Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_00809 Corchorus olitorius HOM05D004654 ORTHO05D005414 3.5e-80 301.6 155 100.0
Thecc.04G056200 Theobroma cacao HOM05D004654 ORTHO05D005414 2.9e-66 255.4 141 90.8
Duzib138G0480 Durio zibethinus HOM05D004654 ORTHO05D005414 5.1e-63 244.6 159 81.1
Gohir.A08G038100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.1e-57 226.9 152 77.0
Gohir.D08G048300 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.2e-56 223.4 152 77.6
Gorai.004G047800 Gossypium raimondii HOM05D004654 ORTHO05D005414 1.2e-56 223.4 152 77.6
Gohir.A12G053100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 4.0e-52 208.4 160 71.9
Gorai.008G054900 Gossypium raimondii HOM05D004654 ORTHO05D005414 5.2e-52 208.0 160 71.2
Gohir.D12G051600 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.5e-51 206.5 160 70.6
FAN19G2236 Fragaria x ananassa HOM05D004654 ORTHO05D005414 2.1e-32 142.9 171 53.2
FAN28G0174 Fragaria x ananassa HOM05D004654 ORTHO05D005414 2.7e-32 142.5 171 53.2
FAN28G0874 Fragaria x ananassa HOM05D004654 ORTHO05D005414 7.9e-32 141.0 171 53.2
QL02p054970 Quercus lobata HOM05D004654 ORTHO05D005414 2.3e-31 139.4 181 49.2
QL02p056026 Quercus lobata HOM05D004654 ORTHO05D005414 3.0e-31 139.0 181 49.2
arahy.Tifrunner.gnm1.ann1.C1RHT9 Arachis hypogaea HOM05D004654 ORTHO05D005414 1.1e-30 137.1 170 48.2
Atru.chr1.2194 Acer truncatum HOM05D004654 ORTHO05D005414 7.4e-30 134.4 185 46.5
FAN26G0407 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.6e-29 133.3 181 51.4
Cpa.g.sc108.18 Carica papaya HOM05D004654 ORTHO05D005414 2.8e-29 132.5 183 47.0
Manes.01G125100 Manihot esculenta HOM05D004654 ORTHO05D005414 4.8e-29 131.7 185 48.1
Glyma.11G204100 Glycine max HOM05D004654 ORTHO05D005414 1.4e-28 130.2 187 44.4
Ciclev10012875m.g Citrus clementina HOM05D004654 ORTHO05D005414 3.1e-28 129.0 168 48.2
VMungo0540G1596 Vigna mungo HOM05D004654 ORTHO05D005414 4.0e-28 128.6 175 46.3
Ca_15106_v3 Cicer arietinum L. HOM05D004654 ORTHO05D005414 5.3e-28 128.3 179 44.7
Manes.02G082600 Manihot esculenta HOM05D004654 ORTHO05D005414 1.2e-27 127.1 170 48.8
MD09G1282600 Malus domestica HOM05D004654 ORTHO05D005414 1.5e-27 126.7 178 46.1
Phvul.006G084100 Phaseolus vulgaris HOM05D004654 ORTHO05D005414 2.0e-27 126.3 181 45.9
MD17G1272400 Malus domestica HOM05D004654 ORTHO05D005414 2.6e-27 125.9 184 46.2
Prupe.3G011600 Prunus persica HOM05D004654 ORTHO05D005414 2.6e-27 125.9 169 46.7
Glyma.18G046900 Glycine max HOM05D004654 ORTHO05D005414 3.4e-27 125.6 176 46.0
AT1G65720 Arabidopsis thaliana HOM05D004654 ORTHO05D005414 7.6e-27 124.4 174 50.0
Lj6g0008387 Lotus japonicus HOM05D004654 ORTHO05D005414 2.2e-26 122.9 174 47.7
GSVIVG01005258001 Vitis vinifera HOM05D004654 ORTHO05D005414 2.2e-26 122.9 154 48.1
Cfa008008 Carpinus fangiana HOM05D004654 ORTHO05D005414 2.9e-26 122.5 183 45.4
Psat5g143960 Pisum sativum HOM05D004654 ORTHO05D005414 2.9e-26 122.5 179 44.1
Sp5g20670 Schrenkiella parvula HOM05D004654 ORTHO05D005414 2.9e-26 122.5 184 50.0
AL2G22850 Arabidopsis lyrata HOM05D004654 ORTHO05D005414 4.9e-26 121.7 164 49.4
CANSAT78G0950 Cannabis sativa HOM05D004654 ORTHO05D005414 6.5e-26 121.3 186 43.5
CiPaw.07G102900 Carya illinoinensis HOM05D004654 ORTHO05D005414 6.5e-26 121.3 188 42.0
