Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_02194 Corchorus olitorius HOM05D001568 ORTHO05D009161 1.8e-125 452.6 228 100.0
AagrBONN_evm.TU.Sc2ySwM_117.3519 Anthoceros agrestis HOM05D001568 ORTHO05D009161 5.2e-16 89.0 105 41.0
Pp3c10_11040 Physcomitrium patens HOM05D001568 ORTHO05D009161 1.5e-15 87.4 101 42.6
SEGI_07672 Sequoiadendron giganteum HOM05D001568 ORTHO05D009161 2.0e-15 87.0 89 48.3
Mapoly0117s0004 Marchantia polymorpha HOM05D001568 ORTHO05D009161 2.9e-14 83.2 102 39.2
CBR_g38178 Chara braunii HOM05D001568 ORTHO05D009161 5.4e-13 79.0 101 43.6
TWI23G0417 Tripterygium wilfordii HOM05D001568 ORTHO05D009161 3.5e-12 76.3 104 42.3
CSS0003584 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D009161 7.8e-12 75.1 122 40.2
CANSAT25G2862 Cannabis sativa HOM05D001568 ORTHO05D009161 1.0e-11 74.7 102 43.1
Cre12.g497650 Chlamydomonas reinhardtii HOM05D001568 ORTHO05D009161 1.0e-11 74.7 120 37.5
BcaC06g36001 Brassica carinata HOM05D001568 ORTHO05D009161 1.3e-11 74.3 102 43.1
A07p05700 Brassica napus HOM05D001568 ORTHO05D009161 1.3e-11 74.3 102 43.1
A07p05850 Brassica napus HOM05D001568 ORTHO05D009161 1.3e-11 74.3 102 43.1
C07p09120 Brassica napus HOM05D001568 ORTHO05D009161 1.3e-11 74.3 102 43.1
BolC7t41323H Brassica oleracea HOM05D001568 ORTHO05D009161 1.3e-11 74.3 102 43.1
BraA07t28378Z Brassica rapa HOM05D001568 ORTHO05D009161 1.3e-11 74.3 102 43.1
BraA07t28366Z Brassica rapa HOM05D001568 ORTHO05D009161 3.0e-11 73.2 103 42.7
Gorai.013G051500 Gossypium raimondii HOM05D001568 ORTHO05D009161 3.9e-11 72.8 103 39.8
Gohir.D13G046000 Gossypium hirsutum HOM05D001568 ORTHO05D009161 5.1e-11 72.4 103 39.8
Manes.10G086600 Manihot esculenta HOM05D001568 ORTHO05D009161 6.6e-11 72.0 102 39.2
TWI59G0351 Tripterygium wilfordii HOM05D001568 ORTHO05D009161 6.6e-11 72.0 104 40.4
Gohir.A13G047700 Gossypium hirsutum HOM05D001568 ORTHO05D009161 1.1e-10 71.2 103 38.8
EL10Ac1g00245 Beta vulgaris HOM05D001568 ORTHO05D009161 1.5e-10 70.9 104 42.3
Duzib132G0829 Durio zibethinus HOM05D001568 ORTHO05D009161 1.5e-10 70.9 103 37.9
Carub.0003s2869 Capsella rubella HOM05D001568 ORTHO05D009161 1.9e-10 70.5 103 39.8
COL.COLO4_32488 Corchorus olitorius HOM05D001568 ORTHO05D009161 1.9e-10 70.5 106 38.7
Actinidia27999 Actinidia chinensis HOM05D001568 ORTHO05D009161 2.5e-10 70.1 94 43.6
Ah.08g217180 Amaranthus hybridus HOM05D001035 ORTHO05D001045 2.5e-10 70.1 104 37.5
Duzib248G0869 Durio zibethinus HOM05D001568 ORTHO05D009161 2.5e-10 70.1 103 38.8
Nitab4.5_0001458g0020 Nicotiana tabacum HOM05D001568 ORTHO05D009161 3.3e-10 69.7 102 39.2
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 4.3e-10 69.3 102 40.2
Prupe.8G149700 Prunus persica HOM05D001568 ORTHO05D009161 4.3e-10 69.3 102 40.2
PGR142G3835 Punica granatum HOM05D001568 ORTHO05D009161 5.6e-10 68.9 104 41.3
vmacro22256 Vaccinium macrocarpon HOM05D001568 ORTHO05D009161 5.6e-10 68.9 102 43.1
CDE07G0917 Ceratophyllum demersum HOM05D001568 ORTHO05D009161 9.5e-10 68.2 102 39.2
PSO541G2903 Papaver somniferum HOM05D001568 ORTHO05D009161 1.2e-09 67.8 102 37.3
Potri.009G085700 Populus trichocarpa HOM05D001568 ORTHO05D009161 1.2e-09 67.8 102 39.2
Thhalv10023010m.g Eutrema salsugineum HOM05D001568 ORTHO05D009161 1.6e-09 67.4 102 38.2
MCO07G364 Micromonas commoda HOM05D001568 ORTHO05D009161 1.6e-09 67.4 132 31.1
CiPaw.06G164200 Carya illinoinensis HOM05D001568 ORTHO05D009161 2.1e-09 67.0 102 38.2
Peaxi162Scf00003g02812 Petunia axillaris HOM05D001568 ORTHO05D009161 2.1e-09 67.0 102 39.2
PSO675G4557 Papaver somniferum HOM05D001568 ORTHO05D009161 2.8e-09 66.6 102 36.3
ClCG10G010070 Citrullus lanatus HOM05D001568 ORTHO05D009161 3.6e-09 66.2 103 41.7
