Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_02800 Corchorus olitorius HOM05D000164 ORTHO05D000096 5.2e-19 96.7 47 100.0
COL.COLO4_31972 Corchorus olitorius HOM05D000164 ORTHO05D000096 9.7e-18 92.4 45 97.8
COL.COLO4_10238 Corchorus olitorius HOM05D000164 ORTHO05D000096 1.3e-17 92.0 45 95.6
COL.COLO4_04730 Corchorus olitorius HOM05D000164 ORTHO05D000096 2.8e-17 90.9 45 95.6
COL.COLO4_07138 Corchorus olitorius HOM05D000164 ORTHO05D000096 2.8e-17 90.9 45 95.6
COL.COLO4_10237 Corchorus olitorius HOM05D000164 ORTHO05D000096 4.8e-17 90.1 45 97.8
COL.COLO4_04731 Corchorus olitorius HOM05D000164 ORTHO05D000096 6.3e-17 89.7 45 91.1
COL.COLO4_37138 Corchorus olitorius HOM05D000164 ORTHO05D000096 6.3e-17 89.7 45 91.1
COL.COLO4_06190 Corchorus olitorius HOM05D000164 ORTHO05D000096 8.2e-17 89.4 45 95.6
COL.COLO4_04729 Corchorus olitorius HOM05D000164 ORTHO05D000096 1.1e-16 89.0 45 91.1
Ciclev10004752m.g Citrus clementina HOM05D000164 ORTHO05D000096 1.7e-14 81.6 45 80.0
COL.COLO4_06191 Corchorus olitorius HOM05D000164 ORTHO05D000096 2.5e-13 77.8 45 77.8
Thecc.04G228000 Theobroma cacao HOM05D000164 ORTHO05D000096 9.4e-13 75.9 43 79.1
PGR142G3892 Punica granatum HOM05D000164 ORTHO05D000096 1.6e-12 75.1 44 77.3
TWI09G1416 Tripterygium wilfordii HOM05D000164 ORTHO05D000096 2.1e-12 74.7 43 69.8
TAR636G2885 Trochodendron aralioides HOM05D000164 ORTHO05D000096 4.7e-12 73.6 43 76.7
Gohir.D09G055000 Gossypium hirsutum HOM05D000164 ORTHO05D000096 8.0e-12 72.8 45 75.6
Duzib052G0582 Durio zibethinus HOM05D000164 ORTHO05D000096 1.0e-11 72.4 44 77.3
Gorai.006G051900 Gossypium raimondii HOM05D000164 ORTHO05D000096 1.0e-11 72.4 44 79.5
Duzib151G0388 Durio zibethinus HOM05D000164 ORTHO05D000096 2.3e-11 71.2 44 72.7
Duzib212G0854 Durio zibethinus HOM05D000164 ORTHO05D000096 2.3e-11 71.2 44 77.3
Gorai.006G051800 Gossypium raimondii HOM05D000164 ORTHO05D000096 2.3e-11 71.2 45 73.3
COL.COLO4_08157 Corchorus olitorius HOM05D000164 ORTHO05D000096 3.0e-11 70.9 44 70.5
Gorai.006G052100 Gossypium raimondii HOM05D000164 ORTHO05D000096 3.0e-11 70.9 44 77.3
Cpa.g.sc508.2 Carica papaya HOM05D000164 ORTHO05D000096 6.8e-11 69.7 43 72.1
Potri.008G150700 Populus trichocarpa HOM05D000164 ORTHO05D000096 6.8e-11 69.7 44 79.5
Potri.008G150800 Populus trichocarpa HOM05D000164 ORTHO05D000096 6.8e-11 69.7 44 79.5
Eucgr.H03542 Eucalyptus grandis HOM05D000164 ORTHO05D000096 3.4e-10 67.4 44 70.5
Sabra08G0114600 Salix brachista HOM05D000164 ORTHO05D000096 3.4e-10 67.4 44 75.0
