Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_00113 Corchorus olitorius HOM05D003247 ORTHO05D003974 1.9e-50 202.2 102 100.0
Ca_17516_v3 Cicer arietinum L. HOM05D003247 ORTHO05D003974 1.0e-40 169.9 96 85.4
Duzib205G1189 Durio zibethinus HOM05D003247 ORTHO05D003974 1.0e-40 169.9 90 94.4
arahy.Tifrunner.gnm1.ann1.1Z7M3S Arachis hypogaea HOM05D003247 ORTHO05D003974 1.8e-40 169.1 90 93.3
Lalb_Chr16g0390071 Lupinus albus HOM05D003247 ORTHO05D003974 1.8e-40 169.1 90 93.3
Duzib084G1173 Durio zibethinus HOM05D003247 ORTHO05D003974 3.0e-40 168.3 90 93.3
Lj4g0006056 Lotus japonicus HOM05D003247 ORTHO05D003974 3.0e-40 168.3 90 93.3
arahy.Tifrunner.gnm1.ann1.5U7DNF Arachis hypogaea HOM05D003247 ORTHO05D003974 4.0e-40 167.9 90 92.2
Lalb_Chr05g0222801 Lupinus albus HOM05D003247 ORTHO05D003974 4.0e-40 167.9 90 91.1
CiPaw.11G133400 Carya illinoinensis HOM05D003247 ORTHO05D003974 6.7e-40 167.2 90 92.2
MD06G1086400 Malus domestica HOM05D003247 ORTHO05D003974 6.7e-40 167.2 90 91.1
Glyma.08G015900 Glycine max HOM05D003247 ORTHO05D003974 8.8e-40 166.8 90 91.1
MD14G1107600 Malus domestica HOM05D003247 ORTHO05D003974 8.8e-40 166.8 90 91.1
Medtr8g098525 Medicago truncatula HOM05D003247 ORTHO05D003974 8.8e-40 166.8 90 92.2
Psat7g031800 Pisum sativum HOM05D003247 ORTHO05D003974 8.8e-40 166.8 90 91.1
TPR.G12767 Trifolium pratense HOM05D003247 ORTHO05D003974 8.8e-40 166.8 90 91.1
VMungo0251G1424 Vigna mungo HOM05D003247 ORTHO05D003974 8.8e-40 166.8 90 91.1
Haze_08801 Corylus avellana HOM05D003247 ORTHO05D003974 1.5e-39 166.0 90 91.1
MELO3C005688.2 Cucumis melo HOM05D003247 ORTHO05D003974 2.0e-39 165.6 90 91.1
AUR62017183 Chenopodium quinoa HOM05D003247 ORTHO05D003974 2.6e-39 165.2 96 83.3
Gohir.A03G018700 Gossypium hirsutum HOM05D003247 ORTHO05D003974 2.6e-39 165.2 88 93.2
Gorai.003G157400 Gossypium raimondii HOM05D003247 ORTHO05D003974 2.6e-39 165.2 88 93.2
HanXRQChr03g0086871 Helianthus annuus HOM05D003247 ORTHO05D003974 2.6e-39 165.2 96 84.4
Sabra01G0077100 Salix brachista HOM05D003247 ORTHO05D003974 3.3e-39 164.9 90 90.0
Zm00001eb038870 Zea mays HOM05D003247 ORTHO05D003974 3.3e-39 164.9 88 92.0
CANSAT35G0036 Cannabis sativa HOM05D003247 ORTHO05D003974 4.4e-39 164.5 90 91.1
Glyma.05G209200 Glycine max HOM05D003247 ORTHO05D003974 4.4e-39 164.5 90 90.0
C04p29680 Brassica napus HOM05D003247 ORTHO05D003974 5.7e-39 164.1 97 83.5
Thecc.03G281500 Theobroma cacao HOM05D003247 ORTHO05D003974 5.7e-39 164.1 90 90.0
