxi162Scf00456g00037 Petunia axillaris HOM05D003430 ORTHO05D004809 9.1e-61 238.0 146 84.2
Peaxi162Scf00456g00035 Petunia axillaris HOM05D003430 ORTHO05D004809 1.6e-60 237.3 171 74.9
arahy.Tifrunner.gnm1.ann1.J6HUIG Arachis hypogaea HOM05D003430 ORTHO05D026951 1.0e-59 234.6 203 64.5
VMungo0044G0002 Vigna mungo HOM05D003430 ORTHO05D004809 1.0e-59 234.6 150 84.0
ECA039G0023 Erigeron canadensis HOM05D003430 ORTHO05D004809 1.1e-58 231.1 246 57.7
HanXRQMTg0579531 Helianthus annuus HOM05D003430 ORTHO05D004809 1.5e-58 230.7 148 81.1
Psat3g040120 Pisum sativum HOM05D003430 ORTHO05D004809 3.2e-58 229.6 150 82.7
Medtr0024s0140 Medicago truncatula HOM05D003430 ORTHO05D004809 9.4e-58 228.0 150 82.0
Sc11g0004420 Simmondsia chinensis HOM05D003430 ORTHO05D004809 9.4e-58 228.0 146 81.5
AUR62042332 Chenopodium quinoa HOM05D003430 ORTHO05D004809 2.7e-57 226.5 146 81.5
Ah.01g011780 Amaranthus hybridus HOM05D003430 ORTHO05D004809 3.6e-57 226.1 146 80.8
Ah.10g028080 Amaranthus hybridus HOM05D003430 ORTHO05D004809 3.6e-57 226.1 146 80.8
PGSC0003DMG400037371 Solanum tuberosum HOM05D003430 ORTHO05D004809 4.7e-57 225.7 146 80.1
SalBow1G3892 Salvia bowleyana HOM05D003430 ORTHO05D004809 5.2e-56 222.2 146 80.8
SGA_v2.0_scaffold245G44667 Striga asiatica HOM05D003430 ORTHO05D004809 6.8e-56 221.9 146 80.8
Gorai.001G162300 Gossypium raimondii HOM05D003430 ORTHO05D004809 7.5e-55 218.4 127 86.6
CDE02G0363 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 8.3e-54 214.9 146 76.7
arahy.Tifrunner.gnm1.ann1.41QMJ9 Arachis hypogaea HOM05D003430 ORTHO05D004809 1.4e-53 214.2 120 88.3
arahy.Tifrunner.gnm1.ann1.ABQ8F7 Arachis hypogaea HOM05D003430 ORTHO05D004809 1.4e-53 214.2 120 88.3
arahy.Tifrunner.gnm1.ann1.AJMC4E Arachis hypogaea HOM05D003430 ORTHO05D004809 1.4e-53 214.2 120 88.3
arahy.Tifrunner.gnm1.ann1.CY2VCK Arachis hypogaea HOM05D003430 ORTHO05D004809 1.4e-53 214.2 120 88.3
Nitab4.5_0003945g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 3.1e-53 213.0 146 77.4
Lalb_Chr10g0094601 Lupinus albus HOM05D003430 ORTHO05D004809 4.1e-53 212.6 142 79.6
Lalb_Chr00c39g0409071 Lupinus albus HOM05D003430 ORTHO05D004809 2.0e-52 210.3 142 79.6
Lalb_Chr00c39g0409251 Lupinus albus HOM05D003430 ORTHO05D004809 2.0e-52 210.3 142 79.6
Lalb_Chr00c51g0413171 Lupinus albus HOM05D003430 ORTHO05D004809 2.0e-52 210.3 142 79.6
unitig_87.g27925 Utricularia gibba HOM05D003430 ORTHO05D004809 1.0e-51 208.0 146 76.0
SHI42478 Sapria himalayana HOM05D003430 ORTHO05D004809 5.0e-51 205.7 148 75.7
SHI50824 Sapria himalayana HOM05D003430 ORTHO05D004809 5.0e-51 205.7 148 76.4
Cfa023013 Carpinus fangiana HOM05D003430 ORTHO05D004809 5.5e-50 202.2 118 87.3
