Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_03377 Corchorus olitorius HOM05D004682 ORTHO05D006197 2.1e-32 142.1 93 100.0
COL.COLO4_08044 Corchorus olitorius HOM05D004682 ORTHO05D006197 1.1e-20 103.2 89 86.5
Thecc.01G288600 Theobroma cacao HOM05D004682 ORTHO05D006197 8.6e-18 93.6 89 80.9
Duzib138G0788 Durio zibethinus HOM05D004682 ORTHO05D006197 5.6e-17 90.9 89 77.5
QL12p023612 Quercus lobata HOM05D004682 ORTHO05D006197 6.2e-16 87.4 78 73.1
QL12p023658 Quercus lobata HOM05D004682 ORTHO05D006197 6.2e-16 87.4 78 67.9
Atru.chr5.1294 Acer truncatum HOM05D004682 ORTHO05D006197 8.4e-13 77.0 87 66.7
Hma1.2p1_0399F.1_g144330 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 1.1e-12 76.6 89 57.3
CSS0044691 Camellia sinensis var. sinensis HOM05D004682 ORTHO05D006197 1.9e-12 75.9 88 54.5
Hma1.2p1_0399F.1_g144320 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 4.2e-12 74.7 78 60.3
Gohir.A11G118700 Gossypium hirsutum HOM05D004682 ORTHO05D006197 9.3e-12 73.6 77 55.8
Lj2A1184G69 Lonicera japonica HOM05D004682 ORTHO05D006197 9.3e-12 73.6 77 55.8
VMungo1383G2773 Vigna mungo HOM05D004682 ORTHO05D006197 1.2e-11 73.2 86 51.2
MSTRG.18200 Avicennia marina HOM05D004682 ORTHO05D006197 1.6e-11 72.8 88 53.4
Phvul.001G201200 Phaseolus vulgaris HOM05D004682 ORTHO05D006197 2.1e-11 72.4 86 52.3
Hma1.2p1_1049F.1_g251890 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 2.7e-11 72.0 76 60.5
Actinidia00705 Actinidia chinensis HOM05D004682 ORTHO05D006197 4.6e-11 71.2 79 65.8
Gohir.D11G123600 Gossypium hirsutum HOM05D004682 ORTHO05D006197 6.0e-11 70.9 77 67.5
Gorai.007G132500 Gossypium raimondii HOM05D004682 ORTHO05D006197 6.0e-11 70.9 77 67.5
Haze_04797 Corylus avellana HOM05D004682 ORTHO05D006197 7.8e-11 70.5 76 63.2
RcHm_v2.0_Chr6g0292391 Rosa chinensis HOM05D004682 ORTHO05D006197 1.3e-10 69.7 82 69.5
CANSAT25G1381 Cannabis sativa HOM05D004682 ORTHO05D006197 1.7e-10 69.3 86 47.7
Prupe.8G250900 Prunus persica HOM05D004682 ORTHO05D006197 3.0e-10 68.6 79 72.2
CiPaw.07G098500 Carya illinoinensis HOM05D004682 ORTHO05D006197 3.9e-10 68.2 89 64.0
Oeu002696.1 Olea europaea HOM05D004682 ORTHO05D006197 5.1e-10 67.8 90 48.9
ECA247G2915 Erigeron canadensis HOM05D004682 ORTHO05D006197 6.6e-10 67.4 78 51.3
Eucgr.K03425 Eucalyptus grandis HOM05D004682 ORTHO05D006197 1.1e-09 66.6 80 61.2
FAN27G0404 Fragaria x ananassa HOM05D004682 ORTHO05D006197 1.5e-09 66.2 86 66.3
SalBow3G2371 Salvia bowleyana HOM05D004682 ORTHO05D006197 2.5e-09 65.5 80 48.8
Cpa.g.sc9.149 Carica papaya HOM05D004682 ORTHO05D006197 3.3e-09 65.1 76 50.0
arahy.Tifrunner.gnm1.ann1.BJ6WT1 Arachis hypogaea HOM05D004682 ORTHO05D006197 5.6e-09 64.3 81 50.6
