Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_02464 Corchorus olitorius HOM05D022577 ORTHO05D010957 9.2e-77 290.0 136 100.0
COL.COLO4_01560 Corchorus olitorius HOM05D022577 ORTHO05D010957 2.1e-73 278.9 131 100.0
COL.COLO4_03155 Corchorus olitorius HOM05D022577 ORTHO05D010957 2.1e-73 278.9 131 100.0
COL.COLO4_03198 Corchorus olitorius HOM05D022577 ORTHO05D010957 2.1e-73 278.9 131 100.0
Sabra01G0106600 Salix brachista HOM05D000003 ORTHO05D000022 1.2e-15 87.0 105 39.0
arahy.Tifrunner.gnm1.ann1.3ZGA1D Arachis hypogaea HOM05D000155 ORTHO05D000022 4.5e-15 85.1 107 35.5
Sabra09G0061300 Salix brachista HOM05D000003 ORTHO05D000022 2.2e-14 82.8 105 38.1
Atru.chr11.82 Acer truncatum HOM05D000003 ORTHO05D000022 3.8e-14 82.0 93 39.8
COL.COLO4_20072 Corchorus olitorius HOM05D003999 ORTHO05D010957 5.0e-14 81.6 75 42.7
arahy.Tifrunner.gnm1.ann1.WYFF13 Arachis hypogaea HOM05D000155 ORTHO05D000022 8.5e-14 80.9 107 34.6
Psat1g119200 Pisum sativum HOM05D000003 ORTHO05D000022 3.2e-13 79.0 117 34.2
Phvul.001G128200 Phaseolus vulgaris HOM05D000005 ORTHO05D000012 9.4e-13 77.4 117 35.9
SGA_v2.0_scaffold245G44469 Striga asiatica HOM05D000003 ORTHO05D000022 9.4e-13 77.4 99 36.4
Atru.chr11.1308 Acer truncatum HOM05D000003 ORTHO05D000022 1.2e-12 77.0 104 34.6
Lj1g0018212 Lotus japonicus HOM05D000003 ORTHO05D000022 2.7e-12 75.9 102 37.3
TPR.G5368 Trifolium pratense HOM05D008718 ORTHO05D000022 2.7e-12 75.9 100 33.0
TPR.G34821 Trifolium pratense HOM05D008718 ORTHO05D010957 3.6e-12 75.5 90 38.9
TPR.G36503 Trifolium pratense HOM05D008718 ORTHO05D010957 3.6e-12 75.5 100 35.0
TWI81G0242 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 3.6e-12 75.5 99 36.4
TPR.G32733 Trifolium pratense HOM05D000005 ORTHO05D000012 6.1e-12 74.7 117 32.5
VMungo1383G2358 Vigna mungo HOM05D000005 ORTHO05D000012 6.1e-12 74.7 103 36.9
Lalb_Chr09g0330401 Lupinus albus HOM05D000155 ORTHO05D000022 7.9e-12 74.3 84 39.3
TPR.G17895 Trifolium pratense HOM05D000003 ORTHO05D000022 1.0e-11 73.9 100 35.0
TPR.G21331 Trifolium pratense HOM05D000003 ORTHO05D000022 1.0e-11 73.9 100 35.0
Atru.chr8.1057 Acer truncatum HOM05D000003 ORTHO05D000022 2.3e-11 72.8 73 42.5
Ca_11916_v3 Cicer arietinum L. HOM05D000003 ORTHO05D000022 3.9e-11 72.0 86 39.5
TPR.G33526 Trifolium pratense HOM05D000155 ORTHO05D000022 3.9e-11 72.0 97 37.1
TPR.G544 Trifolium pratense HOM05D008718 ORTHO05D010957 3.9e-11 72.0 82 37.8
arahy.Tifrunner.gnm1.ann1.C14R7W Arachis hypogaea HOM05D000003 ORTHO05D000022 5.1e-11 71.6 88 39.8
arahy.Tifrunner.gnm1.ann1.PA7RNP Arachis hypogaea HOM05D000003 ORTHO05D000022 5.1e-11 71.6 88 39.8
Atru.chr3.2200 Acer truncatum HOM05D000003 ORTHO05D000022 6.7e-11 71.2 118 33.9
Atru.chr3.2067 Acer truncatum HOM05D000003 ORTHO05D000022 8.8e-11 70.9 103 34.0
Atru.chr4.1844 Acer truncatum HOM05D000003 ORTHO05D000022 8.8e-11 70.9 73 45.2