TAR636G0433 Trochodendron aralioides HOM05D003247 ORTHO05D003974 5.7e-39 164.1 90 90.0
EL10Ac5g12795 Beta vulgaris HOM05D003247 ORTHO05D003974 7.5e-39 163.7 90 90.0
Gohir.A08G183600 Gossypium hirsutum HOM05D003247 ORTHO05D003974 7.5e-39 163.7 96 82.3
FAN08G0767 Fragaria x ananassa HOM05D003247 ORTHO05D003974 9.7e-39 163.3 90 90.0
FAN13G0605 Fragaria x ananassa HOM05D003247 ORTHO05D003974 9.7e-39 163.3 90 90.0
Nn6g33377 Nelumbo nucifera HOM05D003247 ORTHO05D003974 9.7e-39 163.3 90 87.8
PGR031G0275 Punica granatum HOM05D003247 ORTHO05D003974 9.7e-39 163.3 90 87.8
HPP92_025967 Vanilla planifolia HOM05D003247 ORTHO05D003974 9.7e-39 163.3 90 87.8
Atru.chr9.2165 Acer truncatum HOM05D003247 ORTHO05D003974 1.3e-38 162.9 90 88.9
Ah.12g051750 Amaranthus hybridus HOM05D003247 ORTHO05D003974 1.3e-38 162.9 90 88.9
Ciclev10018808m.g Citrus clementina HOM05D003247 ORTHO05D003974 1.3e-38 162.9 90 90.0
Dinv38927 Davidia involucrata HOM05D003247 ORTHO05D003974 1.3e-38 162.9 90 88.9
Migut.A00742 Erythranthe guttata HOM05D003247 ORTHO05D003974 1.3e-38 162.9 96 82.3
Eucgr.D01833 Eucalyptus grandis HOM05D003247 ORTHO05D003974 1.3e-38 162.9 90 87.8
Gohir.D03G150200 Gossypium hirsutum HOM05D003247 ORTHO05D003974 1.3e-38 162.9 88 92.0
Lalb_Chr09g0332971 Lupinus albus HOM05D003247 ORTHO05D003974 1.3e-38 162.9 90 90.0
Sc01g0005540 Simmondsia chinensis HOM05D003247 ORTHO05D003974 1.3e-38 162.9 90 88.9
BcaB07g31551 Brassica carinata HOM05D003247 ORTHO05D003974 1.7e-38 162.5 90 88.9
BcaC02g10366 Brassica carinata HOM05D003247 ORTHO05D003974 1.7e-38 162.5 90 88.9
A06p04610 Brassica napus HOM05D003247 ORTHO05D003974 1.7e-38 162.5 90 88.9
BolC4t24494H Brassica oleracea HOM05D003247 ORTHO05D003974 1.7e-38 162.5 90 88.9
BraA06t23665Z Brassica rapa HOM05D003247 ORTHO05D003974 1.7e-38 162.5 90 88.9
BraA06t25281Z Brassica rapa HOM05D003247 ORTHO05D003974 1.7e-38 162.5 90 88.9
CDE05G0892 Ceratophyllum demersum HOM05D003247 ORTHO05D003974 2.2e-38 162.2 90 87.8
AUR62010702 Chenopodium quinoa HOM05D003247 ORTHO05D003974 2.2e-38 162.2 96 82.3
FvH4_5g02730 Fragaria vesca HOM05D003247 ORTHO05D003974 2.2e-38 162.2 90 88.9
FAN18G0212 Fragaria x ananassa HOM05D003247 ORTHO05D003974 2.2e-38 162.2 90 88.9
HanXRQChr13g0416311 Helianthus annuus HOM05D003247 ORTHO05D003974 2.2e-38 162.2 90 87.8
QL12p032548 Quercus lobata HOM05D003247 ORTHO05D003974 2.2e-38 162.2 88 89.8
Aa31LG2G950 Aethionema arabicum HOM05D003247 ORTHO05D003974 2.8e-38 161.8 90 87.8
CARHR047420 Cardamine hirsuta HOM05D003247 ORTHO05D003974 2.8e-38 161.8 90 87.8
