Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_01173 Corchorus olitorius HOM05D004164 ORTHO05D004891 8.2e-205 716.8 368 100.0
Pp3s30_626 Physcomitrium patens HOM05D004164 ORTHO05D004891 1.7e-53 214.2 343 37.6
PRCOL_00000119 Prasinoderma coloniale HOM05D004164 ORTHO05D004891 3.4e-17 93.6 289 29.1
Sc08g0003530 Simmondsia chinensis HOM05D004164 ORTHO05D004891 3.4e-17 93.6 293 30.0
AagrBONN_evm.TU.Sc2ySwM_228.2787 Anthoceros agrestis HOM05D004164 ORTHO05D004891 5.8e-17 92.8 283 30.0
Migut.B00589 Erythranthe guttata HOM05D004164 ORTHO05D004891 2.9e-16 90.5 283 30.4
Lj4g0000280 Lotus japonicus HOM05D004164 ORTHO05D004891 6.4e-16 89.4 269 31.6
THA.LOC104799917 Tarenaya hassleriana HOM05D004164 ORTHO05D004891 1.1e-15 88.6 283 29.3
SMO143G0159 Selaginella moellendorffii HOM05D004164 ORTHO05D004891 1.4e-15 88.2 163 37.4
MSTRG.20292 Avicennia marina HOM05D004164 ORTHO05D004891 1.9e-15 87.8 283 30.4
BcaB02g09775 Brassica carinata HOM05D004164 ORTHO05D004891 1.9e-15 87.8 255 30.6
ClCG09G015620 Citrullus lanatus HOM05D004164 ORTHO05D004891 1.9e-15 87.8 267 30.3
Thhalv10004559m.g Eutrema salsugineum HOM05D004164 ORTHO05D004891 1.9e-15 87.8 255 31.8
Lj6g0000010 Lotus japonicus HOM05D004164 ORTHO05D004891 1.9e-15 87.8 269 31.2
Pp3c2_200 Physcomitrium patens HOM05D004164 ORTHO05D004891 1.9e-15 87.8 150 39.3
Aa31LG1G17650 Aethionema arabicum HOM05D004164 ORTHO05D004891 2.5e-15 87.4 255 31.8
Lj5A235T51 Lonicera japonica HOM05D004164 ORTHO05D004891 2.5e-15 87.4 177 35.6
MD05G1043200 Malus domestica HOM05D004164 ORTHO05D004891 2.5e-15 87.4 269 30.5
AL8G41570 Arabidopsis lyrata HOM05D004164 ORTHO05D004891 3.2e-15 87.0 255 32.2
BcaC01g02680 Brassica carinata HOM05D004164 ORTHO05D004891 3.2e-15 87.0 255 31.0
C03p62030 Brassica napus HOM05D004164 ORTHO05D004891 3.2e-15 87.0 255 31.0
BolC3t18463H Brassica oleracea HOM05D004164 ORTHO05D004891 3.2e-15 87.0 255 31.0
Sp2g27310 Schrenkiella parvula HOM05D004164 ORTHO05D004891 4.2e-15 86.7 255 31.4
CSS0002795 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 5.5e-15 86.3 283 30.0
CSS0040430 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 5.5e-15 86.3 283 30.0
A06p30940 Brassica napus HOM05D004164 ORTHO05D004891 7.1e-15 85.9 255 30.2
BraA06t26033Z Brassica rapa HOM05D004164 ORTHO05D004891 7.1e-15 85.9 255 30.2
AL8G41600 Arabidopsis lyrata HOM05D004164 ORTHO05D004891 9.3e-15 85.5 255 31.8
AT5G64250 Arabidopsis thaliana HOM05D004164 ORTHO05D004891 9.3e-15 85.5 255 31.8
Ah.01g022180 Amaranthus hybridus HOM05D004164 ORTHO05D004891 1.2e-14 85.1 289 28.7
MELO3C018623.2 Cucumis melo HOM05D004164 ORTHO05D004891 1.2e-14 85.1 269 30.5
Aqoxy2G03733 Aquilegia oxysepala HOM05D004164 ORTHO05D004891 1.6e-14 84.7 280 28.6
CsaV3_7G006720 Cucumis sativus L. HOM05D004164 ORTHO05D004891 1.6e-14 84.7 269 30.5