CiPaw.13G067300 Carya illinoinensis HOM05D004654 ORTHO05D005414 6.5e-26 121.3 193 42.5
Haze_14051 Corylus avellana HOM05D004654 ORTHO05D005414 6.5e-26 121.3 185 46.5
Carub.0002s1154 Capsella rubella HOM05D004654 ORTHO05D005414 1.9e-25 119.8 181 48.6
Medtr3g064040 Medicago truncatula HOM05D004654 ORTHO05D005414 1.9e-25 119.8 177 44.6
CiPaw.03G008900 Carya illinoinensis HOM05D004654 ORTHO05D005414 2.5e-25 119.4 188 42.6
TPR.G37307 Trifolium pratense HOM05D004654 ORTHO05D005414 2.5e-25 119.4 173 43.9
Thhalv10019176m.g Eutrema salsugineum HOM05D004654 ORTHO05D005414 3.2e-25 119.0 189 45.5
Aa31LG2G2610 Aethionema arabicum HOM05D004654 ORTHO05D005414 5.5e-25 118.2 187 45.5
BolC6t39010H Brassica oleracea HOM05D004654 ORTHO05D005414 9.3e-25 117.5 179 48.0
A07p32950 Brassica napus HOM05D004654 ORTHO05D005414 1.2e-24 117.1 179 49.7
PGR004G1881 Punica granatum HOM05D004654 ORTHO05D005414 1.6e-24 116.7 194 42.3
BraA07t30922Z Brassica rapa HOM05D004654 ORTHO05D005414 2.1e-24 116.3 180 48.9
arahy.Tifrunner.gnm1.ann1.RSI5EI Arachis hypogaea HOM05D004654 ORTHO05D005414 6.0e-24 114.8 172 43.0
CARHR057580 Cardamine hirsuta HOM05D004654 ORTHO05D005414 6.0e-24 114.8 170 47.6
C06p39170 Brassica napus HOM05D004654 ORTHO05D005414 1.0e-23 114.0 181 47.0
Gohir.A04G103050 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.0e-23 114.0 75 76.0
FAN23G2643 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.3e-23 113.6 130 54.6
THA.LOC104805666 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 1.8e-23 113.2 190 46.3
CiPaw.03G260700 Carya illinoinensis HOM05D004654 ORTHO05D005414 2.3e-23 112.8 162 44.4
Sabra17G0119000 Salix brachista HOM05D004654 ORTHO05D005414 6.7e-23 111.3 182 46.7
Potri.017G142100 Populus trichocarpa HOM05D004654 ORTHO05D005414 1.9e-22 109.8 180 44.4
THA.LOC104822158 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 3.3e-22 109.0 189 43.9
PSO566G0049 Papaver somniferum HOM05D004654 ORTHO05D005414 5.7e-22 108.2 192 39.6
PSO566G0349 Papaver somniferum HOM05D004654 ORTHO05D005414 5.7e-22 108.2 192 39.6
PSO782G3544 Papaver somniferum HOM05D004654 ORTHO05D005414 2.1e-21 106.3 196 40.8
BolC2t08298H Brassica oleracea HOM05D004654 ORTHO05D005414 6.2e-21 104.8 168 48.8
MBI03_g34062_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 6.2e-21 104.8 132 46.2
Sabra04G0052000 Salix brachista HOM05D004654 ORTHO05D005414 8.2e-21 104.4 186 41.9
A02p13350 Brassica napus HOM05D004654 ORTHO05D005414 1.1e-20 104.0 152 50.7
BraA02t06392Z Brassica rapa HOM05D004654 ORTHO05D005414 1.1e-20 104.0 152 50.7
Potri.004G078500 Populus trichocarpa HOM05D004654 ORTHO05D005414 1.1e-20 104.0 179 42.5
THA.LOC104823831 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 2.4e-20 102.8 188 42.6
TAR622G1006 Trochodendron aralioides HOM05D004654 ORTHO05D005414 6.9e-20 101.3 161 41.0
Hma1.2p1_0034F.1_g021540 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 9.0e-20 100.9 182 42.3
MBI03_g05124_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 9.0e-20 100.9 133 45.1
BcaC03g14719 Brassica carinata HOM05D004654 ORTHO05D005414 3.4e-19 99.0 174 44.3
C02p21610 Brassica napus HOM05D004654 ORTHO05D005414 3.4e-19 99.0 174 44.3
