Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_00075 Corchorus olitorius HOM05D004964 ORTHO05D005918 1.4e-170 602.8 298 100.0
Thecc.05G270700 Theobroma cacao HOM05D004964 ORTHO05D005918 2.5e-135 485.7 311 78.8
Duzib106G0302 Durio zibethinus HOM05D004964 ORTHO05D005918 1.9e-127 459.5 311 76.8
Gorai.004G249200 Gossypium raimondii HOM05D004964 ORTHO05D005918 5.1e-112 408.3 301 72.8
Gohir.D08G234400 Gossypium hirsutum HOM05D004964 ORTHO05D005918 6.6e-112 407.9 301 72.8
Gohir.A08G217400 Gossypium hirsutum HOM05D004964 ORTHO05D005918 2.1e-105 386.3 283 72.4
MD04G1230400 Malus domestica HOM05D004964 ORTHO05D005918 5.1e-96 355.1 301 62.1
GSVIVG01023502001 Vitis vinifera HOM05D004964 ORTHO05D005918 6.2e-94 348.2 321 61.1
Manes.08G139500 Manihot esculenta HOM05D004964 ORTHO05D005918 2.6e-92 342.8 305 60.7
RcHm_v2.0_Chr3g0449661 Rosa chinensis HOM05D004964 ORTHO05D005918 2.2e-91 339.7 308 59.1
Cfa006356 Carpinus fangiana HOM05D004964 ORTHO05D005918 9.3e-90 334.3 303 60.1
CiPaw.07G072600 Carya illinoinensis HOM05D004964 ORTHO05D005918 1.2e-89 334.0 308 58.4
Lj2A43G39 Lonicera japonica HOM05D004964 ORTHO05D005918 1.3e-88 330.5 311 59.5
Phvul.010G051000 Phaseolus vulgaris HOM05D004964 ORTHO05D005918 1.9e-87 326.6 324 54.3
VMungo0331G1958 Vigna mungo HOM05D004964 ORTHO05D005918 4.3e-87 325.5 324 54.9
Ciclev10020293m.g Citrus clementina HOM05D004964 ORTHO05D005918 1.6e-86 323.6 309 57.6
QL03p029974 Quercus lobata HOM05D004964 ORTHO05D005918 1.6e-86 323.6 300 59.0
CSS0014360 Camellia sinensis var. sinensis HOM05D004964 ORTHO05D005918 1.1e-85 320.9 318 56.6
FvH4_6g01921 Fragaria vesca HOM05D004964 ORTHO05D005918 1.4e-85 320.5 307 57.3
Glyma.07G113400 Glycine max HOM05D004964 ORTHO05D005918 1.4e-85 320.5 324 53.7
Sopen01g053470 Solanum pennellii HOM05D004964 ORTHO05D005918 1.8e-85 320.1 300 57.0
PGSC0003DMG401006195 Solanum tuberosum HOM05D004964 ORTHO05D005918 6.9e-85 318.2 300 56.0
Solyc01g111410.3 Solanum lycopersicum HOM05D004964 ORTHO05D005918 9.0e-85 317.8 300 56.7
FAN02G1272 Fragaria x ananassa HOM05D004964 ORTHO05D005918 2.0e-84 316.6 307 57.0
Ca_14064_v3 Cicer arietinum L. HOM05D004964 ORTHO05D005918 2.6e-84 316.2 324 53.4
FAN14G2205 Fragaria x ananassa HOM05D004964 ORTHO05D005918 2.6e-84 316.2 307 56.7
HanXRQChr07g0204481 Helianthus annuus HOM05D004964 ORTHO05D005918 3.4e-84 315.8 301 56.1
Lalb_Chr03g0040321 Lupinus albus HOM05D004964 ORTHO05D005918 4.5e-84 315.5 324 54.0
TAR362G0358 Trochodendron aralioides HOM05D004964 ORTHO05D005918 7.6e-84 314.7 326 54.3
Glyma.03G113500 Glycine max HOM05D004964 ORTHO05D005918 1.3e-83 313.9 326 54.0
QL03p029942 Quercus lobata HOM05D004964 ORTHO05D005918 2.9e-83 312.8 300 58.0
Dinv18988 Davidia involucrata HOM05D004964 ORTHO05D005918 3.8e-83 312.4 312 57.4
Prupe.6G350300 Prunus persica HOM05D004964 ORTHO05D005918 6.5e-83 311.6 283 58.0
arahy.Tifrunner.gnm1.ann1.J3Q9FM Arachis hypogaea HOM05D004964 ORTHO05D005918 8.4e-83 311.2 312 53.5
TPR.G17496 Trifolium pratense HOM05D004964 ORTHO05D005918 8.4e-83 311.2 325 53.5
CAN.G588.60 Capsicum annuum HOM05D004964 ORTHO05D005918 1.1e-82 310.8 300 55.0
