Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_03654 Corchorus olitorius HOM05D004702 ORTHO05D005505 8.4e-290 999.6 488 100.0
Duzib093G1440 Durio zibethinus HOM05D004702 ORTHO05D005505 4.1e-220 768.1 486 80.2
Thecc.08G002800 Theobroma cacao HOM05D004702 ORTHO05D005505 1.6e-219 766.1 486 80.5
Duzib041G0633 Durio zibethinus HOM05D004702 ORTHO05D005505 2.9e-213 745.3 486 78.8
Gorai.009G214400 Gossypium raimondii HOM05D004702 ORTHO05D005505 8.9e-207 723.8 487 76.6
Gohir.D05G207800 Gossypium hirsutum HOM05D004702 ORTHO05D005505 2.6e-206 722.2 487 76.4
Gohir.A05G204600 Gossypium hirsutum HOM05D004702 ORTHO05D005505 8.4e-205 717.2 487 76.4
Ciclev10001048m.g Citrus clementina HOM05D004702 ORTHO05D005505 1.3e-186 656.8 485 69.9
Manes.18G040500 Manihot esculenta HOM05D004702 ORTHO05D005505 1.6e-176 623.2 490 67.1
Manes.05G176200 Manihot esculenta HOM05D004702 ORTHO05D005505 2.1e-176 622.9 493 67.1
Potri.002G123800 Populus trichocarpa HOM05D004702 ORTHO05D005505 1.2e-171 607.1 490 64.9
CANSAT25G0849 Cannabis sativa HOM05D004702 ORTHO05D005505 2.1e-171 606.3 488 64.5
Potri.014G025000 Populus trichocarpa HOM05D004702 ORTHO05D005505 1.3e-170 603.6 477 65.6
Sabra02G0097200 Salix brachista HOM05D004702 ORTHO05D005505 1.8e-170 603.2 478 65.7
Cpa.g.sc21.167 Carica papaya HOM05D004702 ORTHO05D005505 2.4e-167 592.8 494 64.4
Gorai.010G022200 Gossypium raimondii HOM05D004702 ORTHO05D005505 1.2e-166 590.5 495 64.8
Gohir.D06G019009 Gossypium hirsutum HOM05D004702 ORTHO05D005505 2.6e-166 589.3 495 64.6
Sabra14G0017000 Salix brachista HOM05D004702 ORTHO05D005505 2.2e-165 586.3 489 63.6
Gohir.A06G020700 Gossypium hirsutum HOM05D004702 ORTHO05D005505 2.9e-165 585.9 494 63.8
Dinv35933 Davidia involucrata HOM05D004702 ORTHO05D005505 2.0e-161 573.2 497 63.4
Eucgr.F00191 Eucalyptus grandis HOM05D004702 ORTHO05D005505 1.3e-160 570.5 464 64.0
TWI56G0769 Tripterygium wilfordii HOM05D004702 ORTHO05D005505 1.1e-159 567.4 440 66.6
Prupe.1G431800 Prunus persica HOM05D004702 ORTHO05D005505 5.5e-156 555.1 490 60.8
Atru.BG.237.p Acer truncatum HOM05D004702 ORTHO05D005505 3.0e-154 549.3 386 74.9
TAR376G0323 Trochodendron aralioides HOM05D004702 ORTHO05D005505 3.9e-154 548.9 483 60.5
TAR381G0178 Trochodendron aralioides HOM05D004702 ORTHO05D005505 2.6e-153 546.2 495 58.4
Cc10_g04740 Coffea canephora HOM05D004702 ORTHO05D005505 3.3e-153 545.8 493 58.4
CSS0001222 Camellia sinensis var. sinensis HOM05D004702 ORTHO05D005505 4.1e-151 538.9 505 60.8
Phvul.009G067000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 4.1e-151 538.9 502 58.6
Glyma.06G042300 Glycine max HOM05D004702 ORTHO05D005505 7.0e-151 538.1 511 58.5
