Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_02760 Corchorus olitorius HOM05D007087 ORTHO05D008968 2.6e-40 168.3 88 100.0
COL.COLO4_11683 Corchorus olitorius HOM05D007087 ORTHO05D008968 6.7e-28 127.1 83 84.3
Sc16g0000740 Simmondsia chinensis HOM05D007087 ORTHO05D008968 8.7e-28 126.7 83 83.1
TAR376G1208 Trochodendron aralioides HOM05D007087 ORTHO05D008968 8.7e-28 126.7 83 83.1
TWI77G0839 Tripterygium wilfordii HOM05D007087 ORTHO05D008968 1.1e-27 126.3 83 84.3
CSS0037594 Camellia sinensis var. sinensis HOM05D007087 ORTHO05D008968 1.5e-27 125.9 83 83.1
CSS0044951 Camellia sinensis var. sinensis HOM05D007087 ORTHO05D008968 1.5e-27 125.9 83 83.1
Cfa006833 Carpinus fangiana HOM05D007087 ORTHO05D008968 1.5e-27 125.9 83 83.1
CiPaw.08G145100 Carya illinoinensis HOM05D007087 ORTHO05D008968 1.5e-27 125.9 84 81.0
Dinv27003 Davidia involucrata HOM05D007087 ORTHO05D008968 1.5e-27 125.9 83 83.1
Duzib264G0202 Durio zibethinus HOM05D007087 ORTHO05D008968 1.5e-27 125.9 83 83.1
Gohir.A11G208700 Gossypium hirsutum HOM05D007087 ORTHO05D008968 1.5e-27 125.9 83 83.1
Gohir.D11G214800 Gossypium hirsutum HOM05D007087 ORTHO05D008968 1.5e-27 125.9 83 83.1
Gorai.007G230500 Gossypium raimondii HOM05D007087 ORTHO05D008968 1.5e-27 125.9 83 83.1
Hma1.2p1_0080F.1_g042080 Hydrangea macrophylla HOM05D007087 ORTHO05D008968 1.5e-27 125.9 83 83.1
QL06p037367 Quercus lobata HOM05D007087 ORTHO05D008968 1.5e-27 125.9 83 83.1
Atru.chr3.1157 Acer truncatum HOM05D007087 ORTHO05D008968 2.5e-27 125.2 83 83.1
Atru.chr3.1173 Acer truncatum HOM05D007087 ORTHO05D008968 2.5e-27 125.2 83 83.1
EL10Ac6g13306 Beta vulgaris HOM05D007087 ORTHO05D008968 2.5e-27 125.2 84 79.8
Ciclev10027006m.g Citrus clementina HOM05D007087 ORTHO05D008968 3.3e-27 124.8 83 83.1
Dinv36975 Davidia involucrata HOM05D007087 ORTHO05D008968 3.3e-27 124.8 85 78.8
FvH4_1g19040 Fragaria vesca HOM05D007087 ORTHO05D008968 3.3e-27 124.8 83 81.9
FAN23G1122 Fragaria x ananassa HOM05D007087 ORTHO05D008968 3.3e-27 124.8 83 81.9
FAN26G0060 Fragaria x ananassa HOM05D007087 ORTHO05D008968 3.3e-27 124.8 83 81.9
FAN28G2302 Fragaria x ananassa HOM05D007087 ORTHO05D008968 3.3e-27 124.8 83 81.9
Manes.12G121500 Manihot esculenta HOM05D007087 ORTHO05D008968 3.3e-27 124.8 83 81.9
PGR102G1803 Punica granatum HOM05D007087 ORTHO05D008968 3.3e-27 124.8 83 81.9
RcHm_v2.0_Chr2g0110041 Rosa chinensis HOM05D007087 ORTHO05D008968 3.3e-27 124.8 83 81.9
CiPaw.07G042900 Carya illinoinensis HOM05D007087 ORTHO05D008968 4.3e-27 124.4 83 81.9
ECA232G4432 Erigeron canadensis HOM05D007087 ORTHO05D008968 4.3e-27 124.4 83 81.9
HanXRQChr09g0262861 Helianthus annuus HOM05D007087 ORTHO05D008968 4.3e-27 124.4 83 81.9
AL4G12190 Arabidopsis lyrata HOM05D007087 ORTHO05D008968 5.6e-27 124.0 83 81.9
AT2G22640 Arabidopsis thaliana HOM05D007087 ORTHO05D008968 5.6e-27 124.0 83 81.9
arahy.Tifrunner.gnm1.ann1.6G1T2R Arachis hypogaea HOM05D007087 ORTHO05D008968 5.6e-27 124.0 83 81.9
arahy.Tifrunner.gnm1.ann1.NU08EI Arachis hypogaea HOM05D007087 ORTHO05D008968 5.6e-27 124.0 83 81.9
BcaB06g27810 Brassica carinata HOM05D007087 ORTHO05D008968 5.6e-27 124.0 83 81.9