Eucgr.F02926 Eucalyptus grandis HOM05D004654 ORTHO05D005414 3.4e-19 99.0 89 61.8
Ah.04g162850 Amaranthus hybridus HOM05D004654 ORTHO05D005414 1.3e-18 97.1 161 38.5
Lalb_Chr17g0345801 Lupinus albus HOM05D004654 ORTHO05D005414 1.3e-18 97.1 164 41.5
MD03G1273600 Malus domestica HOM05D004654 ORTHO05D005414 1.3e-18 97.1 150 43.3
HanXRQChr16g0532651 Helianthus annuus HOM05D004654 ORTHO05D005414 1.7e-18 96.7 149 43.6
arahy.Tifrunner.gnm1.ann1.70EH4T Arachis hypogaea HOM05D004654 ORTHO05D005414 3.8e-18 95.5 179 39.1
arahy.Tifrunner.gnm1.ann1.6F687N Arachis hypogaea HOM05D004654 ORTHO05D005414 6.5e-18 94.7 179 39.1
Haze_14062 Corylus avellana HOM05D004654 ORTHO05D005414 8.4e-18 94.4 137 48.9
AUR62004739 Chenopodium quinoa HOM05D004654 ORTHO05D005414 1.9e-17 93.2 187 39.0
ECA246G3021 Erigeron canadensis HOM05D004654 ORTHO05D005414 1.9e-17 93.2 155 41.9
AUR62037512 Chenopodium quinoa HOM05D004654 ORTHO05D005414 2.5e-17 92.8 180 37.8
Sed0014762 Sechium edule HOM05D004654 ORTHO05D005414 4.2e-17 92.0 81 65.4
Ah.06g191460 Amaranthus hybridus HOM05D004654 ORTHO05D005414 5.5e-17 91.7 162 38.3
vmacro23510 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 9.3e-17 90.9 187 38.0
vmacro20421 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 1.6e-16 90.1 169 39.6
HPP92_022519 Vanilla planifolia HOM05D004654 ORTHO05D005414 2.1e-16 89.7 170 36.5
MELO3C020251.2 Cucumis melo HOM05D004654 ORTHO05D005414 3.5e-16 89.0 163 37.4
TWI77G0610 Tripterygium wilfordii HOM05D004654 ORTHO05D005414 4.6e-16 88.6 167 38.3
Actinidia17131 Actinidia chinensis HOM05D004654 ORTHO05D005414 6.1e-16 88.2 188 38.3
CsaV3_3G021140 Cucumis sativus L. HOM05D004654 ORTHO05D005414 6.1e-16 88.2 162 38.9
ClCG05G011320 Citrullus lanatus HOM05D004654 ORTHO05D005414 7.9e-16 87.8 177 34.5
HanXRQChr15g0485191 Helianthus annuus HOM05D004654 ORTHO05D005414 7.9e-16 87.8 165 39.4
Lalb_Chr20g0117181 Lupinus albus HOM05D004654 ORTHO05D005414 7.9e-16 87.8 199 35.2
TAR374G0741 Trochodendron aralioides HOM05D004654 ORTHO05D005414 1.0e-15 87.4 200 36.5
Aqoxy5G02573 Aquilegia oxysepala HOM05D004654 ORTHO05D005414 1.8e-15 86.7 72 61.1
Rhsim08G0023400 Rhododendron simsii HOM05D004654 ORTHO05D005414 3.0e-15 85.9 165 39.4
Dinv03197 Davidia involucrata HOM05D004654 ORTHO05D005414 5.1e-15 85.1 146 37.7
HPP92_007306 Vanilla planifolia HOM05D004654 ORTHO05D005414 6.7e-15 84.7 120 45.8
Os03g0110300 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 1.5e-14 83.6 146 43.2
Lsat_1_v5_gn_8_113741 Lactuca sativa HOM05D004654 ORTHO05D005414 1.9e-14 83.2 174 36.8
Nitab4.5_0008713g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 1.9e-14 83.2 209 35.9
Lalb_Chr10g0103991 Lupinus albus HOM05D004654 ORTHO05D005414 2.5e-14 82.8 120 45.8
EL10Ac4g08895 Beta vulgaris HOM05D004654 ORTHO05D005414 4.3e-14 82.0 87 51.7
MBI06_g28670_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 7.4e-14 81.3 170 34.7
CDE07G1822 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 9.7e-14 80.9 151 42.4
Hma1.2p1_0085F.1_g044140 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 9.7e-14 80.9 126 40.5
Hma1.2p1_2924F.1_g330430 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 9.7e-14 80.9 126 40.5
Lsat_1_v5_gn_3_68821 Lactuca sativa HOM05D004654 ORTHO05D005414 9.7e-14 80.9 170 36.5