Atru.chr2.1419 Acer truncatum HOM05D000003 ORTHO05D000022 1.1e-10 70.5 97 34.0
Atru.chr8.2517 Acer truncatum HOM05D000003 ORTHO05D000022 1.1e-10 70.5 96 33.3
Atru.chr13.1498 Acer truncatum HOM05D000003 ORTHO05D000022 1.5e-10 70.1 102 35.3
Ca_30855_v3 Cicer arietinum L. HOM05D022577 ORTHO05D000022 1.5e-10 70.1 82 39.0
Atru.chr10.890 Acer truncatum HOM05D000003 ORTHO05D000022 2.0e-10 69.7 111 31.5
CSS0027105 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 2.0e-10 69.7 107 37.4
CSS0043443 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 2.0e-10 69.7 107 38.3
Atru.chr8.699 Acer truncatum HOM05D000003 ORTHO05D000022 2.6e-10 69.3 97 34.0
Lalb_Chr07g0182561 Lupinus albus HOM05D000155 ORTHO05D000022 2.6e-10 69.3 84 38.1
QL06p035443 Quercus lobata HOM05D000003 ORTHO05D000022 2.6e-10 69.3 108 35.2
COL.COLO4_36419 Corchorus olitorius HOM05D003999 ORTHO05D016250 5.7e-10 68.2 55 45.5
COL.COLO4_27635 Corchorus olitorius HOM05D000003 ORTHO05D000022 7.4e-10 67.8 99 31.3
Nitab4.5_0003867g0080 Nicotiana tabacum HOM05D000003 ORTHO05D000022 7.4e-10 67.8 121 37.2
Nitab4.5_0007388g0060 Nicotiana tabacum HOM05D000003 ORTHO05D000022 7.4e-10 67.8 122 36.1
Nitab4.5_0007519g0010 Nicotiana tabacum HOM05D000003 ORTHO05D000022 7.4e-10 67.8 122 36.1
Atru.chr2.2394 Acer truncatum HOM05D000003 ORTHO05D000022 9.7e-10 67.4 83 36.1
Ca_11781_v3 Cicer arietinum L. HOM05D000155 ORTHO05D000022 9.7e-10 67.4 90 36.7
CSS0010523 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.3e-09 67.0 107 34.6
CSS0044722 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.3e-09 67.0 107 34.6
Atru.chr10.629 Acer truncatum HOM05D000003 ORTHO05D000004 2.2e-09 66.2 93 33.3
Atru.chr3.1552 Acer truncatum HOM05D000003 ORTHO05D000022 2.2e-09 66.2 104 29.8
Atru.chr3.3019 Acer truncatum HOM05D000003 ORTHO05D000022 2.2e-09 66.2 96 34.4
COL.COLO4_19293 Corchorus olitorius HOM05D000155 ORTHO05D000022 2.2e-09 66.2 103 33.0
TPR.G2407 Trifolium pratense HOM05D008718 ORTHO05D010957 2.2e-09 66.2 106 34.9
Atru.chr2.284 Acer truncatum HOM05D000003 ORTHO05D000022 2.8e-09 65.9 111 30.6
Atru.chr3.1505 Acer truncatum HOM05D000003 ORTHO05D000022 2.8e-09 65.9 97 30.9
Nitab4.5_0012197g0020 Nicotiana tabacum HOM05D000003 ORTHO05D000022 2.8e-09 65.9 112 36.6
Atru.chr5.2141 Acer truncatum HOM05D000003 ORTHO05D000022 3.7e-09 65.5 73 38.4
Lj1g0013654 Lotus japonicus HOM05D000155 ORTHO05D000022 3.7e-09 65.5 105 28.6
TPR.G4558 Trifolium pratense HOM05D000101 ORTHO05D000089 3.7e-09 65.5 71 42.3
Atru.chr10.713 Acer truncatum HOM05D000003 ORTHO05D000022 4.8e-09 65.1 117 29.9
Atru.chr9.518 Acer truncatum HOM05D000003 ORTHO05D000022 4.8e-09 65.1 103 35.0
Atru.chr3.2744 Acer truncatum HOM05D000003 ORTHO05D000022 6.3e-09 64.7 107 30.8
CSS0023133 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 6.3e-09 64.7 107 34.6
Atru.chr12.2455 Acer truncatum HOM05D000003 ORTHO05D000022 8.2e-09 64.3 97 29.9