Cfa005671 Carpinus fangiana HOM05D004164 ORTHO05D004891 2.1e-14 84.3 283 30.0
Gohir.A12G015600 Gossypium hirsutum HOM05D004164 ORTHO05D004891 2.1e-14 84.3 283 30.4
Manes.07G033800 Manihot esculenta HOM05D004164 ORTHO05D004891 2.1e-14 84.3 296 29.4
Sed0011830 Sechium edule HOM05D004164 ORTHO05D004891 2.1e-14 84.3 163 38.7
Hma1.2p1_0784F.1_g217100 Hydrangea macrophylla HOM05D004164 ORTHO05D004891 2.7e-14 84.0 289 29.8
CARHR278160 Cardamine hirsuta HOM05D004164 ORTHO05D004891 3.5e-14 83.6 245 31.0
Gorai.008G016000 Gossypium raimondii HOM05D004164 ORTHO05D004891 3.5e-14 83.6 255 31.4
TPR.G10321 Trifolium pratense HOM05D004164 ORTHO05D004891 3.5e-14 83.6 283 29.0
TAR365G1146 Trochodendron aralioides HOM05D004164 ORTHO05D004891 3.5e-14 83.6 277 29.6
CANSAT11G1236 Cannabis sativa HOM05D004164 ORTHO05D004891 4.6e-14 83.2 245 31.8
Carub.0008s2504 Capsella rubella HOM05D004164 ORTHO05D004891 4.6e-14 83.2 255 31.0
Glyma.08G178100 Glycine max HOM05D004164 ORTHO05D004891 4.6e-14 83.2 189 34.4
Gohir.D12G015900 Gossypium hirsutum HOM05D004164 ORTHO05D004891 4.6e-14 83.2 255 31.0
PSO210G6256 Papaver somniferum HOM05D004164 ORTHO05D004891 4.6e-14 83.2 268 29.5
arahy.Tifrunner.gnm1.ann1.XH6BES Arachis hypogaea HOM05D004164 ORTHO05D004891 6.0e-14 82.8 283 29.7
Eucgr.G00847 Eucalyptus grandis HOM05D004164 ORTHO05D004891 6.0e-14 82.8 283 29.7
Gohir.A04G114200 Gossypium hirsutum HOM05D004164 ORTHO05D004891 6.0e-14 82.8 283 29.7
PSO832G1962 Papaver somniferum HOM05D004164 ORTHO05D004891 6.0e-14 82.8 268 29.1
Psat5g128640 Pisum sativum HOM05D004164 ORTHO05D004891 6.0e-14 82.8 269 30.1
Hund00072 Selenicereus undatus HOM05D004164 ORTHO05D004891 6.0e-14 82.8 259 30.1
TWI14G1169 Tripterygium wilfordii HOM05D004164 ORTHO05D004891 6.0e-14 82.8 187 34.8
Cpa.g.sc42.29 Carica papaya HOM05D004164 ORTHO05D004891 7.9e-14 82.4 273 29.3
Medtr3g069190 Medicago truncatula HOM05D004164 ORTHO05D004891 7.9e-14 82.4 269 30.1
Phvul.006G205400 Phaseolus vulgaris HOM05D004164 ORTHO05D004891 1.0e-13 82.0 177 35.0
VMungo0540G2402 Vigna mungo HOM05D004164 ORTHO05D004891 1.0e-13 82.0 177 35.0
CiPaw.05G034200 Carya illinoinensis HOM05D004164 ORTHO05D004891 1.3e-13 81.6 283 29.0
Lj6g0021052 Lotus japonicus HOM05D004164 ORTHO05D004891 1.3e-13 81.6 272 29.8
Lalb_Chr20g0122971 Lupinus albus HOM05D004164 ORTHO05D004891 1.3e-13 81.6 177 35.6
PSO063G3797 Papaver somniferum HOM05D004164 ORTHO05D004891 1.8e-13 81.3 262 28.6
PSO507G0030 Papaver somniferum HOM05D004164 ORTHO05D004891 1.8e-13 81.3 268 28.7
Potri.017G051800 Populus trichocarpa HOM05D004164 ORTHO05D004891 1.8e-13 81.3 295 28.1
Ciclev10028812m.g Citrus clementina HOM05D004164 ORTHO05D004891 2.3e-13 80.9 284 29.9
PSO832G4194 Papaver somniferum HOM05D004164 ORTHO05D004891 2.3e-13 80.9 268 28.4