Thhalv10023233m.g Eutrema salsugineum HOM05D003247 ORTHO05D003974 2.8e-38 161.8 90 87.8
PSO063G5587 Papaver somniferum HOM05D003247 ORTHO05D003974 2.8e-38 161.8 90 88.9
PSO832G0897 Papaver somniferum HOM05D003247 ORTHO05D003974 2.8e-38 161.8 90 88.9
Phvul.002G290904 Phaseolus vulgaris HOM05D003247 ORTHO05D003974 2.8e-38 161.8 90 88.9
Potri.003G129500 Populus trichocarpa HOM05D003247 ORTHO05D003974 2.8e-38 161.8 90 88.9
TWI60G0271 Tripterygium wilfordii HOM05D003247 ORTHO05D003974 2.8e-38 161.8 90 87.8
AL2G11370 Arabidopsis lyrata HOM05D003247 ORTHO05D003974 3.7e-38 161.4 90 87.8
AT1G63770 Arabidopsis thaliana HOM05D003247 ORTHO05D003974 3.7e-38 161.4 90 87.8
BcaC08g43016 Brassica carinata HOM05D003247 ORTHO05D003974 3.7e-38 161.4 90 87.8
C06p02710 Brassica napus HOM05D003247 ORTHO05D003974 3.7e-38 161.4 90 87.8
BolC6t35397H Brassica oleracea HOM05D003247 ORTHO05D003974 3.7e-38 161.4 90 87.8
Carub.0002s0107 Capsella rubella HOM05D003247 ORTHO05D003974 3.7e-38 161.4 90 87.8
ATR0680G039 Amborella trichopoda HOM05D003247 ORTHO05D003974 4.8e-38 161.0 96 81.2
Rhsim02G0233100 Rhododendron simsii HOM05D003247 ORTHO05D003974 4.8e-38 161.0 90 86.7
RhsimUnG0160000 Rhododendron simsii HOM05D003247 ORTHO05D003974 4.8e-38 161.0 90 86.7
THA.LOC104809378 Tarenaya hassleriana HOM05D003247 ORTHO05D003974 4.8e-38 161.0 90 87.8
vmacro11386 Vaccinium macrocarpon HOM05D003247 ORTHO05D003974 4.8e-38 161.0 90 86.7
Aqoxy5G04015 Aquilegia oxysepala HOM05D003247 ORTHO05D003974 6.3e-38 160.6 96 82.3
CSS0019820 Camellia sinensis var. sinensis HOM05D003247 ORTHO05D003974 8.2e-38 160.2 90 87.8
CSS0047123 Camellia sinensis var. sinensis HOM05D003247 ORTHO05D003974 8.2e-38 160.2 90 87.8
Nn1g01570 Nelumbo nucifera HOM05D003247 ORTHO05D003974 8.2e-38 160.2 90 86.7
Actinidia01994 Actinidia chinensis HOM05D003247 ORTHO05D003974 1.1e-37 159.8 90 87.8
FAN04G2168 Fragaria x ananassa HOM05D003247 ORTHO05D003974 1.1e-37 159.8 90 88.9
Cpa.g.sc214.14 Carica papaya HOM05D003247 ORTHO05D003974 1.4e-37 159.5 90 85.6
Lj8A219G33 Lonicera japonica HOM05D003247 ORTHO05D003974 1.4e-37 159.5 90 85.6
SalBow1G5596 Salvia bowleyana HOM05D003247 ORTHO05D003974 1.4e-37 159.5 96 82.3
MSTRG.1858 Avicennia marina HOM05D003247 ORTHO05D003974 2.4e-37 158.7 90 85.6
Potri.001G102126 Populus trichocarpa HOM05D003247 ORTHO05D003974 2.4e-37 158.7 90 87.8
Hund14825 Selenicereus undatus HOM05D003247 ORTHO05D003974 2.4e-37 158.7 90 85.6
CAN.G774.61 Capsicum annuum HOM05D003247 ORTHO05D003974 3.1e-37 158.3 90 85.6