Carub.0004s0180 Capsella rubella HOM05D007087 ORTHO05D008968 5.6e-27 124.0 83 81.9
Ca_13466_v3 Cicer arietinum L. HOM05D007087 ORTHO05D008968 5.6e-27 124.0 83 81.9
Duzib147G0219 Durio zibethinus HOM05D007087 ORTHO05D008968 5.6e-27 124.0 83 81.9
Thhalv10000402m.g Eutrema salsugineum HOM05D007087 ORTHO05D008968 5.6e-27 124.0 83 81.9
Glyma.01G020200 Glycine max HOM05D007087 ORTHO05D008968 5.6e-27 124.0 83 81.9
Lj2g0010143 Lotus japonicus HOM05D007087 ORTHO05D008968 5.6e-27 124.0 83 81.9
MBI16_g36494_MAGBIO Magnolia biondii HOM05D007087 ORTHO05D008968 5.6e-27 124.0 83 81.9
Medtr5g030935 Medicago truncatula HOM05D007087 ORTHO05D008968 5.6e-27 124.0 83 81.9
Phvul.002G143500 Phaseolus vulgaris HOM05D007087 ORTHO05D008968 5.6e-27 124.0 83 81.9
Psat2g134040 Pisum sativum HOM05D007087 ORTHO05D008968 5.6e-27 124.0 83 81.9
Sp4g01675 Schrenkiella parvula HOM05D007087 ORTHO05D008968 5.6e-27 124.0 82 82.9
TWI53G1267 Tripterygium wilfordii HOM05D007087 ORTHO05D008968 5.6e-27 124.0 83 83.1
Lsat_1_v5_gn_4_156341 Lactuca sativa HOM05D007087 ORTHO05D008968 7.4e-27 123.6 83 80.7
TAR625G1164 Trochodendron aralioides HOM05D007087 ORTHO05D008968 7.4e-27 123.6 82 82.9
Oeu024989.2 Olea europaea HOM05D007087 ORTHO05D008968 9.6e-27 123.2 83 80.7
Thecc.01G084300 Theobroma cacao HOM05D007087 ORTHO05D008968 9.6e-27 123.2 83 81.9
Actinidia16395 Actinidia chinensis HOM05D007087 ORTHO05D008968 1.3e-26 122.9 83 80.7
HanXRQChr11g0324431 Helianthus annuus HOM05D007087 ORTHO05D008968 1.3e-26 122.9 83 80.7
MD01G1044400 Malus domestica HOM05D007087 ORTHO05D008968 1.3e-26 122.9 83 80.7
Prupe.6G209300 Prunus persica HOM05D007087 ORTHO05D008968 1.3e-26 122.9 83 80.7
TPR.G37071 Trifolium pratense HOM05D007087 ORTHO05D008968 1.3e-26 122.9 83 80.7
Cpa.g.sc129.16 Carica papaya HOM05D007087 ORTHO05D008968 1.6e-26 122.5 83 80.7
MELO3C007697.2 Cucumis melo HOM05D007087 ORTHO05D008968 1.6e-26 122.5 83 79.5
CsaV3_6G044750 Cucumis sativus L. HOM05D007087 ORTHO05D008968 1.6e-26 122.5 82 80.5
vmacro18037 Vaccinium macrocarpon HOM05D007087 ORTHO05D008968 1.6e-26 122.5 83 80.7
ClCG01G018190 Citrullus lanatus HOM05D007087 ORTHO05D008968 2.1e-26 122.1 82 80.5
Glyma.09G202200 Glycine max HOM05D007087 ORTHO05D008968 2.1e-26 122.1 83 80.7
Actinidia22784 Actinidia chinensis HOM05D007087 ORTHO05D008968 2.8e-26 121.7 83 79.5
Eucgr.I00598 Eucalyptus grandis HOM05D007087 ORTHO05D008968 2.8e-26 121.7 83 80.7
Eucgr.I00599 Eucalyptus grandis HOM05D007087 ORTHO05D008968 2.8e-26 121.7 83 80.7
Aqoxy5G01405 Aquilegia oxysepala HOM05D007087 ORTHO05D008968 6.2e-26 120.6 85 80.0
AUR62005889 Chenopodium quinoa HOM05D007087 ORTHO05D008968 6.2e-26 120.6 83 77.1
Migut.L00449 Erythranthe guttata HOM05D007087 ORTHO05D008968 6.2e-26 120.6 83 78.3
ATR0800G005 Amborella trichopoda HOM05D007087 ORTHO05D008968 8.2e-26 120.2 82 79.3
THA.LOC104807661 Tarenaya hassleriana HOM05D007087 ORTHO05D008968 8.2e-26 120.2 83 78.3
BcaC02g08628 Brassica carinata HOM05D007087 ORTHO05D008968 1.4e-25 119.4 84 81.0
A04p17120 Brassica napus HOM05D007087 ORTHO05D008968 1.4e-25 119.4 84 81.0
C04p51930 Brassica napus HOM05D007087 ORTHO05D008968 1.4e-25 119.4 84 81.0