MD08G1095800 Malus domestica HOM05D004702 ORTHO05D005505 7.0e-151 538.1 485 58.6
Hma1.2p1_0360F.1_g135770 Hydrangea macrophylla HOM05D004702 ORTHO05D005505 1.3e-149 533.9 495 59.8
VMungo1309G0408 Vigna mungo HOM05D004702 ORTHO05D005505 2.2e-149 533.1 502 58.2
MD15G1078600 Malus domestica HOM05D004702 ORTHO05D005505 1.9e-148 530.0 444 62.6
Nitab4.5_0000287g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 1.9e-148 530.0 496 58.1
Oeu054792.1 Olea europaea HOM05D004702 ORTHO05D005505 5.5e-148 528.5 492 58.5
Glyma.17G239800 Glycine max HOM05D004702 ORTHO05D005505 6.1e-147 525.0 490 58.2
arahy.Tifrunner.gnm1.ann1.L8L5ZS Arachis hypogaea HOM05D004702 ORTHO05D005505 8.8e-146 521.2 515 55.7
Oeu009775.1 Olea europaea HOM05D004702 ORTHO05D005505 2.6e-145 519.6 490 57.6
Actinidia22651 Actinidia chinensis HOM05D004702 ORTHO05D005505 4.4e-145 518.8 493 58.6
Nitab4.5_0005129g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 7.5e-145 518.1 496 56.9
RcHm_v2.0_Chr6g0308391 Rosa chinensis HOM05D004702 ORTHO05D005505 9.7e-145 517.7 488 58.8
arahy.Tifrunner.gnm1.ann1.WJS3XD Arachis hypogaea HOM05D004702 ORTHO05D005505 2.2e-144 516.5 516 55.2
CAN.G1030.31 Capsicum annuum HOM05D004702 ORTHO05D005505 2.8e-144 516.2 504 56.5
VMungo0647G1506 Vigna mungo HOM05D004702 ORTHO05D005505 4.1e-143 512.3 495 56.2
QL02p004185 Quercus lobata HOM05D004702 ORTHO05D005505 5.9e-142 508.4 486 56.6
DCAR_012789 Daucus carota HOM05D004702 ORTHO05D005505 1.0e-141 507.7 499 57.1
Dinv39282 Davidia involucrata HOM05D004702 ORTHO05D005505 1.3e-141 507.3 503 56.9
Lj4C62G3 Lonicera japonica HOM05D004702 ORTHO05D005505 1.3e-141 507.3 442 60.2
Lj1g0008884 Lotus japonicus HOM05D004702 ORTHO05D005505 1.5e-140 503.8 500 58.0
FAN24G1074 Fragaria x ananassa HOM05D004702 ORTHO05D005505 3.2e-140 502.7 496 58.1
FvH4_2g33990 Fragaria vesca HOM05D004702 ORTHO05D005505 5.5e-140 501.9 500 57.8
Lsat_1_v5_gn_1_22040 Lactuca sativa HOM05D004702 ORTHO05D005505 9.4e-140 501.1 499 54.7
FAN15G1938 Fragaria x ananassa HOM05D004702 ORTHO05D005505 1.6e-139 500.4 492 57.9
PGR083G2110 Punica granatum HOM05D004702 ORTHO05D005505 2.1e-139 500.0 506 55.9
FAN20G1472 Fragaria x ananassa HOM05D004702 ORTHO05D005505 6.8e-138 495.0 497 57.7
CiPaw.15G053800 Carya illinoinensis HOM05D004702 ORTHO05D005505 8.8e-138 494.6 489 56.4
FAN27G2110 Fragaria x ananassa HOM05D004702 ORTHO05D005505 1.5e-137 493.8 497 57.5
TPR.G24175 Trifolium pratense HOM05D004702 ORTHO05D005505 2.6e-137 493.0 505 55.0
Medtr3g102120 Medicago truncatula HOM05D004702 ORTHO05D005505 4.8e-136 488.8 494 55.3
Actinidia01089 Actinidia chinensis HOM05D004702 ORTHO05D005505 3.1e-135 486.1 455 59.8
Haze_18055 Corylus avellana HOM05D004702 ORTHO05D005505 7.7e-134 481.5 477 56.2