Nitab4.5_0010559g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.8e-48 197.2 114 85.1
Solyc11g039360.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.8e-48 197.2 133 76.7
arahy.Tifrunner.gnm1.ann1.087TPC Arachis hypogaea HOM05D003430 ORTHO05D004809 3.0e-48 196.4 119 83.2
Zm00001eb435500 Zea mays HOM05D003430 ORTHO05D004809 3.0e-48 196.4 138 73.2
Zm00001eb436090 Zea mays HOM05D003430 ORTHO05D004809 3.0e-48 196.4 138 73.2
Zm00001eb437350 Zea mays HOM05D003430 ORTHO05D004809 3.0e-48 196.4 138 73.2
Zm00001eb440330 Zea mays HOM05D003430 ORTHO05D004809 3.0e-48 196.4 138 73.2
Zm00001eb440360 Zea mays HOM05D003430 ORTHO05D004809 3.0e-48 196.4 138 73.2
Zm00001eb442170 Zea mays HOM05D003430 ORTHO05D004809 3.0e-48 196.4 138 73.2
ATMG00180 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 4.0e-48 196.1 120 81.7
A04p09460 Brassica napus HOM05D003430 ORTHO05D004809 4.0e-48 196.1 120 81.7
BraSC177t45748Z Brassica rapa HOM05D003430 ORTHO05D004809 4.0e-48 196.1 120 81.7
CARHR282710 Cardamine hirsuta HOM05D003430 ORTHO05D004809 4.0e-48 196.1 120 81.7
CARHR288640 Cardamine hirsuta HOM05D003430 ORTHO05D004809 4.0e-48 196.1 120 81.7
CANSAT16G0003 Cannabis sativa HOM05D003430 ORTHO05D004809 2.0e-47 193.7 118 84.7
Ca_28103_v3 Cicer arietinum L. HOM05D003430 ORTHO05D004809 2.6e-47 193.4 119 83.2
DCAR_032431 Daucus carota HOM05D003430 ORTHO05D004809 5.7e-47 192.2 118 83.1
HanXRQChr09g0250621 Helianthus annuus HOM05D003430 ORTHO05D004809 1.1e-45 188.0 127 78.0
RcHm_v2.0_MTg0498431 Rosa chinensis HOM05D003430 ORTHO05D004809 1.1e-45 188.0 121 81.8
BolC1t03461H Brassica oleracea HOM05D003430 ORTHO05D004809 2.4e-45 186.8 106 84.0
Solyc00g052430.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 2.4e-45 186.8 118 82.2
Nitab4.5_0001127g0210 Nicotiana tabacum HOM05D003430 ORTHO05D004809 3.5e-44 183.0 142 71.8
CAN.G600.1 Capsicum annuum HOM05D003430 ORTHO05D004809 4.5e-44 182.6 113 79.6
Nitab4.5_0004256g0030 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.0e-43 181.4 114 80.7
Lalb_Chr00c21g0406111 Lupinus albus HOM05D003430 ORTHO05D004809 1.3e-43 181.0 122 80.3
TPR.G13784 Trifolium pratense HOM05D003430 ORTHO05D004809 6.6e-43 178.7 122 80.3
HanXRQChr00c0055g0571401 Helianthus annuus HOM05D003430 ORTHO05D004809 7.3e-42 175.3 117 78.6
Lj2C1231G44 Lonicera japonica HOM05D003430 ORTHO05D004809 1.4e-40 171.0 146 68.5
Thhalv10002931m.g Eutrema salsugineum HOM05D003430 ORTHO05D004809 1.2e-39 167.9 95 82.1
SHI29634 Sapria himalayana HOM05D003430 ORTHO05D004809 4.4e-39 166.0 109 78.9
Nitab4.5_0000172g0240 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.2e-31 141.4 146 58.2
