Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_03992 Corchorus olitorius HOM05D004123 ORTHO05D004768 3.4e-149 531.6 257 100.0
Thecc.02G229500 Theobroma cacao HOM05D004123 ORTHO05D004768 1.2e-74 283.9 286 61.5
Gohir.A04G098200 Gossypium hirsutum HOM05D004123 ORTHO05D004768 3.9e-68 262.3 281 58.0
Gohir.D04G137875 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.1e-67 260.8 281 57.7
Gorai.012G122600 Gossypium raimondii HOM05D004123 ORTHO05D004768 1.1e-67 260.8 281 57.7
Duzib251G0145 Durio zibethinus HOM05D004123 ORTHO05D004768 2.8e-66 256.1 286 58.0
Duzib268G1624 Durio zibethinus HOM05D004123 ORTHO05D004768 7.1e-62 241.5 291 54.6
Duzib248G0829 Durio zibethinus HOM05D004123 ORTHO05D004768 1.6e-61 240.4 289 54.7
Manes.14G103000 Manihot esculenta HOM05D004123 ORTHO05D004768 1.5e-51 207.2 289 48.4
Potri.008G121200 Populus trichocarpa HOM05D004123 ORTHO05D004768 2.4e-49 199.9 288 49.0
Sabra08G0091900 Salix brachista HOM05D004123 ORTHO05D004768 2.9e-47 193.0 309 46.3
Ciclev10018307m.g Citrus clementina HOM05D004123 ORTHO05D004768 5.5e-46 188.7 303 45.5
Cpa.g.sc350.1 Carica papaya HOM05D004123 ORTHO05D004768 3.5e-45 186.0 292 47.3
Manes.06G067400 Manihot esculenta HOM05D004123 ORTHO05D004768 4.3e-43 179.1 260 47.7
Gohir.D02G170500 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.1e-41 174.5 284 46.1
Dinv21080 Davidia involucrata HOM05D004123 ORTHO05D004768 1.4e-41 174.1 251 49.0
Haze_17490 Corylus avellana HOM05D004123 ORTHO05D004768 4.0e-41 172.6 311 42.4
Gorai.005G191500 Gossypium raimondii HOM05D004123 ORTHO05D004768 6.9e-41 171.8 280 45.4
Gohir.A03G147300 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.1e-38 164.5 280 43.6
Potri.010G124200 Populus trichocarpa HOM05D004123 ORTHO05D004768 2.5e-38 163.3 183 59.0
Sed0009095 Sechium edule HOM05D004123 ORTHO05D004768 3.2e-38 162.9 280 43.6
GSVIVG01011890001 Vitis vinifera HOM05D004123 ORTHO05D004768 4.2e-38 162.5 327 39.8
QL01p041642 Quercus lobata HOM05D004123 ORTHO05D004768 5.5e-38 162.2 295 43.7
Nn3g17856 Nelumbo nucifera HOM05D004123 ORTHO05D004768 7.1e-38 161.8 303 41.6
TAR622G0492 Trochodendron aralioides HOM05D004123 ORTHO05D004768 3.5e-37 159.5 299 42.5
ClCG03G009600 Citrullus lanatus HOM05D004123 ORTHO05D004768 6.3e-34 148.7 285 40.7
MSTRG.844 Avicennia marina HOM05D004123 ORTHO05D004768 1.8e-33 147.1 278 40.3
Phvul.007G027700 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 1.8e-33 147.1 277 40.1
CiPaw.15G085900 Carya illinoinensis HOM05D004123 ORTHO05D004768 2.4e-33 146.7 298 39.6
Prupe.1G311900 Prunus persica HOM05D004123 ORTHO05D004768 2.4e-33 146.7 298 42.6
CsaV3_5G023110 Cucumis sativus L. HOM05D004123 ORTHO05D004768 4.1e-33 146.0 284 40.8
Medtr1g110710 Medicago truncatula HOM05D004123 ORTHO05D004768 2.0e-32 143.7 309 38.5
MELO3C003021.2 Cucumis melo HOM05D004123 ORTHO05D004768 2.2e-31 140.2 286 39.9
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 1.1e-30 137.9 304 37.5
Glyma.10G273800 Glycine max HOM05D004123 ORTHO05D004768 3.2e-30 136.3 285 38.6
Cfa018590 Carpinus fangiana HOM05D004123 ORTHO05D004768 4.2e-30 136.0 192 51.0
FvH4_4g27300 Fragaria vesca HOM05D004123 ORTHO05D004768 1.6e-29 134.0 317 37.5
Aqoxy3G00286 Aquilegia oxysepala HOM05D004123 ORTHO05D004768 3.6e-29 132.9 327 36.7
TPR.G18823 Trifolium pratense HOM05D004123 ORTHO05D004768 7.9e-29 131.7 309 37.9
Psat6g227440 Pisum sativum HOM05D004123 ORTHO05D004768 2.3e-28 130.2 294 37.4
