Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_03426 Corchorus olitorius HOM05D007326 ORTHO05D009048 1.4e-54 216.1 115 100.0
Duzib205G1092 Durio zibethinus HOM05D007326 ORTHO05D009048 9.9e-40 166.8 117 78.6
Thecc.03G195600 Theobroma cacao HOM05D007326 ORTHO05D009048 3.1e-33 145.2 119 68.9
Gohir.A11G014200 Gossypium hirsutum HOM05D007326 ORTHO05D009048 4.5e-32 141.4 117 69.2
Gohir.D11G014400 Gossypium hirsutum HOM05D007326 ORTHO05D009048 1.0e-31 140.2 117 68.4
Gorai.007G014800 Gossypium raimondii HOM05D007326 ORTHO05D009048 1.0e-31 140.2 117 68.4
Atru.chr1.147 Acer truncatum HOM05D007326 ORTHO05D009048 1.6e-18 96.3 119 54.6
CiPaw.06G009800 Carya illinoinensis HOM05D007326 ORTHO05D009048 2.4e-17 92.4 119 50.4
Ciclev10006260m.g Citrus clementina HOM05D007326 ORTHO05D009048 1.2e-16 90.1 119 52.1
Manes.06G159200 Manihot esculenta HOM05D007326 ORTHO05D009048 2.0e-16 89.4 121 52.1
TAR629G0302 Trochodendron aralioides HOM05D007326 ORTHO05D009048 2.0e-16 89.4 119 51.3
vmacro06547 Vaccinium macrocarpon HOM05D007326 ORTHO05D009048 2.0e-16 89.4 113 52.2
Glyma.09G190100 Glycine max HOM05D007326 ORTHO05D009048 4.5e-16 88.2 89 56.2
TWI23G0901 Tripterygium wilfordii HOM05D007326 ORTHO05D009048 7.7e-16 87.4 115 50.4
Glyma.07G086800 Glycine max HOM05D007326 ORTHO05D009048 2.9e-15 85.5 94 56.4
PGSC0003DMG400009118 Solanum tuberosum HOM05D007326 ORTHO05D009048 8.5e-15 84.0 96 51.0
Rhsim09G0011500 Rhododendron simsii HOM05D007326 ORTHO05D009048 2.5e-14 82.4 116 49.1
VMungo0464G1195 Vigna mungo HOM05D007326 ORTHO05D009048 3.2e-14 82.0 91 54.9
Nn4g24310 Nelumbo nucifera HOM05D000291 ORTHO05D009048 7.2e-14 80.9 118 48.3
Nitab4.5_0002492g0030 Nicotiana tabacum HOM05D007326 ORTHO05D009048 1.6e-13 79.7 120 45.0
CANSAT21G2203 Cannabis sativa HOM05D007326 ORTHO05D009048 6.1e-13 77.8 110 49.1
Haze_14278 Corylus avellana HOM05D007326 ORTHO05D009048 7.9e-13 77.4 118 42.4
Dinv29296 Davidia involucrata HOM05D007326 ORTHO05D009048 7.9e-13 77.4 88 52.3
Prupe.2G311900 Prunus persica HOM05D007326 ORTHO05D009048 7.9e-13 77.4 111 48.6
Nitab4.5_0000714g0090 Nicotiana tabacum HOM05D007326 ORTHO05D009048 1.4e-12 76.6 98 48.0
CAN.G108.61 Capsicum annuum HOM05D007326 ORTHO05D009048 1.8e-12 76.3 90 51.1
Actinidia06160 Actinidia chinensis HOM05D007326 ORTHO05D009048 3.0e-12 75.5 106 50.0
Solyc03g083450.1 Solanum lycopersicum HOM05D007326 ORTHO05D009048 3.0e-12 75.5 96 51.0
ClCG01G000490 Citrullus lanatus HOM05D007326 ORTHO05D009048 3.9e-12 75.1 112 45.5
Potri.015G017700 Populus trichocarpa HOM05D007326 ORTHO05D009048 6.7e-12 74.3 111 40.5
MSTRG.55 Avicennia marina HOM05D007326 ORTHO05D009048 8.8e-12 73.9 89 52.8
ECA232G0297 Erigeron canadensis HOM05D007326 ORTHO05D009048 8.8e-12 73.9 100 45.0