Cfa009956 Carpinus fangiana HOM05D004702 ORTHO05D005505 2.2e-133 479.9 488 56.1
Psat0s3591g0040 Pisum sativum HOM05D004702 ORTHO05D005505 3.8e-133 479.2 497 53.5
Haze_18053 Corylus avellana HOM05D004702 ORTHO05D005505 1.1e-132 477.6 476 55.9
Medtr1g019040 Medicago truncatula HOM05D004702 ORTHO05D005505 3.2e-132 476.1 493 53.1
vmacro21496 Vaccinium macrocarpon HOM05D004702 ORTHO05D005505 7.2e-132 474.9 506 55.5
SalBow7G0327 Salvia bowleyana HOM05D004702 ORTHO05D005505 9.5e-132 474.6 492 51.4
ECA247G0009 Erigeron canadensis HOM05D004702 ORTHO05D005505 4.7e-131 472.2 505 54.5
Ca_15936_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 4.4e-129 465.7 500 54.4
Aqoxy6G01249 Aquilegia oxysepala HOM05D004702 ORTHO05D005505 7.5e-129 464.9 490 50.6
MELO3C016778.2 Cucumis melo HOM05D004702 ORTHO05D005505 4.1e-127 459.1 479 55.1
Peaxi162Scf00882g00017 Petunia axillaris HOM05D004702 ORTHO05D005505 4.1e-127 459.1 498 51.4
CsaV3_4G034620 Cucumis sativus L. HOM05D004702 ORTHO05D005505 2.0e-126 456.8 489 54.4
TPR.G3800 Trifolium pratense HOM05D004702 ORTHO05D005505 5.9e-126 455.3 506 51.6
DCAR_019426 Daucus carota HOM05D004702 ORTHO05D005505 7.3e-124 448.4 493 51.1
PGSC0003DMG400008008 Solanum tuberosum HOM05D004702 ORTHO05D005505 2.8e-123 446.4 449 55.9
TAR625G0654 Trochodendron aralioides HOM05D004702 ORTHO05D005505 3.6e-123 446.0 418 56.2
ClCG05G020100 Citrullus lanatus HOM05D004702 ORTHO05D005505 2.3e-122 443.4 479 53.2
HanXRQChr09g0267191 Helianthus annuus HOM05D004702 ORTHO05D005505 1.5e-121 440.7 412 57.8
Nn5g30368 Nelumbo nucifera HOM05D004702 ORTHO05D005505 1.5e-121 440.7 449 54.8
HanXRQChr10g0286851 Helianthus annuus HOM05D004702 ORTHO05D005505 7.5e-121 438.3 489 50.1
Lalb_Chr14g0368541 Lupinus albus HOM05D004702 ORTHO05D005505 2.2e-120 436.8 490 51.2
Glyma.14G085000 Glycine max HOM05D004702 ORTHO05D005505 2.9e-120 436.4 468 52.4
Solyc04g078630.3 Solanum lycopersicum HOM05D004702 ORTHO05D005505 1.4e-119 434.1 501 50.9
MSTRG.1063 Avicennia marina HOM05D004702 ORTHO05D005505 1.2e-118 431.0 491 50.5
HanXRQChr04g0103941 Helianthus annuus HOM05D004702 ORTHO05D005505 4.6e-118 429.1 489 50.7
PSO675G4695 Papaver somniferum HOM05D004702 ORTHO05D005505 2.3e-117 426.8 464 52.6
PSO541G5103 Papaver somniferum HOM05D004702 ORTHO05D005505 5.0e-117 425.6 458 53.5
ECA232G1346 Erigeron canadensis HOM05D004702 ORTHO05D005505 5.6e-116 422.2 408 57.4
Sopen04g032210 Solanum pennellii HOM05D004702 ORTHO05D005505 5.6e-116 422.2 419 56.6
MBI16_g04313_MAGBIO Magnolia biondii HOM05D004702 ORTHO05D005505 7.3e-116 421.8 507 49.9
Sc02g0007400 Simmondsia chinensis HOM05D004702 ORTHO05D005505 4.0e-114 416.0 402 58.0