MELO3C018021.2 Cucumis melo HOM05D001568 ORTHO05D009161 4.7e-09 65.9 103 41.7
Sc01g0002530 Simmondsia chinensis HOM05D001568 ORTHO05D009161 4.7e-09 65.9 102 41.2
AUR62004510 Chenopodium quinoa HOM05D001568 ORTHO05D009161 6.2e-09 65.5 94 43.6
TAR625G0338 Trochodendron aralioides HOM05D001568 ORTHO05D009161 6.2e-09 65.5 103 37.9
AUR62023444 Chenopodium quinoa HOM05D001568 ORTHO05D009161 8.1e-09 65.1 94 43.6
CsaV3_4G000110 Cucumis sativus L. HOM05D001568 ORTHO05D009161 8.1e-09 65.1 103 41.7
Nitab4.5_0011705g0020 Nicotiana tabacum HOM05D001568 ORTHO05D009161 8.1e-09 65.1 102 38.2
Rhsim05G0092800 Rhododendron simsii HOM05D001568 ORTHO05D009161 8.1e-09 65.1 90 43.3
Sabra09G0065800 Salix brachista HOM05D001568 ORTHO05D009161 8.1e-09 65.1 102 40.2
SHI05019 Sapria himalayana HOM05D001568 ORTHO05D009161 1.1e-08 64.7 102 40.2
THA.LOC104804397 Tarenaya hassleriana HOM05D001568 ORTHO05D009161 1.1e-08 64.7 102 37.3
AT2G14660 Arabidopsis thaliana HOM05D001568 ORTHO05D009161 1.4e-08 64.3 105 35.2
Nn5g30651 Nelumbo nucifera HOM05D001568 ORTHO05D009161 1.4e-08 64.3 103 37.9
Migut.B00461 Erythranthe guttata HOM05D001568 ORTHO05D009161 1.8e-08 63.9 102 38.2
Cpa.g.sc91.59 Carica papaya HOM05D001568 ORTHO05D009161 2.3e-08 63.5 102 38.2
Prupe.8G150000 Prunus persica HOM05D001568 ORTHO05D009161 2.3e-08 63.5 102 39.2
AL3G46300 Arabidopsis lyrata HOM05D001568 ORTHO05D009161 3.1e-08 63.2 104 36.5
Sed0014293 Sechium edule HOM05D001568 ORTHO05D009161 3.1e-08 63.2 103 38.8
HPP92_015706 Vanilla planifolia HOM05D001568 ORTHO05D009161 3.1e-08 63.2 103 34.0
HPP92_026656 Vanilla planifolia HOM05D001568 ORTHO05D009161 3.1e-08 63.2 103 34.0
PGSC0003DMG400012841 Solanum tuberosum HOM05D001568 ORTHO05D009161 4.0e-08 62.8 98 39.8
Solyc10g048190.1 Solanum lycopersicum HOM05D001568 ORTHO05D009161 5.2e-08 62.4 102 38.2
MSTRG.20237 Avicennia marina HOM05D001568 ORTHO05D009161 6.8e-08 62.0 102 38.2
Aa31LG8G12780 Aethionema arabicum HOM05D006229 ORTHO05D007190 8.9e-08 61.6 103 37.9
ATR0739G196 Amborella trichopoda HOM05D001568 ORTHO05D009161 8.9e-08 61.6 90 40.0
CAN.G1427.5 Capsicum annuum HOM05D001568 ORTHO05D009161 8.9e-08 61.6 102 37.3
Ciclev10030269m.g Citrus clementina HOM05D001568 ORTHO05D008804 8.9e-08 61.6 102 36.3
unitig_0.g633 Utricularia gibba HOM05D001568 ORTHO05D009161 8.9e-08 61.6 102 36.3
PSO541G3645 Papaver somniferum HOM05D001568 ORTHO05D009161 1.2e-07 61.2 102 35.3
TPR.G8318 Trifolium pratense HOM05D001568 ORTHO05D009161 1.2e-07 61.2 102 39.2
BcaB05g22586 Brassica carinata HOM05D001568 ORTHO05D009161 1.5e-07 60.8 103 36.9
CARHR286340 Cardamine hirsuta HOM05D001568 ORTHO05D009161 1.5e-07 60.8 103 35.9
MBI16_g39097_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D009161 2.6e-07 60.1 90 38.9
Medtr5g005350 Medicago truncatula HOM05D001568 ORTHO05D009161 2.6e-07 60.1 102 39.2
Aqoxy5G00361 Aquilegia oxysepala HOM05D001568 ORTHO05D009161 5.8e-07 58.9 102 34.3
Glyma.01G241600 Glycine max HOM05D001568 ORTHO05D009161 5.8e-07 58.9 102 38.2
Lj1g0027535 Lotus japonicus HOM05D001568 ORTHO05D009161 9.9e-07 58.2 102 38.2
Sopen10g020220 Solanum pennellii HOM05D001568 ORTHO05D009161 9.9e-07 58.2 94 39.4
VMungo1215G1258 Vigna mungo HOM05D001568 ORTHO05D009161 9.9e-07 58.2 102 40.2
Cfa026913 Carpinus fangiana HOM05D001568 ORTHO05D009161 1.3e-06 57.8 140 32.1
Os03g0676100 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D009161 1.7e-06 57.4 112 37.5
Lsat_1_v5_gn_5_117140 Lactuca sativa HOM05D001568 ORTHO05D009161 2.2e-06 57.0 105 36.2
Psat4g228720 Pisum sativum HOM05D001568 ORTHO05D009161 4.9e-06 55.8 94 40.4


User provided reference genes

Program Settings