Sabra08G0114700 Salix brachista HOM05D000164 ORTHO05D000096 3.4e-10 67.4 44 75.0
BcaC05g30075 Brassica carinata HOM05D000164 ORTHO05D000096 4.4e-10 67.0 41 73.2
C05p61310 Brassica napus HOM05D000164 ORTHO05D000096 4.4e-10 67.0 41 73.2
A05p42080 Brassica napus HOM05D000164 ORTHO05D000096 5.7e-10 66.6 41 73.2
BolC5t34790H Brassica oleracea HOM05D000164 ORTHO05D000096 5.7e-10 66.6 41 73.2
BraA05t22928Z Brassica rapa HOM05D000164 ORTHO05D000096 5.7e-10 66.6 41 73.2
THA.LOC104802762 Tarenaya hassleriana HOM05D000164 ORTHO05D000096 5.7e-10 66.6 43 67.4
Thhalv10020542m.g Eutrema salsugineum HOM05D000164 ORTHO05D000096 9.8e-10 65.9 41 73.2
Eucgr.H03546 Eucalyptus grandis HOM05D000164 ORTHO05D000096 2.2e-09 64.7 44 65.9
Aa31LG5G16430 Aethionema arabicum HOM05D000164 ORTHO05D000096 4.8e-09 63.5 42 66.7
AL3G16760 Arabidopsis lyrata HOM05D000164 ORTHO05D000096 4.8e-09 63.5 42 66.7
AT3G05960 Arabidopsis thaliana HOM05D000164 ORTHO05D000096 4.8e-09 63.5 42 66.7
BcaNung03970 Brassica carinata HOM05D000164 ORTHO05D000096 4.8e-09 63.5 45 62.2
CARHR080460 Cardamine hirsuta HOM05D000164 ORTHO05D000096 4.8e-09 63.5 42 66.7
Sp2g21500 Schrenkiella parvula HOM05D000164 ORTHO05D000096 4.8e-09 63.5 41 65.9
BcaC09g47867 Brassica carinata HOM05D000164 ORTHO05D000096 6.3e-09 63.2 41 70.7
BolC1t05647H Brassica oleracea HOM05D000164 ORTHO05D000096 6.3e-09 63.2 41 70.7
BraA01t04459Z Brassica rapa HOM05D000164 ORTHO05D000096 6.3e-09 63.2 41 70.7
THA.LOC104822298 Tarenaya hassleriana HOM05D000164 ORTHO05D000096 8.3e-09 62.8 44 65.9
BcaNung02814 Brassica carinata HOM05D000164 ORTHO05D000096 1.1e-08 62.4 45 64.4
A06p36750 Brassica napus HOM05D000385 ORTHO05D000269 1.1e-08 62.4 45 64.4
C07p41780 Brassica napus HOM05D000164 ORTHO05D000096 1.1e-08 62.4 45 64.4
BolC7t44709H Brassica oleracea HOM05D000164 ORTHO05D000096 1.1e-08 62.4 45 64.4
BraA06t26597Z Brassica rapa HOM05D000164 ORTHO05D000096 1.1e-08 62.4 45 64.4
Nn1g02255 Nelumbo nucifera HOM05D000164 ORTHO05D000096 1.1e-08 62.4 44 63.6
BcaC01g04316 Brassica carinata HOM05D000164 ORTHO05D000096 1.4e-08 62.0 41 70.7
C03p41900 Brassica napus HOM05D000164 ORTHO05D000096 1.4e-08 62.0 41 70.7
BolC3t16473H Brassica oleracea HOM05D000164 ORTHO05D000096 1.4e-08 62.0 41 70.7
QL01p026857 Quercus lobata HOM05D000164 ORTHO05D000096 1.4e-08 62.0 45 64.4
BcaB04g19224 Brassica carinata HOM05D000164 ORTHO05D000096 1.8e-08 61.6 41 68.3
BraA03t12620Z Brassica rapa HOM05D000164 ORTHO05D000096 2.4e-08 61.2 41 70.7