Gorai.002G142200 Gossypium raimondii HOM05D003430 ORTHO05D004809 4.4e-31 139.4 118 65.3
Sabra12G0092700 Salix brachista HOM05D003430 ORTHO05D004809 2.1e-28 130.6 69 91.3
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 1.0e-27 128.3 80 81.2
Hma1.2p1_0040F.1_g025060 Hydrangea macrophylla HOM05D003430 ORTHO05D014065 6.8e-24 115.5 57 96.5
HanXRQChr11g0335401 Helianthus annuus HOM05D003430 ORTHO05D004809 1.2e-23 114.8 78 75.6
arahy.Tifrunner.gnm1.ann1.MTT5DF Arachis hypogaea HOM05D003430 ORTHO05D014065 2.6e-23 113.6 78 74.4
Nitab4.5_0000172g1130 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.7e-22 110.9 85 67.1
Nitab4.5_0001152g0350 Nicotiana tabacum HOM05D003430 ORTHO05D004809 7.1e-21 105.5 59 84.7
Gohir.D01G116901 Gossypium hirsutum HOM05D003430 ORTHO05D004809 5.1e-19 99.4 52 86.5
SHI31750 Sapria himalayana HOM05D003430 ORTHO05D014065 2.4e-16 90.5 55 80.0
SHI04802 Sapria himalayana HOM05D003430 ORTHO05D004809 4.4e-15 86.3 83 56.6
HPP92_026915 Vanilla planifolia HOM05D003430 ORTHO05D004809 5.8e-15 85.9 59 67.8
BolSC28t60376H Brassica oleracea HOM05D003430 ORTHO05D004809 2.2e-14 84.0 44 88.6
BolSC28t60410H Brassica oleracea HOM05D003430 ORTHO05D004809 2.2e-14 84.0 44 88.6
BraSC48t46246Z Brassica rapa HOM05D003430 ORTHO05D014065 2.2e-14 84.0 44 88.6
HanXRQChr11g0335431 Helianthus annuus HOM05D003430 ORTHO05D004809 1.1e-13 81.6 79 63.3
SHI33656 Sapria himalayana HOM05D003430 ORTHO05D004809 7.1e-13 79.0 51 70.6
arahy.Tifrunner.gnm1.ann1.B82PT4 Arachis hypogaea HOM05D003430 ORTHO05D014065 2.1e-12 77.4 41 85.4
SHI04803 Sapria himalayana HOM05D003430 ORTHO05D004809 2.1e-12 77.4 80 52.5
SHI25674 Sapria himalayana HOM05D003430 ORTHO05D004809 3.5e-12 76.6 59 62.7
C01p34970 Brassica napus HOM05D003430 ORTHO05D014065 1.0e-11 75.1 43 83.7
BolC1t03463H Brassica oleracea HOM05D003430 ORTHO05D014065 1.0e-11 75.1 43 83.7
BraSC48t46245Z Brassica rapa HOM05D003430 ORTHO05D004809 8.7e-11 72.0 35 88.6
SHI20517 Sapria himalayana HOM05D003430 ORTHO05D004809 1.1e-10 71.6 83 51.8
BraSC54t46373Z Brassica rapa HOM05D003430 ORTHO05D004809 1.5e-10 71.2 34 91.2
BraSC77t46628Z Brassica rapa HOM05D003430 ORTHO05D004809 1.5e-10 71.2 34 91.2
LjContig00439g0009782 Lotus japonicus HOM05D003430 ORTHO05D004809 7.3e-10 68.9 39 87.2
LjContig00446g0005008 Lotus japonicus HOM05D003430 ORTHO05D004809 7.3e-10 68.9 39 87.2
TPR.G24362 Trifolium pratense HOM05D003430 ORTHO05D004809 9.6e-10 68.6 57 71.9
arahy.Tifrunner.gnm1.ann1.0UJ9QK Arachis hypogaea HOM05D003430 ORTHO05D004809 4.0e-08 63.2 32 87.5


User provided reference genes

Program Settings