Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_03213 Corchorus olitorius HOM05D001966 ORTHO05D010986 4.9e-87 324.3 151 100.0
BolSC49t61132H Brassica oleracea HOM05D001966 ORTHO05D010986 1.0e-44 183.7 105 88.6
Hma1.2p1_0594F.1_g185800 Hydrangea macrophylla HOM05D001966 ORTHO05D010986 1.9e-43 179.5 129 72.9
FAN26G1474 Fragaria x ananassa HOM05D001966 ORTHO05D010986 2.5e-43 179.1 130 72.3
BcaNung07085 Brassica carinata HOM05D001966 ORTHO05D010449 4.1e-41 171.8 190 52.6
BcaB02g11353 Brassica carinata HOM05D007952 ORTHO05D009823 2.2e-39 166.0 189 51.9
arahy.Tifrunner.gnm1.ann1.ZMH4QB Arachis hypogaea HOM05D001966 ORTHO05D010986 5.7e-35 151.4 132 62.1
BolSC29t60538H Brassica oleracea HOM05D008016 ORTHO05D010986 1.4e-33 146.7 86 84.9
ClCG02G009760 Citrullus lanatus HOM05D001966 ORTHO05D000002 5.3e-33 144.8 139 58.3
CsaV3_UNG196500 Cucumis sativus L. HOM05D001966 ORTHO05D010986 5.9e-32 141.4 79 87.3
Sed0007694 Sechium edule HOM05D001966 ORTHO05D010986 5.9e-32 141.4 79 87.3
Sed0023467 Sechium edule HOM05D001966 ORTHO05D010986 5.9e-32 141.4 79 87.3
Sed0025793 Sechium edule HOM05D001966 ORTHO05D010986 5.9e-32 141.4 79 87.3
Cfa023005 Carpinus fangiana HOM05D001966 ORTHO05D010986 8.5e-31 137.5 67 95.5
Aqoxy38s012 Aquilegia oxysepala HOM05D001966 ORTHO05D010986 4.2e-30 135.2 79 83.5
Aqoxy4G02030 Aquilegia oxysepala HOM05D001966 ORTHO05D010986 4.2e-30 135.2 79 83.5
CARHR282380 Cardamine hirsuta HOM05D001966 ORTHO05D010986 1.2e-29 133.7 73 87.7
CARHR282500 Cardamine hirsuta HOM05D001966 ORTHO05D010986 1.2e-29 133.7 73 87.7
Cpa.g.sc23.86 Carica papaya HOM05D001966 ORTHO05D010986 2.1e-29 132.9 66 93.9
SHI27036 Sapria himalayana HOM05D001966 ORTHO05D010986 2.3e-28 129.4 118 61.0
Sc25g0002010 Simmondsia chinensis HOM05D001966 ORTHO05D007227 2.3e-28 129.4 74 85.1
arahy.Tifrunner.gnm1.ann1.FN06MZ Arachis hypogaea HOM05D000533 ORTHO05D006151 3.3e-27 125.6 102 64.7
Sed0001789 Sechium edule HOM05D001966 ORTHO05D010986 5.7e-27 124.8 73 83.6
Sc05g0004140 Simmondsia chinensis HOM05D001966 ORTHO05D011119 1.3e-26 123.6 74 81.1
arahy.Tifrunner.gnm1.ann1.LY649L Arachis hypogaea HOM05D001966 ORTHO05D010986 1.1e-25 120.6 59 93.2
VMungo1233G0001 Vigna mungo HOM05D001966 ORTHO05D010986 1.1e-25 120.6 62 90.3
Lsat_1_v5_gn_2_20521 Lactuca sativa HOM05D001966 ORTHO05D007227 2.4e-25 119.4 121 54.5
Lsat_1_v5_gn_5_181880 Lactuca sativa HOM05D001966 ORTHO05D007227 2.4e-25 119.4 121 54.5
AL9U11930 Arabidopsis lyrata HOM05D001966 ORTHO05D007227 3.4e-24 115.5 64 85.9
Solyc11g021160.1 Solanum lycopersicum HOM05D001966 ORTHO05D010055 2.2e-23 112.8 85 65.9
arahy.Tifrunner.gnm1.ann1.WI2XKB Arachis hypogaea HOM05D001966 ORTHO05D007227 8.5e-23 110.9 111 55.9
arahy.Tifrunner.gnm1.ann1.92D98S Arachis hypogaea HOM05D000533 ORTHO05D006151 2.7e-21 105.9 52 92.3