BolC4t26765H Brassica oleracea HOM05D007087 ORTHO05D008968 1.4e-25 119.4 84 81.0
BraA04t17341Z Brassica rapa HOM05D007087 ORTHO05D008968 1.4e-25 119.4 84 81.0
Lalb_Chr05g0216201 Lupinus albus HOM05D007087 ORTHO05D008968 1.4e-25 119.4 83 78.3
THA.LOC104824923 Tarenaya hassleriana HOM05D007087 ORTHO05D008968 1.8e-25 119.0 83 77.1
Lalb_Chr09g0325791 Lupinus albus HOM05D007087 ORTHO05D008968 2.4e-25 118.6 83 79.5
CDE01G0651 Ceratophyllum demersum HOM05D007087 ORTHO05D008968 3.1e-25 118.2 84 75.0
Hund16615 Selenicereus undatus HOM05D007087 ORTHO05D008968 9.0e-25 116.7 79 78.5
PSO017G4672 Papaver somniferum HOM05D007087 ORTHO05D008968 1.7e-23 112.5 85 74.1
PSO478G0358 Papaver somniferum HOM05D007087 ORTHO05D008968 1.7e-23 112.5 85 74.1
Potri.014G010000 Populus trichocarpa HOM05D007087 ORTHO05D008968 8.4e-23 110.2 90 70.0
Zm00001eb259430 Zea mays HOM05D007087 ORTHO05D008968 7.1e-22 107.1 83 69.9
BcaB08g35111 Brassica carinata HOM05D007087 ORTHO05D008968 1.6e-21 105.9 84 71.4
CAN.G11.24 Capsicum annuum HOM05D007087 ORTHO05D008968 2.7e-21 105.1 83 68.7
A09p57350 Brassica napus HOM05D007087 ORTHO05D008968 1.5e-19 99.4 82 70.7
BraA09t41128Z Brassica rapa HOM05D007087 ORTHO05D008968 1.5e-19 99.4 82 70.7
Sed0015245 Sechium edule HOM05D007087 ORTHO05D008968 7.4e-19 97.1 67 76.1
Sabra14G0004400 Salix brachista HOM05D007087 ORTHO05D008968 9.7e-19 96.7 71 71.8
Cc07_g07910 Coffea canephora HOM05D007087 ORTHO05D008968 1.3e-18 96.3 83 66.3
Nitab4.5_0000465g0110 Nicotiana tabacum HOM05D007087 ORTHO05D008968 2.8e-18 95.1 83 65.1
Solyc03g043720.4 Solanum lycopersicum HOM05D007087 ORTHO05D008968 2.8e-18 95.1 83 65.1
Sopen03g007570 Solanum pennellii HOM05D007087 ORTHO05D008968 2.8e-18 95.1 83 65.1
PGSC0003DMG400016688 Solanum tuberosum HOM05D007087 ORTHO05D008968 2.8e-18 95.1 83 65.1
Peaxi162Scf00118g00061 Petunia axillaris HOM05D007087 ORTHO05D008968 4.8e-18 94.4 83 65.1
Sabra14G0001400 Salix brachista HOM05D007087 ORTHO05D008968 4.8e-18 94.4 73 69.9
Os02g0829900 Oryza sativa ssp. japonica HOM05D007087 ORTHO05D008968 1.8e-17 92.4 85 64.7
Nn5g29785 Nelumbo nucifera HOM05D007087 ORTHO05D008968 6.9e-17 90.5 47 95.7
Pp3c8_2740 Physcomitrium patens HOM05D007087 ORTHO05D008968 4.5e-16 87.8 77 62.3
Aa31LG7G14170 Aethionema arabicum HOM05D007087 ORTHO05D008968 1.0e-15 86.7 44 95.5
Mapoly0132s0041 Marchantia polymorpha HOM05D007087 ORTHO05D008968 2.9e-15 85.1 76 60.5
AagrBONN_evm.TU.Sc2ySwM_344.2813 Anthoceros agrestis HOM05D007087 ORTHO05D008968 3.8e-15 84.7 78 56.4
SMO144G0170 Selaginella moellendorffii HOM05D007087 ORTHO05D008968 1.4e-12 76.3 73 53.4
unitig_32.g10648 Utricularia gibba HOM05D007087 ORTHO05D008968 1.4e-12 76.3 44 79.5
Actinidia36375 Actinidia chinensis HOM05D007087 ORTHO05D008968 3.0e-12 75.1 78 55.1
Nitab4.5_0008656g0010 Nicotiana tabacum HOM05D007087 ORTHO05D008968 8.8e-12 73.6 83 54.2
Nitab4.5_0000465g0080 Nicotiana tabacum HOM05D007087 ORTHO05D008968 6.5e-07 57.4 33 81.8
FAN19G2569 Fragaria x ananassa HOM05D007087 ORTHO05D008968 1.1e-06 56.6 48 68.8


User provided reference genes

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