Ca_27941_v3 Cicer arietinum L. HOM05D000085 ORTHO05D013008 8.2e-09 64.3 73 42.5
Atru.chr11.90 Acer truncatum HOM05D000003 ORTHO05D000022 1.1e-08 63.9 77 41.6
Atru.chr7.713 Acer truncatum HOM05D000003 ORTHO05D000004 1.1e-08 63.9 105 30.5
Atru.chr8.829 Acer truncatum HOM05D000003 ORTHO05D000022 1.1e-08 63.9 93 34.4
COL.COLO4_04261 Corchorus olitorius HOM05D040554 ORTHO05D010957 1.1e-08 63.9 60 41.7
PGR031G0166 Punica granatum HOM05D000155 ORTHO05D000022 1.1e-08 63.9 90 33.3
Atru.chr4.1478 Acer truncatum HOM05D000003 ORTHO05D000022 1.4e-08 63.5 97 28.9
CSS0035385 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.4e-08 63.5 81 42.0
Atru.chr4.29 Acer truncatum HOM05D000003 ORTHO05D000022 1.8e-08 63.2 92 34.8
Lj3g0003007 Lotus japonicus HOM05D000003 ORTHO05D000022 1.8e-08 63.2 101 33.7
CSS0026614 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 2.4e-08 62.8 107 32.7
Atru.chr1.2620 Acer truncatum HOM05D000003 ORTHO05D000004 3.1e-08 62.4 92 34.8
CSS0047834 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 3.1e-08 62.4 110 30.0
TPR.G30189 Trifolium pratense HOM05D008718 ORTHO05D010957 3.1e-08 62.4 73 45.2
Atru.chr12.663 Acer truncatum HOM05D000003 ORTHO05D000022 4.1e-08 62.0 97 28.9
Atru.chr2.3435 Acer truncatum HOM05D000003 ORTHO05D000022 4.1e-08 62.0 73 39.7
Atru.chr6.1037 Acer truncatum HOM05D000003 ORTHO05D000022 4.1e-08 62.0 86 33.7
Atru.chr8.1133 Acer truncatum HOM05D000003 ORTHO05D000022 4.1e-08 62.0 105 29.5
Sabra16G0000700 Salix brachista HOM05D060723 ORTHO05D000022 4.1e-08 62.0 76 35.5
Sopen10g006600 Solanum pennellii HOM05D000003 ORTHO05D001349 4.1e-08 62.0 123 35.8
TWI38G0333 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 4.1e-08 62.0 100 29.0
Atru.chr1.956 Acer truncatum HOM05D000003 ORTHO05D000006 5.3e-08 61.6 99 28.3
Atru.chr7.668 Acer truncatum HOM05D000003 ORTHO05D000004 5.3e-08 61.6 73 35.6
Dinv08373 Davidia involucrata HOM05D000003 ORTHO05D029248 5.3e-08 61.6 56 48.2
Medtr1g056190 Medicago truncatula HOM05D008718 ORTHO05D010957 5.3e-08 61.6 67 43.3
CSS0032702 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 7.0e-08 61.2 91 39.6
COL.COLO4_30280 Corchorus olitorius HOM05D000155 ORTHO05D000022 7.0e-08 61.2 100 36.0
Atru.chr11.757 Acer truncatum HOM05D000003 ORTHO05D000004 9.1e-08 60.8 73 38.4
EL10Ac1g00386 Beta vulgaris HOM05D000428 ORTHO05D000022 9.1e-08 60.8 99 31.3
Prupe.6G118100 Prunus persica HOM05D000003 ORTHO05D000022 9.1e-08 60.8 93 29.0
Atru.chr1.1754 Acer truncatum HOM05D000003 ORTHO05D000022 1.2e-07 60.5 78 37.2
Atru.chr3.1522 Acer truncatum HOM05D000003 ORTHO05D000006 1.2e-07 60.5 105 28.6
EL10Ac7g16709 Beta vulgaris HOM05D000003 ORTHO05D000004 1.2e-07 60.5 105 30.5
CSS0032809 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.2e-07 60.5 87 37.9
Prupe.5G085900 Prunus persica HOM05D000003 ORTHO05D000022 1.2e-07 60.5 91 29.7