Potri.013G047100 Populus trichocarpa HOM05D004964 ORTHO05D005918 1.1e-82 310.8 282 59.6
arahy.Tifrunner.gnm1.ann1.H9CC2T Arachis hypogaea HOM05D004964 ORTHO05D005918 1.4e-82 310.5 312 53.5
Cpa.g.sc162.40 Carica papaya HOM05D004964 ORTHO05D005918 2.5e-82 309.7 292 57.5
Cc02_g08800 Coffea canephora HOM05D004964 ORTHO05D005918 5.5e-82 308.5 315 54.6
Psat4g225120 Pisum sativum HOM05D004964 ORTHO05D005918 1.2e-81 307.4 325 51.1
Rhsim09G0136900 Rhododendron simsii HOM05D004964 ORTHO05D005918 4.6e-81 305.4 325 54.2
Oeu016533.1 Olea europaea HOM05D004964 ORTHO05D005918 7.9e-81 304.7 312 56.1
CsaV3_2G009770 Cucumis sativus L. HOM05D004964 ORTHO05D005918 1.0e-80 304.3 308 53.2
TPR.G33137 Trifolium pratense HOM05D004964 ORTHO05D005918 1.0e-80 304.3 325 51.7
Lj3g0015193 Lotus japonicus HOM05D004964 ORTHO05D005918 6.7e-80 301.6 324 50.6
MELO3C008708.2 Cucumis melo HOM05D004964 ORTHO05D005918 8.7e-80 301.2 308 52.6
Sed0000191 Sechium edule HOM05D004964 ORTHO05D005918 2.5e-79 299.7 308 53.2
A09p21080 Brassica napus HOM05D004964 ORTHO05D005918 2.8e-78 296.2 317 52.4
AT1G10095 Arabidopsis thaliana HOM05D004964 ORTHO05D005918 3.7e-78 295.8 312 52.6
A06p47210 Brassica napus HOM05D004964 ORTHO05D005918 4.8e-78 295.4 309 52.8
BraA09t37709Z Brassica rapa HOM05D004964 ORTHO05D005918 1.1e-77 294.3 317 52.1
BraA06t27592Z Brassica rapa HOM05D004964 ORTHO05D005918 1.4e-77 293.9 309 52.4
Lsat_1_v5_gn_8_24860 Lactuca sativa HOM05D004964 ORTHO05D005918 5.3e-77 292.0 298 53.7
Atru.chr2.987 Acer truncatum HOM05D004964 ORTHO05D005918 9.0e-77 291.2 311 51.8
BcaC06g34559 Brassica carinata HOM05D004964 ORTHO05D005918 1.2e-76 290.8 314 52.2
BolC7t43245H Brassica oleracea HOM05D004964 ORTHO05D005918 1.2e-76 290.8 314 52.2
MBI07_g16903_MAGBIO Magnolia biondii HOM05D004964 ORTHO05D005918 2.0e-76 290.0 330 50.9
Thhalv10000880m.g Eutrema salsugineum HOM05D004964 ORTHO05D005918 3.4e-76 289.3 300 54.0
Hund13719 Selenicereus undatus HOM05D004964 ORTHO05D005918 4.5e-76 288.9 297 54.2
Nn4g26424 Nelumbo nucifera HOM05D004964 ORTHO05D005918 5.9e-76 288.5 335 51.3
C07p27180 Brassica napus HOM05D004964 ORTHO05D005918 7.7e-76 288.1 314 51.9
Peaxi162Scf00407g00626 Petunia axillaris HOM05D004964 ORTHO05D005918 7.7e-76 288.1 285 56.1
QL03p030425 Quercus lobata HOM05D004964 ORTHO05D005918 1.3e-75 287.3 283 56.9
CARHR010210 Cardamine hirsuta HOM05D004964 ORTHO05D005918 2.9e-75 286.2 313 51.1
Medtr8g006785 Medicago truncatula HOM05D004964 ORTHO05D005918 5.0e-75 285.4 351 48.7
Migut.F00800 Erythranthe guttata HOM05D004964 ORTHO05D005918 6.5e-75 285.0 311 52.4
AUR62023306 Chenopodium quinoa HOM05D004964 ORTHO05D005918 1.1e-74 284.3 302 53.6
AL1G20790 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 2.5e-74 283.1 313 49.8
AUR62008995 Chenopodium quinoa HOM05D004964 ORTHO05D005918 9.4e-74 281.2 302 53.0
Sabra13G0043100 Salix brachista HOM05D004964 ORTHO05D005918 9.4e-74 281.2 301 53.2
BcaC06g31621 Brassica carinata HOM05D004964 ORTHO05D005918 2.1e-73 280.0 311 51.8
Eucgr.H04227 Eucalyptus grandis HOM05D004964 ORTHO05D005918 6.1e-73 278.5 297 51.9