Peaxi162Scf01060g00013 Petunia axillaris HOM05D004164 ORTHO05D004891 2.3e-13 80.9 283 29.0
DCAR_001777 Daucus carota HOM05D004164 ORTHO05D004891 3.0e-13 80.5 239 31.4
PGR042G3604 Punica granatum HOM05D004164 ORTHO05D004891 3.0e-13 80.5 293 28.7
ECA234G4615 Erigeron canadensis HOM05D004164 ORTHO05D004891 3.9e-13 80.1 269 28.3
HanXRQChr10g0291731 Helianthus annuus HOM05D004164 ORTHO05D004891 3.9e-13 80.1 283 27.9
Ca_16502_v3 Cicer arietinum L. HOM05D004164 ORTHO05D004891 5.1e-13 79.7 269 28.6
Mapoly0043s0005 Marchantia polymorpha HOM05D004164 ORTHO05D004891 5.1e-13 79.7 144 41.0
TWI59G0238 Tripterygium wilfordii HOM05D004164 ORTHO05D004891 5.1e-13 79.7 149 38.9
PSO210G5660 Papaver somniferum HOM05D004164 ORTHO05D004891 6.7e-13 79.3 261 29.1
vmacro01837 Vaccinium macrocarpon HOM05D004164 ORTHO05D004891 6.7e-13 79.3 177 35.0
Actinidia24002 Actinidia chinensis HOM05D004164 ORTHO05D004891 8.7e-13 79.0 163 38.0
Cfa026765 Carpinus fangiana HOM05D004164 ORTHO05D004891 8.7e-13 79.0 293 26.3
Sabra17G0043400 Salix brachista HOM05D004164 ORTHO05D004891 8.7e-13 79.0 295 27.8
SabraUnG0002700 Salix brachista HOM05D004164 ORTHO05D004891 8.7e-13 79.0 295 27.8
ATR0782G002 Amborella trichopoda HOM05D004164 ORTHO05D004891 1.1e-12 78.6 177 36.2
Nn3g21861 Nelumbo nucifera HOM05D004164 ORTHO05D004891 1.1e-12 78.6 261 29.9
Nn4g25427 Nelumbo nucifera HOM05D004164 ORTHO05D004891 1.1e-12 78.6 261 27.6
Cfa023826 Carpinus fangiana HOM05D004164 ORTHO05D004891 1.5e-12 78.2 258 27.9
PSO832G0925 Papaver somniferum HOM05D004164 ORTHO05D004891 1.5e-12 78.2 263 30.0
Lsat_1_v5_gn_5_108141 Lactuca sativa HOM05D004164 ORTHO05D004891 1.9e-12 77.8 283 27.9
PSO507G0017 Papaver somniferum HOM05D004164 ORTHO05D004891 1.9e-12 77.8 268 28.0
PSO761G0590 Papaver somniferum HOM05D004164 ORTHO05D004891 1.9e-12 77.8 261 29.1
GSVIVG01015759001 Vitis vinifera HOM05D004164 ORTHO05D004891 1.9e-12 77.8 163 37.4
Atru.chr6.1169 Acer truncatum HOM05D004164 ORTHO05D004891 2.5e-12 77.4 164 36.6
arahy.Tifrunner.gnm1.ann1.IF3X13 Arachis hypogaea HOM05D004164 ORTHO05D004891 2.5e-12 77.4 240 32.9
SalBow5G1609 Salvia bowleyana HOM05D004164 ORTHO05D004891 2.5e-12 77.4 299 31.4
Zm00001eb033580 Zea mays HOM05D004164 ORTHO05D004891 3.3e-12 77.0 260 30.8
Nitab4.5_0000863g0200 Nicotiana tabacum HOM05D004164 ORTHO05D004891 4.3e-12 76.6 289 28.4
PSO782G1386 Papaver somniferum HOM05D004164 ORTHO05D004891 4.3e-12 76.6 262 27.9
Prupe.8G064000 Prunus persica HOM05D004164 ORTHO05D004891 4.3e-12 76.6 146 35.6
Thecc.02G135100 Theobroma cacao HOM05D004164 ORTHO05D004891 5.6e-12 76.3 149 38.3
PSO832G2156 Papaver somniferum HOM05D004164 ORTHO05D004891 7.4e-12 75.9 261 28.0
Rhsim11G0139400 Rhododendron simsii HOM05D004164 ORTHO05D004891 7.4e-12 75.9 177 33.9
RcHm_v2.0_Chr6g0271551 Rosa chinensis HOM05D004164 ORTHO05D004891 9.6e-12 75.5 283 27.9