arahy.Tifrunner.gnm1.ann1.JR5HFJ Arachis hypogaea HOM05D000533 ORTHO05D006151 2.7e-21 105.9 52 92.3
arahy.Tifrunner.gnm1.ann1.8D90VP Arachis hypogaea HOM05D001966 ORTHO05D007227 1.4e-20 103.6 113 52.2
Lsat_1_v5_gn_9_39281 Lactuca sativa HOM05D001966 ORTHO05D007227 1.7e-18 96.7 58 81.0
Nitab4.5_0005831g0030 Nicotiana tabacum HOM05D001090 ORTHO05D006167 1.7e-18 96.7 47 93.6
Sopen10g016570 Solanum pennellii HOM05D008037 ORTHO05D004271 1.7e-18 96.7 110 51.8
Lsat_1_v5_gn_3_110440 Lactuca sativa HOM05D001966 ORTHO05D007227 2.8e-18 95.9 47 93.6
Lsat_1_v5_gn_6_94301 Lactuca sativa HOM05D001966 ORTHO05D007227 2.8e-18 95.9 47 93.6
arahy.Tifrunner.gnm1.ann1.JURL6Q Arachis hypogaea HOM05D001966 ORTHO05D007227 2.4e-17 92.8 114 47.4
Nitab4.5_0012234g0020 Nicotiana tabacum HOM05D008016 ORTHO05D010055 4.1e-17 92.0 57 77.2
SHI36395 Sapria himalayana HOM05D001966 ORTHO05D010986 5.3e-17 91.7 47 87.2
arahy.Tifrunner.gnm1.ann1.KJ09M7 Arachis hypogaea HOM05D008037 ORTHO05D004271 7.0e-17 91.3 133 42.1
SHI26755 Sapria himalayana HOM05D001966 ORTHO05D010986 1.2e-16 90.5 61 72.1
arahy.Tifrunner.gnm1.ann1.DY3820 Arachis hypogaea HOM05D000445 ORTHO05D010986 5.0e-15 85.1 41 92.7
CAN.G100.35 Capsicum annuum HOM05D008016 ORTHO05D010588 5.0e-15 85.1 55 70.9
arahy.Tifrunner.gnm1.ann1.X4EL03 Arachis hypogaea HOM05D001966 ORTHO05D010986 6.5e-15 84.7 47 85.1
Nitab4.5_0001170g0070 Nicotiana tabacum HOM05D008037 ORTHO05D004271 1.5e-14 83.6 131 43.5
Nitab4.5_0001727g0120 Nicotiana tabacum HOM05D008016 ORTHO05D010055 1.5e-14 83.6 61 68.9
ClCG11G009640 Citrullus lanatus HOM05D008354 ORTHO05D010055 1.9e-14 83.2 46 87.0
Nitab4.5_0000002g0300 Nicotiana tabacum HOM05D001966 ORTHO05D010055 1.9e-14 83.2 104 48.1
Nitab4.5_0001249g0070 Nicotiana tabacum HOM05D008016 ORTHO05D010588 3.2e-14 82.4 44 86.4
BcaC04g20781 Brassica carinata HOM05D001966 ORTHO05D010449 4.2e-14 82.0 37 94.6
Nitab4.5_0004137g0030 Nicotiana tabacum HOM05D008354 ORTHO05D010055 7.2e-14 81.3 59 71.2
FAN26G0971 Fragaria x ananassa HOM05D008037 ORTHO05D004271 3.6e-13 79.0 38 94.7
arahy.Tifrunner.gnm1.ann1.20TFSQ Arachis hypogaea HOM05D008037 ORTHO05D004271 8.0e-13 77.8 35 94.3
arahy.Tifrunner.gnm1.ann1.LBLK2X Arachis hypogaea HOM05D008037 ORTHO05D004271 8.0e-13 77.8 35 94.3
arahy.Tifrunner.gnm1.ann1.P2FSG5 Arachis hypogaea HOM05D008037 ORTHO05D004271 8.0e-13 77.8 35 94.3
ClCG09G021430 Citrullus lanatus HOM05D001966 ORTHO05D010986 2.3e-12 76.3 51 76.5
RcHm_v2.0_Chr2g0095251 Rosa chinensis HOM05D008016 ORTHO05D004271 3.0e-12 75.9 33 97.0
RcHm_v2.0_Chr7g0221131 Rosa chinensis HOM05D008016 ORTHO05D004271 3.0e-12 75.9 38 89.5
arahy.Tifrunner.gnm1.ann1.ASR258 Arachis hypogaea HOM05D008037 ORTHO05D004271 4.0e-12 75.5 35 91.4