Aa31LG11G10280 Aethionema arabicum HOM05D000164 ORTHO05D000096 3.1e-08 60.8 44 65.9
Thhalv10005607m.g Eutrema salsugineum HOM05D000164 ORTHO05D000096 4.1e-08 60.5 41 61.0
Sp3g04890 Schrenkiella parvula HOM05D000164 ORTHO05D000096 4.1e-08 60.5 41 65.9
A03p34440 Brassica napus HOM05D000164 ORTHO05D000096 5.4e-08 60.1 41 68.3
Carub.0006s2407 Capsella rubella HOM05D000164 ORTHO05D000096 7.0e-08 59.7 41 63.4
AT5G26250 Arabidopsis thaliana HOM05D000164 ORTHO05D000096 1.2e-07 58.9 41 61.0
AL6G38260 Arabidopsis lyrata HOM05D000164 ORTHO05D000096 1.6e-07 58.5 41 61.0
MBI01_g40484_MAGBIO Magnolia biondii HOM05D000164 ORTHO05D000096 1.6e-07 58.5 46 60.9
Aa31LG11G10260 Aethionema arabicum HOM05D000164 ORTHO05D000096 2.7e-07 57.8 45 62.2
CARHR187120 Cardamine hirsuta HOM05D000164 ORTHO05D000096 5.9e-07 56.6 41 58.5
Nn1g02256 Nelumbo nucifera HOM05D000164 ORTHO05D000096 7.7e-07 56.2 39 59.0
HPP92_006438 Vanilla planifolia HOM05D000164 ORTHO05D000096 7.7e-07 56.2 32 78.1
CARHR228150 Cardamine hirsuta HOM05D000164 ORTHO05D000096 1.0e-06 55.8 44 56.8
CDE03G0225 Ceratophyllum demersum HOM05D000164 ORTHO05D000096 1.0e-06 55.8 45 62.2
Gohir.D05G091000 Gossypium hirsutum HOM05D000164 ORTHO05D000096 1.7e-06 55.1 41 56.1
RcHm_v2.0_Chr5g0006171 Rosa chinensis HOM05D000164 ORTHO05D000096 1.7e-06 55.1 43 60.5
FvH4_3g03900 Fragaria vesca HOM05D000164 ORTHO05D000096 2.2e-06 54.7 43 60.5
FAN11G2475 Fragaria x ananassa HOM05D000164 ORTHO05D000096 2.2e-06 54.7 43 60.5
FAN16G0774 Fragaria x ananassa HOM05D000164 ORTHO05D000096 2.2e-06 54.7 43 60.5
Nitab4.5_0004425g0040 Nicotiana tabacum HOM05D000164 ORTHO05D000096 2.2e-06 54.7 39 64.1
Ciclev10006537m.g Citrus clementina HOM05D000164 ORTHO05D000096 2.9e-06 54.3 32 71.9
Os07g0206600 Oryza sativa ssp. japonica HOM05D000164 ORTHO05D000096 2.9e-06 54.3 42 59.5
RcHm_v2.0_Chr5g0075721 Rosa chinensis HOM05D000164 ORTHO05D000096 2.9e-06 54.3 43 60.5
SEGI_10951 Sequoiadendron giganteum HOM05D000164 ORTHO05D000096 2.9e-06 54.3 40 62.5
EL10Ac9g22974 Beta vulgaris HOM05D000164 ORTHO05D000096 3.8e-06 53.9 45 55.6
CDE04G1230 Ceratophyllum demersum HOM05D000164 ORTHO05D000096 3.8e-06 53.9 45 60.0
BcaC09g51217 Brassica carinata HOM05D000164 ORTHO05D000096 5.0e-06 53.5 44 54.5
A01p12800 Brassica napus HOM05D000164 ORTHO05D000096 5.0e-06 53.5 44 54.5
C01p15400 Brassica napus HOM05D000164 ORTHO05D000096 5.0e-06 53.5 44 54.5
BolC1t01494H Brassica oleracea HOM05D000164 ORTHO05D000096 5.0e-06 53.5 44 54.5
BraA01t01223Z Brassica rapa HOM05D000164 ORTHO05D000096 5.0e-06 53.5 44 54.5