SalBow5G4318 Salvia bowleyana HOM05D004164 ORTHO05D004891 9.6e-12 75.5 299 31.1
QL11p022503 Quercus lobata HOM05D004164 ORTHO05D004891 1.3e-11 75.1 245 29.8
PGSC0003DMG400012550 Solanum tuberosum HOM05D004164 ORTHO05D004891 1.3e-11 75.1 149 36.2
AUR62013150 Chenopodium quinoa HOM05D004164 ORTHO05D004891 1.6e-11 74.7 178 36.0
Solyc01g105370.4 Solanum lycopersicum HOM05D004164 ORTHO05D004891 1.6e-11 74.7 149 35.6
CAN.G523.53 Capsicum annuum HOM05D004164 ORTHO05D004891 2.8e-11 73.9 149 36.2
Sopen01g047880 Solanum pennellii HOM05D004164 ORTHO05D004891 2.8e-11 73.9 149 35.6
PSO781G0333 Papaver somniferum HOM05D004164 ORTHO05D004891 4.8e-11 73.2 137 36.5
AUR62010154 Chenopodium quinoa HOM05D004164 ORTHO05D004891 6.2e-11 72.8 286 28.7
Cc02_g21290 Coffea canephora HOM05D004164 ORTHO05D004891 6.2e-11 72.8 283 27.2
FAN18G3873 Fragaria x ananassa HOM05D004164 ORTHO05D004891 6.2e-11 72.8 269 29.4
PSO210G2683 Papaver somniferum HOM05D004164 ORTHO05D004891 8.2e-11 72.4 285 26.3
Duzib132G1201 Durio zibethinus HOM05D004164 ORTHO05D004891 1.1e-10 72.0 149 36.9
FvH4_5g07040 Fragaria vesca HOM05D004164 ORTHO05D004891 1.1e-10 72.0 198 31.8
FAN15G1714 Fragaria x ananassa HOM05D004164 ORTHO05D004891 1.1e-10 72.0 255 29.4
MCO10G397 Micromonas commoda HOM05D004164 ORTHO05D004891 1.8e-10 71.2 287 26.5
MBI18_g40410_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 2.4e-10 70.9 118 40.7
Os08g0485400 Oryza sativa ssp. japonica HOM05D004164 ORTHO05D004891 2.4e-10 70.9 273 28.9
Dinv24178 Davidia involucrata HOM05D004164 ORTHO05D004891 3.1e-10 70.5 163 34.4
TAR381G0722 Trochodendron aralioides HOM05D004164 ORTHO05D004891 3.1e-10 70.5 163 34.4
Aqoxy6G02071 Aquilegia oxysepala HOM05D004164 ORTHO05D004891 9.0e-10 68.9 283 27.6
PSO507G0015 Papaver somniferum HOM05D004164 ORTHO05D004891 9.0e-10 68.9 113 41.6
RcHm_v2.0_Chr6g0271711 Rosa chinensis HOM05D004164 ORTHO05D004891 2.0e-09 67.8 284 27.5
MBI02_g02171_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 2.6e-09 67.4 155 34.8
PRCOL_00002754 Prasinoderma coloniale HOM05D004164 ORTHO05D004891 3.4e-09 67.0 123 37.4
HPP92_004281 Vanilla planifolia HOM05D004164 ORTHO05D004891 3.4e-09 67.0 129 38.0
Prupe.8G063800 Prunus persica HOM05D004164 ORTHO05D004891 1.0e-08 65.5 93 46.2
Gorai.012G142600 Gossypium raimondii HOM05D004164 ORTHO05D004891 1.7e-08 64.7 283 27.6
PSO541G2216 Papaver somniferum HOM05D004164 ORTHO05D004891 1.7e-08 64.7 103 40.8
PSO173G0010 Papaver somniferum HOM05D004164 ORTHO05D004891 1.1e-07 62.0 164 29.9
PSO173G0166 Papaver somniferum HOM05D004164 ORTHO05D004891 1.1e-07 62.0 164 29.9
Cfa026889 Carpinus fangiana HOM05D004164 ORTHO05D004891 2.1e-06 57.8 256 26.6
Oeu007975.1 Olea europaea HOM05D004164 ORTHO05D004891 3.5e-06 57.0 320 25.0


User provided reference genes

Program Settings