QL02p017925 Quercus lobata HOM05D000003 ORTHO05D000022 1.2e-07 60.5 86 33.7
Atru.chr10.1106 Acer truncatum HOM05D000003 ORTHO05D000022 1.5e-07 60.1 101 29.7
Lj2C63T5 Lonicera japonica HOM05D016027 ORTHO05D000022 1.5e-07 60.1 116 31.0
Prupe.6G201000 Prunus persica HOM05D000003 ORTHO05D000022 1.5e-07 60.1 93 29.0
CSS0039165 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.0e-07 59.7 73 39.7
Medtr5g080880 Medicago truncatula HOM05D001009 ORTHO05D000829 2.0e-07 59.7 80 41.2
CSS0029354 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.6e-07 59.3 106 31.1
CSS0036731 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 2.6e-07 59.3 86 38.4
Hma1.2p1_0333F.1_g128210 Hydrangea macrophylla HOM05D000003 ORTHO05D000022 2.6e-07 59.3 90 33.3
Hma1.2p1_3263F.1_g334663 Hydrangea macrophylla HOM05D000003 ORTHO05D000022 2.6e-07 59.3 90 33.3
Hma1.2p1_3263F.1_g334666 Hydrangea macrophylla HOM05D000003 ORTHO05D000022 2.6e-07 59.3 90 33.3
Lalb_Chr14g0364311 Lupinus albus HOM05D008718 ORTHO05D010957 2.6e-07 59.3 75 36.0
Medtr1g040395 Medicago truncatula HOM05D008718 ORTHO05D010957 2.6e-07 59.3 63 44.4
TPR.G35524 Trifolium pratense HOM05D008718 ORTHO05D010957 2.6e-07 59.3 100 30.0
Atru.chr10.81 Acer truncatum HOM05D000003 ORTHO05D000004 3.4e-07 58.9 73 37.0
Atru.chr12.2484 Acer truncatum HOM05D000003 ORTHO05D000022 3.4e-07 58.9 94 29.8
CSS0032736 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 3.4e-07 58.9 86 38.4
Actinidia31778 Actinidia chinensis HOM05D000155 ORTHO05D000022 4.5e-07 58.5 107 30.8
Actinidia35690 Actinidia chinensis HOM05D000003 ORTHO05D000022 4.5e-07 58.5 98 36.7
Atru.chr10.857 Acer truncatum HOM05D000003 ORTHO05D000004 5.9e-07 58.2 73 34.2
CSS0020179 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 5.9e-07 58.2 86 33.7
CSS0049818 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 5.9e-07 58.2 112 34.8
Sopen10g008360 Solanum pennellii HOM05D000003 ORTHO05D000022 5.9e-07 58.2 110 32.7
Atru.chr1.276 Acer truncatum HOM05D000003 ORTHO05D000022 7.7e-07 57.8 91 29.7
Medtr4g052090 Medicago truncatula HOM05D000003 ORTHO05D000006 7.7e-07 57.8 88 39.8
Sabra07G0074300 Salix brachista HOM05D000609 ORTHO05D000462 7.7e-07 57.8 98 30.6
Atru.chr5.1996 Acer truncatum HOM05D000003 ORTHO05D000022 1.0e-06 57.4 93 32.3
CSS0002074 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.0e-06 57.4 107 26.2
CSS0009370 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.0e-06 57.4 97 33.0
CSS0038037 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.0e-06 57.4 97 33.0
Lalb_Chr05g0214691 Lupinus albus HOM05D008718 ORTHO05D010957 1.0e-06 57.4 74 35.1
TPR.G2830 Trifolium pratense HOM05D008718 ORTHO05D010957 1.0e-06 57.4 72 36.1
Atru.chr10.1248 Acer truncatum HOM05D000003 ORTHO05D000022 1.3e-06 57.0 73 34.2
CSS0016144 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.3e-06 57.0 73 38.4