Aqoxy5G02134 Aquilegia oxysepala HOM05D004964 ORTHO05D005918 1.8e-72 276.9 324 50.3
Carub.0001s0952 Capsella rubella HOM05D004964 ORTHO05D005918 2.3e-72 276.6 313 48.6
Aqoxy4G00649 Aquilegia oxysepala HOM05D004964 ORTHO05D005918 3.0e-72 276.2 325 50.2
FAN05G4025 Fragaria x ananassa HOM05D004964 ORTHO05D005918 8.8e-72 274.6 287 55.1
FAN14G5822 Fragaria x ananassa HOM05D004964 ORTHO05D005918 2.0e-71 273.5 287 54.7
FAN05G4826 Fragaria x ananassa HOM05D004964 ORTHO05D005918 3.3e-71 272.7 287 54.4
DCAR_022832 Daucus carota HOM05D004964 ORTHO05D005918 4.3e-71 272.3 299 51.2
BcaB07g30949 Brassica carinata HOM05D004964 ORTHO05D005918 1.4e-69 267.3 316 49.7
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 1.4e-69 267.3 307 51.5
CANSAT01G0497 Cannabis sativa HOM05D004964 ORTHO05D005918 1.5e-68 263.8 248 58.9
Sc10g0001190 Simmondsia chinensis HOM05D004964 ORTHO05D005918 2.6e-68 263.1 323 46.7
Hma1.2p1_1512F.1_g287895 Hydrangea macrophylla HOM05D004964 ORTHO05D005918 3.4e-68 262.7 246 56.9
vmacro10367 Vaccinium macrocarpon HOM05D004964 ORTHO05D005918 5.9e-68 261.9 308 51.9
FAN09G0282 Fragaria x ananassa HOM05D004964 ORTHO05D005918 2.7e-65 253.1 254 55.9
SGA_v2.0_scaffold26G11247 Striga asiatica HOM05D004964 ORTHO05D005918 4.7e-65 252.3 303 48.5
ECA233G3630 Erigeron canadensis HOM05D004964 ORTHO05D005918 1.1e-63 247.7 261 51.7
PSO210G1919 Papaver somniferum HOM05D004964 ORTHO05D005918 1.5e-63 247.3 314 46.8
AL1G47560 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 2.6e-63 246.5 293 48.8
MSTRG.14348 Avicennia marina HOM05D004964 ORTHO05D005918 1.3e-62 244.2 315 47.0
unitig_46.g18500 Utricularia gibba HOM05D004964 ORTHO05D005918 1.7e-62 243.8 314 47.8
unitig_47.g30763 Utricularia gibba HOM05D004964 ORTHO05D005918 1.7e-62 243.8 314 47.8
EL10Ac2g04577 Beta vulgaris HOM05D004964 ORTHO05D005918 3.7e-62 242.7 314 47.8
CSS0038343 Camellia sinensis var. sinensis HOM05D004964 ORTHO05D005918 2.4e-61 240.0 318 49.4
Nitab4.5_0013387g0040 Nicotiana tabacum HOM05D004964 ORTHO05D005918 4.1e-61 239.2 301 47.5
PSO210G0659 Papaver somniferum HOM05D004964 ORTHO05D005918 7.0e-61 238.4 314 46.5
Sp2g09220 Schrenkiella parvula HOM05D004964 ORTHO05D005918 1.2e-60 237.7 274 50.0
SGA_v2.0_scaffold177G39428 Striga asiatica HOM05D004964 ORTHO05D005918 3.5e-60 236.1 275 50.5
Aa31LG1G4780 Aethionema arabicum HOM05D004964 ORTHO05D005918 2.9e-59 233.0 283 48.8
HPP92_003061 Vanilla planifolia HOM05D004964 ORTHO05D005918 5.0e-59 232.3 317 45.1
ATR0736G161 Amborella trichopoda HOM05D004964 ORTHO05D005918 3.6e-57 226.1 322 43.8
QL03p030368 Quercus lobata HOM05D004964 ORTHO05D005918 3.7e-54 216.1 220 56.4
AL1G20660 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 8.2e-54 214.9 216 55.1
AL1G47570 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 3.1e-53 213.0 295 44.1
MD12G1248000 Malus domestica HOM05D004964 ORTHO05D005918 9.1e-53 211.5 184 60.9
QL03p030280 Quercus lobata HOM05D004964 ORTHO05D005918 3.8e-51 206.1 205 55.6
Nitab4.5_0005396g0030 Nicotiana tabacum HOM05D004964 ORTHO05D005918 2.3e-48 196.8 247 46.2