CSS0025602 Camellia sinensis var. sinensis HOM05D007326 ORTHO05D009048 1.5e-11 73.2 114 45.6
Ah.04g150610 Amaranthus hybridus HOM05D007326 ORTHO05D009048 2.0e-11 72.8 36 83.3
ATR0762G055 Amborella trichopoda HOM05D007326 ORTHO05D009048 2.5e-11 72.4 79 53.2
Peaxi162Scf00550g00426 Petunia axillaris HOM05D007326 ORTHO05D009048 2.5e-11 72.4 98 50.0
Hma1.2p1_0538F.1_g174400 Hydrangea macrophylla HOM05D007326 ORTHO05D009048 3.3e-11 72.0 121 46.3
Manes.05G205250 Manihot esculenta HOM05D007326 ORTHO05D009048 3.3e-11 72.0 42 78.6
Sopen03g023220 Solanum pennellii HOM05D007326 ORTHO05D009048 3.3e-11 72.0 95 50.5
TPR.G1327 Trifolium pratense HOM05D007326 ORTHO05D009048 3.3e-11 72.0 85 51.8
TPR.G14875 Trifolium pratense HOM05D007326 ORTHO05D009048 3.3e-11 72.0 115 43.5
CSS0006442 Camellia sinensis var. sinensis HOM05D007326 ORTHO05D009048 4.3e-11 71.6 117 43.6
Lsat_1_v5_gn_9_58181 Lactuca sativa HOM05D007326 ORTHO05D009048 5.7e-11 71.2 110 49.1
Cpa.g.sc3.64 Carica papaya HOM05D007326 ORTHO05D009048 9.7e-11 70.5 127 44.9
Medtr3g109290 Medicago truncatula HOM05D007326 ORTHO05D009048 9.7e-11 70.5 32 93.8
Sed0023316 Sechium edule HOM05D007326 ORTHO05D009048 1.3e-10 70.1 117 47.9
ATR0037G036 Amborella trichopoda HOM05D007326 ORTHO05D009048 2.2e-10 69.3 81 50.6
Os06g0157800 Oryza sativa ssp. japonica HOM05D007326 ORTHO05D009048 6.3e-10 67.8 34 79.4
Zm00001eb376510 Zea mays HOM05D007326 ORTHO05D009048 6.3e-10 67.8 39 76.9
THA.LOC104819263 Tarenaya hassleriana HOM05D007326 ORTHO05D009048 8.2e-10 67.4 62 58.1
Actinidia06159 Actinidia chinensis HOM05D007326 ORTHO05D009048 1.1e-09 67.0 122 43.4
Phvul.004G162900 Phaseolus vulgaris HOM05D007326 ORTHO05D009048 1.1e-09 67.0 30 93.3
Actinidia06153 Actinidia chinensis HOM05D003276 ORTHO05D003809 1.4e-09 66.6 109 42.2
Psat0s2030g0040 Pisum sativum HOM05D007326 ORTHO05D009048 1.4e-09 66.6 106 47.2
SGA_v2.0_scaffold105G30435 Striga asiatica HOM05D007326 ORTHO05D009048 2.4e-09 65.9 87 50.6
BcaB02g09919 Brassica carinata HOM05D007326 ORTHO05D009048 3.1e-09 65.5 35 74.3
Oeu037093.1 Olea europaea HOM05D007326 ORTHO05D009048 3.1e-09 65.5 88 45.5
SGA_v2.0_scaffold55G19762 Striga asiatica HOM05D007326 ORTHO05D009048 3.1e-09 65.5 95 49.5
AL8G43810 Arabidopsis lyrata HOM05D007326 ORTHO05D009048 4.1e-09 65.1 34 76.5
MBI06_g08457_MAGBIO Magnolia biondii HOM05D007326 ORTHO05D009048 4.1e-09 65.1 87 52.9
Nitab4.5_0000714g0080 Nicotiana tabacum HOM05D001433 ORTHO05D009048 4.1e-09 65.1 95 43.2
MELO3C005879.2 Cucumis melo HOM05D007326 ORTHO05D009048 5.3e-09 64.7 117 44.4
TAR375G0672 Trochodendron aralioides HOM05D007326 ORTHO05D009048 6.9e-09 64.3 81 50.6