Peaxi162Scf00918g00026 Petunia axillaris HOM05D004654 ORTHO05D005414 9.7e-14 80.9 77 55.8
Os10g0483900 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 1.3e-13 80.5 197 33.5
Actinidia35698 Actinidia chinensis HOM05D004654 ORTHO05D005414 1.6e-13 80.1 165 38.8
Lsat_1_v5_gn_2_72380 Lactuca sativa HOM05D004654 ORTHO05D005414 1.6e-13 80.1 144 41.0
Cc07_g12430 Coffea canephora HOM05D004654 ORTHO05D005414 2.2e-13 79.7 209 35.4
Oeu024775.2 Olea europaea HOM05D004654 ORTHO05D005414 2.2e-13 79.7 182 36.8
CDE04G3704 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 3.7e-13 79.0 151 40.4
SalBow6G0287 Salvia bowleyana HOM05D004654 ORTHO05D005414 6.3e-13 78.2 163 38.0
Dinv28280 Davidia involucrata HOM05D004654 ORTHO05D005414 8.2e-13 77.8 65 60.0
TAR374G0450 Trochodendron aralioides HOM05D004654 ORTHO05D005414 1.1e-12 77.4 74 54.1
Solyc03g031950.3 Solanum lycopersicum HOM05D004654 ORTHO05D005414 1.4e-12 77.0 81 51.9
Sopen03g005810 Solanum pennellii HOM05D004654 ORTHO05D005414 1.4e-12 77.0 81 51.9
Zm00001eb221440 Zea mays HOM05D004654 ORTHO05D005414 1.4e-12 77.0 186 33.9
DCAR_014130 Daucus carota HOM05D004654 ORTHO05D005414 2.4e-12 76.3 143 38.5
Nn4g24900 Nelumbo nucifera HOM05D004654 ORTHO05D005414 2.4e-12 76.3 116 42.2
Oeu034013.1 Olea europaea HOM05D004654 ORTHO05D005414 2.4e-12 76.3 179 36.9
PGSC0003DMG400037923 Solanum tuberosum HOM05D004654 ORTHO05D005414 2.4e-12 76.3 210 33.3
Zm00001eb045470 Zea mays HOM05D004654 ORTHO05D005414 2.4e-12 76.3 175 34.3
PGSC0003DMG400024083 Solanum tuberosum HOM05D004654 ORTHO05D005414 4.1e-12 75.5 87 50.6
Zm00001eb000770 Zea mays HOM05D004654 ORTHO05D005414 6.9e-12 74.7 156 40.4
ATR0618G257 Amborella trichopoda HOM05D004654 ORTHO05D005414 1.2e-11 73.9 184 32.1
DCAR_002994 Daucus carota HOM05D004654 ORTHO05D005414 1.2e-11 73.9 168 38.7
Dinv19105 Davidia involucrata HOM05D004654 ORTHO05D005414 1.2e-11 73.9 180 37.8
Sc09g0004620 Simmondsia chinensis HOM05D004654 ORTHO05D005414 2.0e-11 73.2 186 34.4
unitig_85.g27201 Utricularia gibba HOM05D004654 ORTHO05D005414 5.9e-11 71.6 138 38.4
unitig_578.g16656 Utricularia gibba HOM05D004654 ORTHO05D005414 7.7e-11 71.2 79 50.6
Nitab4.5_0000235g0010 Nicotiana tabacum HOM05D004654 ORTHO05D005414 1.0e-10 70.9 215 31.2
HanXRQChr15g0486441 Helianthus annuus HOM05D004654 ORTHO05D005414 3.8e-10 68.9 166 36.7
SGA_v2.0_scaffold247G44889 Striga asiatica HOM05D004654 ORTHO05D005414 1.4e-09 67.0 150 36.7
unitig_90.g27472 Utricularia gibba HOM05D004654 ORTHO05D005414 4.2e-09 65.5 148 39.2
Lj5C23T4 Lonicera japonica HOM05D004654 ORTHO05D005414 7.2e-09 64.7 77 49.4
SGA_v2.0_scaffold8G04582 Striga asiatica HOM05D004654 ORTHO05D005414 9.4e-09 64.3 141 35.5
Nitab4.5_0003016g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 1.6e-08 63.5 211 30.8
BcaB03g15322 Brassica carinata HOM05D004654 ORTHO05D005414 4.6e-08 62.0 64 62.5
DCAR_000947 Daucus carota HOM05D004654 ORTHO05D005414 7.9e-08 61.2 122 34.4
Peaxi162Scf00784g00044 Petunia axillaris HOM05D004654 ORTHO05D005414 1.0e-07 60.8 59 50.8
Migut.D00607 Erythranthe guttata HOM05D004654 ORTHO05D005414 1.8e-07 60.1 187 31.0


User provided reference genes

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