Phvul.001G024000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 4.4e-113 412.5 362 61.3
Sed0014061 Sechium edule HOM05D004702 ORTHO05D005505 1.4e-111 407.5 483 50.9
HanXRQChr16g0509011 Helianthus annuus HOM05D004702 ORTHO05D005505 3.2e-111 406.4 411 55.5
Lj5g0017670 Lotus japonicus HOM05D004702 ORTHO05D005505 1.3e-109 401.0 491 47.5
Hund05336 Selenicereus undatus HOM05D004702 ORTHO05D005505 6.6e-109 398.7 493 47.3
Migut.C00543 Erythranthe guttata HOM05D004702 ORTHO05D005505 3.3e-108 396.4 513 47.4
AUR62035465 Chenopodium quinoa HOM05D004702 ORTHO05D005505 2.1e-107 393.7 437 51.9
THA.LOC104801428 Tarenaya hassleriana HOM05D004702 ORTHO05D005505 8.9e-106 388.3 513 44.8
AL6G41200 Arabidopsis lyrata HOM05D004702 ORTHO05D005505 9.8e-105 384.8 512 46.3
Thhalv10028638m.g Eutrema salsugineum HOM05D004702 ORTHO05D005505 9.8e-105 384.8 512 45.7
Ah.05g167300 Amaranthus hybridus HOM05D004702 ORTHO05D005505 2.2e-104 383.6 448 48.2
Rhsim06G0053300 Rhododendron simsii HOM05D004702 ORTHO05D005505 9.2e-103 378.3 415 54.0
Aa31LG3G14060 Aethionema arabicum HOM05D004702 ORTHO05D005505 2.3e-101 373.6 513 46.0
SGA_v2.0_scaffold14G06974 Striga asiatica HOM05D004702 ORTHO05D005505 3.0e-101 373.2 493 45.4
EL10As7g23762 Beta vulgaris HOM05D004702 ORTHO05D005505 3.9e-101 372.9 419 51.3
Carub.0006s2627 Capsella rubella HOM05D004702 ORTHO05D005505 4.3e-100 369.4 512 45.7
BcaB01g01331 Brassica carinata HOM05D004702 ORTHO05D005505 2.0e-97 360.5 514 44.2
BraSC37t46123Z Brassica rapa HOM05D004702 ORTHO05D005505 8.4e-96 355.1 520 44.0
A10p08810 Brassica napus HOM05D004702 ORTHO05D005505 1.9e-95 354.0 520 43.8
Haze_18006 Corylus avellana HOM05D004702 ORTHO05D005505 1.9e-92 344.0 410 52.0
Ca_13276_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 2.5e-92 343.6 303 60.1
C09p38410 Brassica napus HOM05D004702 ORTHO05D005505 1.4e-90 337.8 513 43.3
Atru.chr13.733 Acer truncatum HOM05D004702 ORTHO05D005505 3.1e-90 336.7 202 81.7
Ah.11g043030 Amaranthus hybridus HOM05D004702 ORTHO05D005505 4.0e-90 336.3 488 42.0
GSVIVG01009450001 Vitis vinifera HOM05D004702 ORTHO05D005505 4.4e-89 332.8 201 81.1
unitig_8.g5031 Utricularia gibba HOM05D004702 ORTHO05D005505 8.7e-85 318.5 489 43.6
SGA_v2.0_scaffold197G41020 Striga asiatica HOM05D004702 ORTHO05D005505 1.8e-82 310.8 487 42.3
CDE01G0679 Ceratophyllum demersum HOM05D004702 ORTHO05D005505 1.2e-81 308.1 483 39.8
Lalb_Chr23g0267231 Lupinus albus HOM05D004702 ORTHO05D005505 1.2e-78 298.1 238 63.9
SalBow6G2833 Salvia bowleyana HOM05D004702 ORTHO05D005505 1.0e-77 295.0 480 39.6
SalBow6G7027 Salvia bowleyana HOM05D004702 ORTHO05D005505 2.3e-77 293.9 480 39.4
Migut.N02734 Erythranthe guttata HOM05D004702 ORTHO05D005505 3.9e-77 293.1 457 39.4