AUR62013031 Chenopodium quinoa HOM05D007326 ORTHO05D009048 9.1e-09 63.9 117 45.3
QL09p009621 Quercus lobata HOM05D007326 ORTHO05D009048 1.2e-08 63.5 87 47.1
arahy.Tifrunner.gnm1.ann1.8E5M3M Arachis hypogaea HOM05D007326 ORTHO05D009048 1.5e-08 63.2 104 49.0
Lj1g0012737 Lotus japonicus HOM05D007326 ORTHO05D009048 1.5e-08 63.2 72 52.8
Ca_15635_v3 Cicer arietinum L. HOM05D007326 ORTHO05D009048 3.4e-08 62.0 95 46.3
Aa31LG1G16060 Aethionema arabicum HOM05D007326 ORTHO05D009048 4.5e-08 61.6 97 45.4
AUR62010038 Chenopodium quinoa HOM05D007326 ORTHO05D009048 4.5e-08 61.6 118 44.1
arahy.Tifrunner.gnm1.ann1.SUR8QF Arachis hypogaea HOM05D007326 ORTHO05D009048 5.9e-08 61.2 108 46.3
Thhalv10005175m.g Eutrema salsugineum HOM05D007326 ORTHO05D009048 1.3e-07 60.1 91 46.2
HPP92_020021 Vanilla planifolia HOM05D007326 ORTHO05D009048 1.3e-07 60.1 86 50.0
PGR042G3637 Punica granatum HOM05D007326 ORTHO05D009048 1.7e-07 59.7 86 47.7
RcHm_v2.0_Chr1g0381021 Rosa chinensis HOM05D007326 ORTHO05D009048 1.7e-07 59.7 84 50.0
Aqoxy7G00103 Aquilegia oxysepala HOM05D007326 ORTHO05D009048 2.2e-07 59.3 121 38.8
Oeu030278.1 Olea europaea HOM05D007326 ORTHO05D009048 2.2e-07 59.3 92 42.4
Pp3c23_5100 Physcomitrium patens HOM05D007326 ORTHO05D009048 2.2e-07 59.3 67 50.7
CsaV3_5G000570 Cucumis sativus L. HOM05D007326 ORTHO05D009048 3.8e-07 58.5 112 41.1
FAN06G2911 Fragaria x ananassa HOM05D007326 ORTHO05D009048 5.0e-07 58.2 84 53.6
unitig_8.g3560 Utricularia gibba HOM05D000146 ORTHO05D000178 5.0e-07 58.2 93 45.2
CDE05G0016 Ceratophyllum demersum HOM05D007326 ORTHO05D009048 6.5e-07 57.8 90 43.3
Sc03g0007330 Simmondsia chinensis HOM05D007326 ORTHO05D009048 6.5e-07 57.8 96 42.7
Eucgr.A01472 Eucalyptus grandis HOM05D007326 ORTHO05D009048 8.5e-07 57.4 123 35.0
Rhsim03G0206100 Rhododendron simsii HOM05D043765 ORTHO05D009048 8.5e-07 57.4 102 44.1
FAN10G1221 Fragaria x ananassa HOM05D007326 ORTHO05D009048 4.2e-06 55.1 90 44.4
AT5G67490 Arabidopsis thaliana HOM05D007326 ORTHO05D009048 5.5e-06 54.7 85 41.2
FvH4_7g31800 Fragaria vesca HOM05D000354 ORTHO05D000717 5.5e-06 54.7 71 53.5
TAR629G2746 Trochodendron aralioides HOM05D007326 ORTHO05D009048 5.5e-06 54.7 37 64.9
EL10Ac9g21379 Beta vulgaris HOM05D007326 ORTHO05D009048 9.4e-06 53.9 95 44.2
A06p32910 Brassica napus HOM05D007326 ORTHO05D009048 9.4e-06 53.9 97 42.3
BraA06t26223Z Brassica rapa HOM05D007326 ORTHO05D009048 9.4e-06 53.9 97 42.3
Mapoly0007s0050 Marchantia polymorpha HOM05D007326 ORTHO05D009048 9.4e-06 53.9 83 42.2
Rhsim03G0207100 Rhododendron simsii HOM05D043765 ORTHO05D009048 9.4e-06 53.9 94 45.7
SEGI_38766 Sequoiadendron giganteum HOM05D007326 ORTHO05D009048 9.4e-06 53.9 99 39.4


User provided reference genes

Program Settings