CSS0003916 Camellia sinensis var. sinensis HOM05D000164 ORTHO05D000096 5.0e-06 53.5 45 53.3
CSS0029063 Camellia sinensis var. sinensis HOM05D000164 ORTHO05D000096 5.0e-06 53.5 45 53.3
CDE05G2855 Ceratophyllum demersum HOM05D000164 ORTHO05D000096 5.0e-06 53.5 45 53.3
DCAR_007392 Daucus carota HOM05D000164 ORTHO05D000096 5.0e-06 53.5 45 60.0
Nitab4.5_0000190g0030 Nicotiana tabacum HOM05D000164 ORTHO05D000096 5.0e-06 53.5 45 55.6
Os07g0559700 Oryza sativa ssp. japonica HOM05D000164 ORTHO05D000096 5.0e-06 53.5 45 51.1
Pp3c8_7000 Physcomitrium patens HOM05D000164 ORTHO05D000096 5.0e-06 53.5 37 59.5
Rhsim04G0205600 Rhododendron simsii HOM05D000164 ORTHO05D000096 5.0e-06 53.5 39 56.4
Cfa011651 Carpinus fangiana HOM05D000495 ORTHO05D000357 6.5e-06 53.1 45 53.3
CiPaw.14G061300 Carya illinoinensis HOM05D000164 ORTHO05D000096 6.5e-06 53.1 44 61.4
Haze_24255 Corylus avellana HOM05D000164 ORTHO05D000096 6.5e-06 53.1 38 60.5
Migut.G00319 Erythranthe guttata HOM05D000164 ORTHO05D000096 6.5e-06 53.1 39 53.8
Migut.G00320 Erythranthe guttata HOM05D000164 ORTHO05D000096 6.5e-06 53.1 39 53.8
Gorai.009G093500 Gossypium raimondii HOM05D000164 ORTHO05D000096 6.5e-06 53.1 41 53.7
Nitab4.5_0005389g0010 Nicotiana tabacum HOM05D000164 ORTHO05D000096 6.5e-06 53.1 45 55.6
Nitab4.5_0011474g0020 Nicotiana tabacum HOM05D000164 ORTHO05D000096 6.5e-06 53.1 38 57.9
Oeu034361.1 Olea europaea HOM05D000164 ORTHO05D000096 6.5e-06 53.1 39 59.0
PGSC0003DMG400022402 Solanum tuberosum HOM05D000164 ORTHO05D000096 6.5e-06 53.1 45 55.6
Actinidia40173 Actinidia chinensis HOM05D000164 ORTHO05D000096 8.5e-06 52.8 33 66.7
AT4G21480 Arabidopsis thaliana HOM05D000164 ORTHO05D000096 8.5e-06 52.8 41 58.5
CSS0019618 Camellia sinensis var. sinensis HOM05D000164 ORTHO05D000096 8.5e-06 52.8 31 74.2
Eucgr.K00178 Eucalyptus grandis HOM05D000164 ORTHO05D000096 8.5e-06 52.8 45 55.6
Thhalv10024986m.g Eutrema salsugineum HOM05D000164 ORTHO05D000096 8.5e-06 52.8 44 56.8
Gohir.A05G090100 Gossypium hirsutum HOM05D000164 ORTHO05D000096 8.5e-06 52.8 41 53.7
Lj3g0020851 Lotus japonicus HOM05D000164 ORTHO05D000096 8.5e-06 52.8 45 48.9
SEGI_11199 Sequoiadendron giganteum HOM05D000164 ORTHO05D000096 8.5e-06 52.8 47 51.1
SGA_v2.0_scaffold256G45656 Striga asiatica HOM05D000164 ORTHO05D000096 8.5e-06 52.8 45 51.1
vmacro15983 Vaccinium macrocarpon HOM05D000164 ORTHO05D000096 8.5e-06 52.8 45 48.9


User provided reference genes

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