DCAR_024575 Daucus carota HOM05D008354 ORTHO05D010055 4.0e-12 75.5 56 69.6
Oeu040617.1 Olea europaea HOM05D008016 ORTHO05D004271 4.0e-12 75.5 49 75.5
vmacro22395 Vaccinium macrocarpon HOM05D008016 ORTHO05D004271 5.2e-12 75.1 112 41.1
arahy.Tifrunner.gnm1.ann1.WFJR7S Arachis hypogaea HOM05D008037 ORTHO05D004271 6.7e-12 74.7 35 91.4
COL.COLO4_33462 Corchorus olitorius HOM05D008016 ORTHO05D004271 6.7e-12 74.7 36 88.9
Sed0008904 Sechium edule HOM05D001966 ORTHO05D007227 8.8e-12 74.3 36 94.4
Sed0021589 Sechium edule HOM05D008016 ORTHO05D004271 8.8e-12 74.3 36 91.7
Nitab4.5_0005831g0120 Nicotiana tabacum HOM05D008354 ORTHO05D010055 2.6e-11 72.8 34 91.2
FAN22G1916 Fragaria x ananassa HOM05D008037 ORTHO05D004271 3.3e-11 72.4 32 96.9
Sc05g0004050 Simmondsia chinensis HOM05D001966 ORTHO05D007227 3.3e-11 72.4 48 68.8
C02p28730 Brassica napus HOM05D008016 ORTHO05D010588 7.5e-11 71.2 41 80.5
Nitab4.5_0006502g0080 Nicotiana tabacum HOM05D001966 ORTHO05D010986 7.5e-11 71.2 45 77.8
vmacro22420 Vaccinium macrocarpon HOM05D008016 ORTHO05D010055 9.7e-11 70.9 129 37.2
CSS0015594 Camellia sinensis var. sinensis HOM05D001966 ORTHO05D010986 2.2e-10 69.7 59 64.4
FAN01G2668 Fragaria x ananassa HOM05D001966 ORTHO05D007227 2.2e-10 69.7 49 73.5
arahy.Tifrunner.gnm1.ann1.MCF6CI Arachis hypogaea HOM05D001966 ORTHO05D010986 2.8e-10 69.3 35 88.6
Gohir.D07G151450 Gossypium hirsutum HOM05D008016 ORTHO05D004271 4.8e-10 68.6 48 64.6
Peaxi162Scf00994g00002 Petunia axillaris HOM05D001966 ORTHO05D010986 8.2e-10 67.8 48 72.9
CAN.G1346.2 Capsicum annuum HOM05D001966 ORTHO05D010588 1.4e-09 67.0 33 93.9
Medtr4g006040 Medicago truncatula HOM05D008037 ORTHO05D009823 1.4e-09 67.0 28 100.0
Nitab4.5_0004137g0080 Nicotiana tabacum HOM05D001966 ORTHO05D010986 2.4e-09 66.2 56 62.5
Nitab4.5_0009355g0010 Nicotiana tabacum HOM05D001966 ORTHO05D010986 5.3e-09 65.1 36 86.1
Nitab4.5_0001761g0140 Nicotiana tabacum HOM05D001966 ORTHO05D010986 1.2e-08 63.9 37 81.1
VMungo0464G1535 Vigna mungo HOM05D001966 ORTHO05D007227 1.2e-08 63.9 34 85.3
Peaxi162Scf01600g00007 Petunia axillaris HOM05D001966 ORTHO05D010986 1.6e-08 63.5 48 68.8
Lsat_1_v5_gn_4_147680 Lactuca sativa HOM05D001966 ORTHO05D007227 2.0e-08 63.2 37 78.4
EL10As10g23965 Beta vulgaris HOM05D001966 ORTHO05D007227 2.7e-08 62.8 52 63.5
Nitab4.5_0001986g0110 Nicotiana tabacum HOM05D001966 ORTHO05D010986 4.5e-08 62.0 37 81.1
Lalb_Chr17g0346961 Lupinus albus HOM05D008016 ORTHO05D010588 5.9e-08 61.6 43 69.8
CsaV3_UNG196490 Cucumis sativus L. HOM05D008016 ORTHO05D010588 7.7e-08 61.2 61 52.5
Nitab4.5_0007400g0150 Nicotiana tabacum HOM05D001966 ORTHO05D010986 1.7e-07 60.1 45 66.7
Lalb_Chr08g0236231 Lupinus albus HOM05D001966 ORTHO05D010986 2.9e-07 59.3 32 84.4