Dinv37625 Davidia involucrata HOM05D003247 ORTHO05D003974 4.1e-37 157.9 90 86.7
RcHm_v2.0_Chr7g0197201 Rosa chinensis HOM05D003247 ORTHO05D003974 4.1e-37 157.9 90 86.7
CsaV3_5G002690 Cucumis sativus L. HOM05D003247 ORTHO05D003974 5.3e-37 157.5 90 86.7
DCAR_008373 Daucus carota HOM05D003247 ORTHO05D003974 7.0e-37 157.1 88 85.2
GSVIVG01019731001 Vitis vinifera HOM05D003247 ORTHO05D003974 7.0e-37 157.1 90 83.3
Nitab4.5_0002975g0050 Nicotiana tabacum HOM05D003247 ORTHO05D003974 1.2e-36 156.4 90 84.4
Cc08_g14910 Coffea canephora HOM05D003247 ORTHO05D003974 2.0e-36 155.6 90 84.4
ECA240G1820 Erigeron canadensis HOM05D003247 ORTHO05D003974 2.0e-36 155.6 90 82.2
MBI17_g42619_MAGBIO Magnolia biondii HOM05D003247 ORTHO05D003974 2.0e-36 155.6 90 84.4
PSO210G5648 Papaver somniferum HOM05D003247 ORTHO05D003974 2.0e-36 155.6 88 86.4
Sabra01G0077200 Salix brachista HOM05D003247 ORTHO05D003974 2.0e-36 155.6 90 87.8
Lsat_1_v5_gn_6_86420 Lactuca sativa HOM05D003247 ORTHO05D003974 3.5e-36 154.8 88 83.0
Lalb_Chr05g0224671 Lupinus albus HOM05D003247 ORTHO05D003974 3.5e-36 154.8 96 78.1
Sopen08g029560 Solanum pennellii HOM05D003247 ORTHO05D003974 5.9e-36 154.1 90 82.2
EL10Ac9g20777 Beta vulgaris HOM05D003247 ORTHO05D003974 7.7e-36 153.7 90 83.3
Peaxi162Scf00119g00138 Petunia axillaris HOM05D003247 ORTHO05D003974 1.0e-35 153.3 90 82.2
Sed0003481 Sechium edule HOM05D003247 ORTHO05D003974 1.0e-35 153.3 90 85.6
Sed0014492 Sechium edule HOM05D003247 ORTHO05D003974 1.0e-35 153.3 90 84.4
Pp3c9_1240 Physcomitrium patens HOM05D003247 ORTHO05D003974 1.3e-35 152.9 94 79.8
PSO210G5645 Papaver somniferum HOM05D003247 ORTHO05D003974 1.7e-35 152.5 90 84.4
Pp3c15_1150 Physcomitrium patens HOM05D003247 ORTHO05D003974 1.7e-35 152.5 94 78.7
MBI18_g02832_MAGBIO Magnolia biondii HOM05D003247 ORTHO05D003974 2.2e-35 152.1 88 85.2
Manes.02G020950 Manihot esculenta HOM05D003247 ORTHO05D003974 2.2e-35 152.1 90 84.4
THA.LOC104817937 Tarenaya hassleriana HOM05D003247 ORTHO05D003974 6.5e-35 150.6 90 81.1
Migut.E01080 Erythranthe guttata HOM05D003247 ORTHO05D003974 1.5e-34 149.4 95 75.8
Pp3c26_1330 Physcomitrium patens HOM05D003247 ORTHO05D003974 3.2e-34 148.3 94 76.6
TPR.G28250 Trifolium pratense HOM05D003247 ORTHO05D003974 3.6e-33 144.8 91 81.3
unitig_0.g1141 Utricularia gibba HOM05D005096 ORTHO05D003974 8.0e-33 143.7 88 77.3
AagrBONN_evm.TU.Sc2ySwM_228.2960 Anthoceros agrestis HOM05D003247 ORTHO05D003974 1.8e-32 142.5 97 72.2