Zm00001eb229480 Zea mays HOM05D004964 ORTHO05D005918 3.4e-47 193.0 301 39.9
BcaC04g21837 Brassica carinata HOM05D004964 ORTHO05D005918 4.5e-44 182.6 161 59.6
Ah.10g037790 Amaranthus hybridus HOM05D004964 ORTHO05D005918 2.3e-40 170.2 185 53.0
C09p26820 Brassica napus HOM05D004964 ORTHO05D005918 6.3e-38 162.2 150 58.0
CDE04G2937 Ceratophyllum demersum HOM05D004964 ORTHO05D005918 4.1e-37 159.5 183 51.9
Hund12147 Selenicereus undatus HOM05D004964 ORTHO05D005918 5.4e-37 159.1 192 47.9
C07p27190 Brassica napus HOM05D004964 ORTHO05D005918 4.5e-36 156.0 218 47.7
BolC7t43246H Brassica oleracea HOM05D004964 ORTHO05D005918 4.5e-36 156.0 218 47.7
MD12G1248600 Malus domestica HOM05D004964 ORTHO05D005918 7.7e-36 155.2 142 59.9
AagrBONN_evm.TU.Sc2ySwM_340.245 Anthoceros agrestis HOM05D004964 ORTHO05D005918 1.3e-35 154.5 321 36.4
SalBow6G5984 Salvia bowleyana HOM05D004964 ORTHO05D005918 2.9e-35 153.3 378 33.9
Haze_04422 Corylus avellana HOM05D004964 ORTHO05D005918 5.0e-35 152.5 183 48.6
Mapoly0082s0051 Marchantia polymorpha HOM05D004964 ORTHO05D005918 1.5e-31 141.0 395 29.6
Pp3c7_7610 Physcomitrium patens HOM05D004964 ORTHO05D005918 1.5e-31 141.0 420 28.8
TPR.G15846 Trifolium pratense HOM05D004964 ORTHO05D005918 9.8e-31 138.3 164 47.6
Os01g0684800 Oryza sativa ssp. japonica HOM05D004964 ORTHO05D005918 3.7e-30 136.3 218 37.2
SMO146G0189 Selaginella moellendorffii HOM05D004964 ORTHO05D005918 1.2e-28 131.3 253 36.4
Pp3c11_21460 Physcomitrium patens HOM05D004964 ORTHO05D005918 3.5e-28 129.8 414 26.8
CARHR222860 Cardamine hirsuta HOM05D004964 ORTHO05D005918 1.5e-26 124.4 137 51.1
BolC9t55572H Brassica oleracea HOM05D004964 ORTHO05D005918 8.9e-24 115.2 113 53.1
Lsat_1_v5_gn_6_73440 Lactuca sativa HOM05D001771 ORTHO05D001876 5.4e-21 105.9 124 48.4
SEGI_14565 Sequoiadendron giganteum HOM05D004964 ORTHO05D005918 2.7e-20 103.6 168 37.5
SHI23132 Sapria himalayana HOM05D000024 ORTHO05D000007 4.6e-20 102.8 112 47.3
QL03p030145 Quercus lobata HOM05D004964 ORTHO05D005918 1.7e-19 100.9 109 49.5
RcHm_v2.0_Chr2g0095691 Rosa chinensis HOM05D004964 ORTHO05D005918 3.0e-19 100.1 67 70.1
arahy.Tifrunner.gnm1.ann1.A28SEL Arachis hypogaea HOM05D000231 ORTHO05D005918 1.9e-18 97.4 94 54.3
SGA_v2.0_scaffold26G11248 Striga asiatica HOM05D004964 ORTHO05D005918 3.3e-18 96.7 180 35.6
ClCG11G010620 Citrullus lanatus HOM05D004964 ORTHO05D005918 1.2e-17 94.7 76 59.2
BolC9t55571H Brassica oleracea HOM05D004964 ORTHO05D005918 7.5e-15 85.5 73 56.2
SEGI_33500 Sequoiadendron giganteum HOM05D004964 ORTHO05D005918 8.3e-14 82.0 108 43.5
CBR_g718 Chara braunii HOM05D004964 ORTHO05D005918 7.1e-13 79.0 153 34.6
Psat7g249360 Pisum sativum HOM05D001947 ORTHO05D021361 9.2e-13 78.6 80 52.5
Lsat_1_v5_gn_6_39820 Lactuca sativa HOM05D004964 ORTHO05D005918 7.3e-10 68.9 68 50.0
MD12G1248100 Malus domestica HOM05D004964 ORTHO05D005918 6.8e-08 62.4 76 50.0
MD12G1248900 Malus domestica HOM05D004964 ORTHO05D005918 4.4e-07 59.7 59 52.5
QL03p030283 Quercus lobata HOM05D004964 ORTHO05D005918 6.4e-06 55.8 45 60.0


User provided reference genes

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