Lj5g0020149 Lotus japonicus HOM05D004123 ORTHO05D004768 5.7e-27 125.6 322 35.4
VMungo0720G2589 Vigna mungo HOM05D004123 ORTHO05D004768 7.4e-27 125.2 267 39.0
MSTRG.13535 Avicennia marina HOM05D004123 ORTHO05D004768 9.7e-27 124.8 262 36.6
Lj2g0014688 Lotus japonicus HOM05D004123 ORTHO05D004768 9.7e-27 124.8 282 38.7
SHI16201 Sapria himalayana HOM05D004123 ORTHO05D004768 9.7e-27 124.8 285 36.8
Cc11_g10070 Coffea canephora HOM05D004123 ORTHO05D004768 2.2e-26 123.6 299 36.8
CiPaw.16G065300 Carya illinoinensis HOM05D004123 ORTHO05D004768 8.2e-26 121.7 283 38.2
FAN12G0145 Fragaria x ananassa HOM05D004123 ORTHO05D004768 2.4e-25 120.2 339 33.6
FAN12G0921 Fragaria x ananassa HOM05D004123 ORTHO05D004768 2.4e-25 120.2 339 33.6
TWI31G0276 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 2.4e-25 120.2 268 41.0
Dinv31634 Davidia involucrata HOM05D004123 ORTHO05D004768 5.3e-25 119.0 187 44.9
FAN07G2244 Fragaria x ananassa HOM05D004123 ORTHO05D004768 2.0e-24 117.1 346 32.9
Nn4g23857 Nelumbo nucifera HOM05D004123 ORTHO05D004768 2.6e-24 116.7 351 31.9
Lj5g0023256 Lotus japonicus HOM05D004123 ORTHO05D004768 4.5e-24 115.9 285 37.9
Rhsim09G0107600 Rhododendron simsii HOM05D004123 ORTHO05D004768 3.8e-23 112.8 298 34.2
Nitab4.5_0003373g0030 Nicotiana tabacum HOM05D004123 ORTHO05D004768 6.5e-23 112.1 208 40.4
MD16G1042200 Malus domestica HOM05D004123 ORTHO05D004768 3.2e-22 109.8 258 37.2
PGR119G1213 Punica granatum HOM05D004123 ORTHO05D004768 3.2e-22 109.8 244 38.5
Eucgr.G02316 Eucalyptus grandis HOM05D004123 ORTHO05D004768 4.2e-22 109.4 282 37.9
Oeu043592.1 Olea europaea HOM05D004123 ORTHO05D004768 9.4e-22 108.2 272 34.9
SalBow8G0349 Salvia bowleyana HOM05D004123 ORTHO05D004768 9.4e-22 108.2 267 34.5
MD13G1040900 Malus domestica HOM05D004123 ORTHO05D004768 1.6e-21 107.5 258 38.0
Lj6C757T7 Lonicera japonica HOM05D004123 ORTHO05D004768 4.6e-21 105.9 326 34.7
Sp5g23550 Schrenkiella parvula HOM05D004123 ORTHO05D004768 3.9e-20 102.8 264 34.5
TWI75G1885 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 5.1e-20 102.4 240 40.0
Oeu034240.1 Olea europaea HOM05D004123 ORTHO05D004768 3.3e-19 99.8 283 33.6
Glyma.20G116200 Glycine max HOM05D004123 ORTHO05D004768 7.4e-19 98.6 282 34.4
A02p15050 Brassica napus HOM05D004123 ORTHO05D004768 9.7e-19 98.2 267 33.0
TAR374G0469 Trochodendron aralioides HOM05D004123 ORTHO05D004768 6.3e-18 95.5 238 34.0
Thhalv10019033m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 1.1e-17 94.7 267 34.5
Lsat_1_v5_gn_8_40481 Lactuca sativa HOM05D004123 ORTHO05D004768 3.1e-17 93.2 290 32.1
Nitab4.5_0000791g0080 Nicotiana tabacum HOM05D004123 ORTHO05D004768 5.3e-17 92.4 149 45.6
Actinidia14896 Actinidia chinensis HOM05D004123 ORTHO05D004768 9.1e-17 91.7 257 34.6
C06p41480 Brassica napus HOM05D004123 ORTHO05D004768 9.1e-17 91.7 266 33.1
BolC6t39275H Brassica oleracea HOM05D004123 ORTHO05D004768 9.1e-17 91.7 266 33.1
vmacro10561 Vaccinium macrocarpon HOM05D004123 ORTHO05D004768 9.1e-17 91.7 251 33.9
BcaC08g46276 Brassica carinata HOM05D004123 ORTHO05D004768 1.2e-16 91.3 265 33.2
Lalb_Chr02g0145931 Lupinus albus HOM05D004123 ORTHO05D004768 2.0e-16 90.5 166 42.2
Lalb_Chr21g0308891 Lupinus albus HOM05D004123 ORTHO05D004768 2.0e-16 90.5 249 34.1
BcaB03g15826 Brassica carinata HOM05D004123 ORTHO05D004768 7.7e-16 88.6 264 33.3
A07p34880 Brassica napus HOM05D004123 ORTHO05D004768 7.7e-16 88.6 265 32.5
Solyc05g009380.4 Solanum lycopersicum HOM05D004123 ORTHO05D004768 6.5e-15 85.5 293 32.1