arahy.Tifrunner.gnm1.ann1.SJK0SQ Arachis hypogaea HOM05D004682 ORTHO05D006197 5.6e-09 64.3 81 50.6
PSO170G5080 Papaver somniferum HOM05D004682 ORTHO05D006197 5.6e-09 64.3 78 56.4
Glyma.03G207600 Glycine max HOM05D004682 ORTHO05D006197 7.3e-09 63.9 89 51.7
Solyc05g026510.4 Solanum lycopersicum HOM05D004682 ORTHO05D006197 7.3e-09 63.9 75 46.7
Sopen05g022990 Solanum pennellii HOM05D004682 ORTHO05D006197 7.3e-09 63.9 75 46.7
FAN15G3206 Fragaria x ananassa HOM05D004682 ORTHO05D006197 9.6e-09 63.5 84 66.7
Ciclev10018593m.g Citrus clementina HOM05D004682 ORTHO05D006197 1.6e-08 62.8 89 58.4
FAN20G1430 Fragaria x ananassa HOM05D004682 ORTHO05D006197 2.1e-08 62.4 80 68.8
CsaV3_1G038120 Cucumis sativus L. HOM05D004682 ORTHO05D006197 3.6e-08 61.6 80 55.0
Potri.002G230800 Populus trichocarpa HOM05D004682 ORTHO05D006197 3.6e-08 61.6 79 67.1
SGA_v2.0_scaffold1G00427 Striga asiatica HOM05D004682 ORTHO05D006197 8.1e-08 60.5 77 46.8
TAR633G2734 Trochodendron aralioides HOM05D004682 ORTHO05D006197 8.1e-08 60.5 89 62.9
CAN.G13.21 Capsicum annuum HOM05D004682 ORTHO05D006197 1.1e-07 60.1 73 46.6
AUR62013599 Chenopodium quinoa HOM05D004682 ORTHO05D006197 1.1e-07 60.1 77 45.5
FAN24G1905 Fragaria x ananassa HOM05D004682 ORTHO05D006197 1.1e-07 60.1 84 66.7
Psat3g025520 Pisum sativum HOM05D004682 ORTHO05D006197 1.1e-07 60.1 79 48.1
TWI59G0906 Tripterygium wilfordii HOM05D004682 ORTHO05D006197 3.1e-07 58.5 85 65.9
Ca_09103_v3 Cicer arietinum L. HOM05D004682 ORTHO05D006197 4.0e-07 58.2 71 49.3
Nn3g21239 Nelumbo nucifera HOM05D004682 ORTHO05D006197 4.0e-07 58.2 87 55.2
PGR044G1334 Punica granatum HOM05D004682 ORTHO05D006197 5.3e-07 57.8 80 63.8
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 6.9e-07 57.4 89 61.8
FvH4_2g24570 Fragaria vesca HOM05D004682 ORTHO05D006197 6.9e-07 57.4 84 65.5
MD11G1296700 Malus domestica HOM05D004682 ORTHO05D006197 6.9e-07 57.4 80 65.0
Aqoxy2G03153 Aquilegia oxysepala HOM05D004682 ORTHO05D006197 9.0e-07 57.0 89 43.8
Nitab4.5_0000135g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 9.0e-07 57.0 84 41.7
PGSC0003DMG402015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 9.0e-07 57.0 73 45.2
AUR62026692 Chenopodium quinoa HOM05D004682 ORTHO05D006197 1.2e-06 56.6 78 46.2
Lalb_Chr25g0287581 Lupinus albus HOM05D004682 ORTHO05D006197 1.2e-06 56.6 72 58.3
HanXRQChr10g0283031 Helianthus annuus HOM05D004682 ORTHO05D006197 2.0e-06 55.8 91 50.5
Lalb_Chr20g0111011 Lupinus albus HOM05D004682 ORTHO05D006197 2.6e-06 55.5 71 52.1
Nitab4.5_0000282g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 4.4e-06 54.7 72 43.1
vmacro02515 Vaccinium macrocarpon HOM05D004682 ORTHO05D006197 7.6e-06 53.9 82 50.0


User provided reference genes

Program Settings