Lalb_Chr24g0400891 Lupinus albus HOM05D001966 ORTHO05D010986 2.9e-07 59.3 32 84.4
MD03G1269900 Malus domestica HOM05D008037 ORTHO05D004271 2.9e-07 59.3 37 75.7
Nitab4.5_0012234g0090 Nicotiana tabacum HOM05D001966 ORTHO05D010986 3.8e-07 58.9 37 78.4
arahy.Tifrunner.gnm1.ann1.FN7561 Arachis hypogaea HOM05D001966 ORTHO05D007227 5.0e-07 58.5 33 78.8
BNapus_Darmor_BZH_scaffold_69p00020 Brassica napus HOM05D008016 ORTHO05D010588 1.1e-06 57.4 37 73.0
BolSC29t60497H Brassica oleracea HOM05D008016 ORTHO05D010588 1.1e-06 57.4 37 73.0
BolSC29t60557H Brassica oleracea HOM05D008016 ORTHO05D010588 1.1e-06 57.4 37 73.0
BolSC29t60625H Brassica oleracea HOM05D008016 ORTHO05D010588 1.1e-06 57.4 37 73.0
BolSC35t60682H Brassica oleracea HOM05D008016 ORTHO05D010588 1.1e-06 57.4 37 73.0
BolSC44t60813H Brassica oleracea HOM05D008016 ORTHO05D010588 1.1e-06 57.4 37 73.0
BolSC45t60920H Brassica oleracea HOM05D008016 ORTHO05D010588 1.1e-06 57.4 37 73.0
BolSC46t60968H Brassica oleracea HOM05D008016 ORTHO05D010588 1.1e-06 57.4 37 73.0
BraSC103t45418Z Brassica rapa HOM05D008016 ORTHO05D010588 1.1e-06 57.4 37 73.0
BraSC25t45901Z Brassica rapa HOM05D008016 ORTHO05D010588 1.1e-06 57.4 37 73.0
BraSC25t45922Z Brassica rapa HOM05D008016 ORTHO05D010588 1.1e-06 57.4 37 73.0
CARHR282370 Cardamine hirsuta HOM05D008016 ORTHO05D010588 1.1e-06 57.4 37 73.0
vmacro22417 Vaccinium macrocarpon HOM05D008354 ORTHO05D010055 1.1e-06 57.4 44 63.6
arahy.Tifrunner.gnm1.ann1.VZYH4A Arachis hypogaea HOM05D008016 ORTHO05D010588 2.5e-06 56.2 34 76.5
DCAR_001145 Daucus carota HOM05D001966 ORTHO05D010055 2.5e-06 56.2 43 65.1
Lsat_1_v5_gn_4_147840 Lactuca sativa HOM05D008016 ORTHO05D010588 2.5e-06 56.2 37 70.3
Psat5g119000 Pisum sativum HOM05D009726 ORTHO05D010588 2.5e-06 56.2 97 37.1
arahy.Tifrunner.gnm1.ann1.ZHN7AL Arachis hypogaea HOM05D001966 ORTHO05D007227 3.2e-06 55.8 34 73.5
Oeu041412.1 Olea europaea HOM05D001966 ORTHO05D010986 3.2e-06 55.8 36 75.0
Peaxi162Scf00687g00611 Petunia axillaris HOM05D001966 ORTHO05D010055 3.2e-06 55.8 61 49.2
Nitab4.5_0008665g0040 Nicotiana tabacum HOM05D001070 ORTHO05D002096 4.2e-06 55.5 44 59.1
CAN.G134.6 Capsicum annuum HOM05D008037 ORTHO05D004271 5.5e-06 55.1 49 55.1
Sopen02g009090 Solanum pennellii HOM05D008037 ORTHO05D004271 5.5e-06 55.1 34 76.5
Actinidia30703 Actinidia chinensis HOM05D001966 ORTHO05D009823 7.2e-06 54.7 68 52.9
arahy.Tifrunner.gnm1.ann1.3QB7SN Arachis hypogaea HOM05D001966 ORTHO05D007227 7.2e-06 54.7 32 78.1
Nitab4.5_0007400g0100 Nicotiana tabacum HOM05D008016 ORTHO05D004271 7.2e-06 54.7 26 84.6
Peaxi162Scf00080g00518 Petunia axillaris HOM05D001966 ORTHO05D007227 7.2e-06 54.7 28 89.3


User provided reference genes

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