HPP92_017369 Vanilla planifolia HOM05D004702 ORTHO05D005505 1.8e-74 284.3 503 35.6
Zm00001eb247120 Zea mays HOM05D004702 ORTHO05D005505 3.4e-73 280.0 518 34.7
ATR0762G037 Amborella trichopoda HOM05D004702 ORTHO05D005505 4.5e-73 279.6 363 45.7
SEGI_05734 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 4.9e-72 276.2 418 40.2
SEGI_36308 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.6e-67 261.2 516 34.9
SEGI_19446 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 4.8e-67 259.6 509 36.1
Lsat_1_v5_gn_4_127260 Lactuca sativa HOM05D004702 ORTHO05D005505 1.4e-66 258.1 206 66.0
HPP92_010365 Vanilla planifolia HOM05D004702 ORTHO05D005505 1.3e-59 235.0 483 32.9
AagrBONN_evm.TU.Sc2ySwM_228.394 Anthoceros agrestis HOM05D004702 ORTHO05D005505 9.0e-58 228.8 421 35.2
SEGI_03871 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.2e-57 228.4 412 38.6
Psat0s3398g0240 Pisum sativum HOM05D004702 ORTHO05D005505 5.0e-56 223.0 158 66.5
Pp3c15_17100 Physcomitrium patens HOM05D004702 ORTHO05D005505 5.5e-55 219.5 453 34.4
arahy.Tifrunner.gnm1.ann1.7E6QIB Arachis hypogaea HOM05D004702 ORTHO05D005505 1.3e-53 214.9 170 65.3
arahy.Tifrunner.gnm1.ann1.7V26PZ Arachis hypogaea HOM05D004702 ORTHO05D005505 1.3e-53 214.9 170 65.3
SEGI_12847 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.8e-53 214.5 442 35.3
AT4G06534 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 2.4e-50 204.1 344 41.3
SMO145G0126 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 6.1e-46 189.5 438 32.6
AT4G06536 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 1.4e-45 188.3 171 56.7
CARHR264230 Cardamine hirsuta HOM05D004702 ORTHO05D005505 1.1e-44 185.3 170 54.7
Sp6g10670 Schrenkiella parvula HOM05D004702 ORTHO05D005505 4.4e-44 183.3 350 37.7
Sp6g10680 Schrenkiella parvula HOM05D004702 ORTHO05D005505 9.7e-44 182.2 174 53.4
AUR62044714 Chenopodium quinoa HOM05D004702 ORTHO05D005505 4.5e-41 173.3 271 42.4
AUR62044709 Chenopodium quinoa HOM05D004702 ORTHO05D005505 1.3e-40 171.8 327 39.1
Psat0s3398g0080 Pisum sativum HOM05D004702 ORTHO05D005505 1.7e-40 171.4 111 70.3
SMO112G0032 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 1.5e-36 158.3 395 32.7
Os02g0614700 Oryza sativa ssp. japonica HOM05D004702 ORTHO05D005505 4.4e-36 156.8 161 44.1
Nn7g37290 Nelumbo nucifera HOM05D004702 ORTHO05D005505 5.3e-34 149.8 154 50.0
CBR_g733 Chara braunii HOM05D004702 ORTHO05D005505 3.0e-21 107.5 264 31.4
Glyma.15G095100 Glycine max HOM05D004702 ORTHO05D005505 4.0e-21 107.1 99 56.6
SMO364G0277 Selaginella moellendorffii HOM05D051657 ORTHO05D005505 5.4e-10 70.1 125 36.0


User provided reference genes

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