Mapoly0042s0035 Marchantia polymorpha HOM05D003247 ORTHO05D003974 1.8e-32 142.5 88 79.5
SMO119G0190 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 2.3e-32 142.1 90 77.8
SMO119G0209 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 6.8e-32 140.6 88 77.3
THA.LOC104815066 Tarenaya hassleriana HOM05D003247 ORTHO05D003974 6.8e-32 140.6 90 76.7
Lsat_1_v5_gn_6_86400 Lactuca sativa HOM05D003247 ORTHO05D003974 4.4e-31 137.9 98 67.3
SMO119G0357 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 5.7e-31 137.5 88 76.1
SMO351G0363 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 7.5e-31 137.1 90 75.6
Oeu011040.2 Olea europaea HOM05D003247 ORTHO05D003974 5.4e-29 131.0 112 62.5
MCO16G652 Micromonas commoda HOM05D003247 ORTHO05D003974 4.5e-28 127.9 94 63.8
CBR_g30015 Chara braunii HOM05D003247 ORTHO05D003974 1.7e-27 125.9 96 62.5
Nitab4.5_0001615g0030 Nicotiana tabacum HOM05D003247 ORTHO05D003974 1.9e-26 122.5 68 83.8
Prupe.5G103000 Prunus persica HOM05D003247 ORTHO05D003974 4.2e-26 121.3 66 86.4
Actinidia14574 Actinidia chinensis HOM05D003247 ORTHO05D003974 7.2e-26 120.6 69 79.7
Medtr8g098535 Medicago truncatula HOM05D003247 ORTHO05D003974 1.8e-24 115.9 69 76.8
CBR_g951 Chara braunii HOM05D003247 ORTHO05D003974 1.3e-22 109.8 96 54.2
Cre17.g736650 Chlamydomonas reinhardtii HOM05D003247 ORTHO05D003974 2.2e-22 109.0 86 62.8
TAR629G1189 Trochodendron aralioides HOM05D003247 ORTHO05D003974 2.2e-22 109.0 57 84.2
Ah.02g110410 Amaranthus hybridus HOM05D003247 ORTHO05D003974 8.3e-22 107.1 90 64.4
PRCOL_00005594 Prasinoderma coloniale HOM05D003247 ORTHO05D003974 3.5e-20 101.7 93 51.6
unitig_61.g26270 Utricularia gibba HOM05D003247 ORTHO05D003974 4.5e-20 101.3 63 73.0
TWI81G0748 Tripterygium wilfordii HOM05D003247 ORTHO05D003974 6.1e-17 90.9 58 84.5
Gorai.004G213400 Gossypium raimondii HOM05D003247 ORTHO05D003974 6.8e-16 87.4 56 82.1
Zm00001eb070300 Zea mays HOM05D003247 ORTHO05D003974 1.5e-15 86.3 40 97.5
Zm00001eb326750 Zea mays HOM05D003247 ORTHO05D003974 3.4e-15 85.1 43 88.4
MCO13G113 Micromonas commoda HOM05D003247 ORTHO05D003974 7.5e-15 84.0 88 50.0
SGA_v2.0_scaffold173G39167 Striga asiatica HOM05D003247 ORTHO05D003974 1.3e-14 83.2 40 90.0
Lsat_1_v5_gn_2_26081 Lactuca sativa HOM05D003247 ORTHO05D002149 4.6e-12 74.7 50 68.0
Cre04.g213250 Chlamydomonas reinhardtii HOM05D003247 ORTHO05D003974 1.0e-11 73.6 63 60.3
Lsat_1_v5_gn_5_94840 Lactuca sativa HOM05D002109 ORTHO05D002149 1.0e-11 73.6 50 68.0


User provided reference genes

Program Settings