BolC2t08567H Brassica oleracea HOM05D004123 ORTHO05D004768 8.5e-15 85.1 265 32.1
THA.LOC104805006 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 2.5e-14 83.6 234 33.8
VMungo1215G3079 Vigna mungo HOM05D004123 ORTHO05D004768 5.5e-14 82.4 296 32.4
PSO782G4509 Papaver somniferum HOM05D004123 ORTHO05D004768 9.4e-14 81.6 361 29.9
AL2G27340 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 1.2e-13 81.3 264 31.4
Carub.0002s1499 Capsella rubella HOM05D004123 ORTHO05D004768 1.2e-13 81.3 269 32.0
CARHR061260 Cardamine hirsuta HOM05D004123 ORTHO05D004768 1.6e-13 80.9 264 31.4
Ca_03055_v3 Cicer arietinum L. HOM05D004123 ORTHO05D004768 1.6e-13 80.9 186 37.6
C02p24750 Brassica napus HOM05D004123 ORTHO05D004768 2.1e-13 80.5 267 31.5
unitig_8.g3254 Utricularia gibba HOM05D004123 ORTHO05D004768 6.1e-13 79.0 268 31.3
AT1G68480 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 7.9e-13 78.6 265 32.5
arahy.Tifrunner.gnm1.ann1.1XFG43 Arachis hypogaea HOM05D004123 ORTHO05D004768 7.9e-13 78.6 243 35.0
PSO063G6205 Papaver somniferum HOM05D004123 ORTHO05D004768 7.9e-13 78.6 316 30.7
unitig_22.g6557 Utricularia gibba HOM05D004123 ORTHO05D004768 7.9e-13 78.6 270 30.7
Aa31sc366G10 Aethionema arabicum HOM05D004123 ORTHO05D004768 1.0e-12 78.2 284 32.4
arahy.Tifrunner.gnm1.ann1.U1U6XH Arachis hypogaea HOM05D004123 ORTHO05D004768 1.0e-12 78.2 258 32.2
HanXRQChr08g0213911 Helianthus annuus HOM05D004123 ORTHO05D004768 1.0e-12 78.2 236 33.9
Sed0004295 Sechium edule HOM05D004123 ORTHO05D004768 2.3e-12 77.0 241 32.0
Lalb_Chr10g0100051 Lupinus albus HOM05D004123 ORTHO05D004768 3.9e-12 76.3 238 32.8
CDE12G0443 Ceratophyllum demersum HOM05D004123 ORTHO05D004768 6.7e-12 75.5 223 32.7
CSS0039482 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 1.1e-11 74.7 54 70.4
unitig_747.g21201 Utricularia gibba HOM05D004123 ORTHO05D004768 1.5e-11 74.3 265 29.4
CSS0040364 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 2.6e-11 73.6 130 43.8
FAN22G2099 Fragaria x ananassa HOM05D004123 ORTHO05D004768 1.3e-10 71.2 340 27.4
CAN.G610.78 Capsicum annuum HOM05D004123 ORTHO05D004768 2.2e-10 70.5 260 28.8
Lsat_1_v5_gn_3_59041 Lactuca sativa HOM05D004123 ORTHO05D004768 8.2e-10 68.6 240 34.2
THA.LOC104821930 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 8.2e-10 68.6 238 30.3
DCAR_026735 Daucus carota HOM05D004123 ORTHO05D004768 1.1e-09 68.2 280 30.7
BraA02t06569Z Brassica rapa HOM05D004123 ORTHO05D004768 1.8e-09 67.4 171 35.1
Sabra10G0094200 Salix brachista HOM05D004123 ORTHO05D004768 1.6e-08 64.3 53 62.3
CANSAT01G1980 Cannabis sativa HOM05D004123 ORTHO05D004768 2.0e-08 63.9 250 31.2
RcHm_v2.0_Chr4g0435091 Rosa chinensis HOM05D004123 ORTHO05D004768 2.6e-08 63.5 203 34.5
ATR1125G037 Amborella trichopoda HOM05D004123 ORTHO05D004768 4.5e-08 62.8 195 34.4
BcaB05g24386 Brassica carinata HOM05D004123 ORTHO05D004768 5.9e-08 62.4 68 52.9
SalBow8G0756 Salvia bowleyana HOM05D004123 ORTHO05D004768 5.9e-08 62.4 241 30.7
Phvul.003G031000 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 2.2e-07 60.5 285 28.4
Thhalv10009343m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 3.8e-07 59.7 220 28.2
HanXRQChr09g0252701 Helianthus annuus HOM05D004123 ORTHO05D004768 3.8e-07 59.7 118 38.1
Psat6g226920 Pisum sativum HOM05D004123 ORTHO05D004768 6.5e-07 58.9 253 29.2
Sc04g0006360 Simmondsia chinensis HOM05D004123 ORTHO05D004768 9.4e-06 55.1 275 28.4


User provided reference genes

Program Settings