Lj8C275T19 Lonicera japonica HOM05D016027 ORTHO05D000022 1.3e-06 57.0 70 41.4
TPR.G33754 Trifolium pratense HOM05D005905 ORTHO05D005996 1.3e-06 57.0 58 46.6
Atru.chr1.776 Acer truncatum HOM05D000003 ORTHO05D000004 1.7e-06 56.6 83 34.9
Atru.chr4.899 Acer truncatum HOM05D000003 ORTHO05D000022 1.7e-06 56.6 86 30.2
CSS0006381 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.7e-06 56.6 101 35.6
CSS0041590 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.7e-06 56.6 86 38.4
Lj9P217T13 Lonicera japonica HOM05D000003 ORTHO05D000022 1.7e-06 56.6 68 41.2
QL03p010769 Quercus lobata HOM05D000155 ORTHO05D000022 1.7e-06 56.6 91 30.8
Atru.chr1.1701 Acer truncatum HOM05D000003 ORTHO05D000022 2.2e-06 56.2 73 35.6
PGSC0003DMG400043004 Solanum tuberosum HOM05D000155 ORTHO05D000022 2.2e-06 56.2 84 34.5
vmacro09610 Vaccinium macrocarpon HOM05D000003 ORTHO05D000007 2.2e-06 56.2 86 34.9
EL10Ac3g05611 Beta vulgaris HOM05D000003 ORTHO05D000022 2.9e-06 55.8 86 33.7
CSS0007605 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 2.9e-06 55.8 99 26.3
CSS0010509 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 2.9e-06 55.8 109 27.5
Atru.chr13.2391 Acer truncatum HOM05D000003 ORTHO05D000022 3.8e-06 55.5 87 33.3
CSS0033039 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 3.8e-06 55.5 86 34.9
Sabra17G0024600 Salix brachista HOM05D000003 ORTHO05D000022 3.8e-06 55.5 111 30.6
Sabra17G0024800 Salix brachista HOM05D000003 ORTHO05D000022 3.8e-06 55.5 111 31.5
Sabra17G0024900 Salix brachista HOM05D000003 ORTHO05D000022 3.8e-06 55.5 111 31.5
Solyc07g056380.1 Solanum lycopersicum HOM05D000003 ORTHO05D000022 3.8e-06 55.5 111 37.8
Atru.chr2.1762 Acer truncatum HOM05D000003 ORTHO05D000022 5.0e-06 55.1 83 34.9
CSS0049418 Camellia sinensis var. sinensis HOM05D001185 ORTHO05D003777 5.0e-06 55.1 94 28.7
COL.COLO4_02246 Corchorus olitorius HOM05D030362 ORTHO05D025138 5.0e-06 55.1 73 35.6
Medtr6g024185 Medicago truncatula HOM05D007995 ORTHO05D001819 5.0e-06 55.1 46 52.2
PGSC0003DMG400039694 Solanum tuberosum HOM05D000155 ORTHO05D000022 5.0e-06 55.1 85 31.8
COL.COLO4_00348 Corchorus olitorius HOM05D000003 ORTHO05D025138 6.5e-06 54.7 97 32.0
Nitab4.5_0000593g0300 Nicotiana tabacum HOM05D000003 ORTHO05D000022 6.5e-06 54.7 67 40.3
QL01p016530 Quercus lobata HOM05D000003 ORTHO05D000022 6.5e-06 54.7 78 33.3
TPR.G17189 Trifolium pratense HOM05D004968 ORTHO05D005922 6.5e-06 54.7 67 41.8
Lj5g0005529 Lotus japonicus HOM05D000003 ORTHO05D000022 8.5e-06 54.3 83 33.7
Nn4g24392 Nelumbo nucifera HOM05D065314 ORTHO05D022940 8.5e-06 54.3 82 30.5
Nitab4.5_0014215g0010 Nicotiana tabacum HOM05D000003 ORTHO05D000022 8.5e-06 54.3 98 38.8
Thecc.10G084500 Theobroma cacao HOM05D000003 ORTHO05D011148 8.5e-06 54.3 71 36.6


User provided reference genes

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