Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE12G0833 Ceratophyllum demersum HOM05D003199 ORTHO05D003528 9.4e-74 280.4 176 100.0
FAN14G1306 Fragaria x ananassa HOM05D003199 ORTHO05D003528 7.3e-18 94.7 129 56.6
FvH4_6g53290 Fragaria vesca HOM05D003199 ORTHO05D003528 6.2e-17 91.7 130 56.9
RcHm_v2.0_Chr2g0175441 Rosa chinensis HOM05D003199 ORTHO05D003528 8.1e-17 91.3 178 44.9
Gorai.012G087400 Gossypium raimondii HOM05D003199 ORTHO05D003528 1.1e-16 90.9 133 59.4
FAN05G2482 Fragaria x ananassa HOM05D003199 ORTHO05D003528 1.8e-16 90.1 179 45.8
Gohir.D04G077600 Gossypium hirsutum HOM05D003199 ORTHO05D003528 3.1e-16 89.4 133 58.6
Gohir.A05G339100 Gossypium hirsutum HOM05D003199 ORTHO05D003528 5.3e-16 88.6 133 60.2
FAN02G1758 Fragaria x ananassa HOM05D003199 ORTHO05D003528 1.2e-15 87.4 179 45.3
CiPaw.12G035800 Carya illinoinensis HOM05D003199 ORTHO05D003528 2.6e-15 86.3 110 60.0
Glyma.19G090000 Glycine max HOM05D003199 ORTHO05D003528 9.9e-15 84.3 121 52.9
Migut.D01231 Erythranthe guttata HOM05D003199 ORTHO05D003528 1.7e-14 83.6 119 37.8
Nn1g07337 Nelumbo nucifera HOM05D003199 ORTHO05D003528 1.7e-14 83.6 124 48.4
Ciclev10016867m.g Citrus clementina HOM05D003199 ORTHO05D003528 2.2e-14 83.2 154 52.6
Eucgr.I01653 Eucalyptus grandis HOM05D003199 ORTHO05D003528 2.2e-14 83.2 126 42.1
HanXRQChr07g0198271 Helianthus annuus HOM05D003199 ORTHO05D003528 2.9e-14 82.8 115 63.5
Nitab4.5_0002911g0010 Nicotiana tabacum HOM05D003199 ORTHO05D003528 2.9e-14 82.8 125 36.0
MD17G1012600 Malus domestica HOM05D003199 ORTHO05D003528 3.8e-14 82.4 122 41.0
Nitab4.5_0000040g0380 Nicotiana tabacum HOM05D003199 ORTHO05D003528 3.8e-14 82.4 121 37.2
Aa31LG2G5470 Aethionema arabicum HOM05D003199 ORTHO05D003528 6.4e-14 81.6 109 43.1
Prupe.3G305100 Prunus persica HOM05D003199 ORTHO05D003528 6.4e-14 81.6 121 40.5
Aqoxy5G03579 Aquilegia oxysepala HOM05D003199 ORTHO05D003528 1.1e-13 80.9 169 36.1
PGR142G2189 Punica granatum HOM05D003199 ORTHO05D003528 1.1e-13 80.9 110 49.1
Sed0014935 Sechium edule HOM05D003199 ORTHO05D003528 1.9e-13 80.1 150 34.0
Cpa.g.sc1017.1 Carica papaya HOM05D003199 ORTHO05D003528 2.4e-13 79.7 147 53.7
Lalb_Chr24g0403341 Lupinus albus HOM05D003199 ORTHO05D003528 2.4e-13 79.7 121 49.6
PSO063G5134 Papaver somniferum HOM05D003199 ORTHO05D003528 2.4e-13 79.7 192 47.9
PSO782G3015 Papaver somniferum HOM05D003199 ORTHO05D003528 3.2e-13 79.3 191 44.0
THA.LOC104825617 Tarenaya hassleriana HOM05D003199 ORTHO05D003528 3.2e-13 79.3 147 49.7
CSS0036982 Camellia sinensis var. sinensis HOM05D003199 ORTHO05D003528 4.2e-13 79.0 109 62.4
Cc07_g00740 Coffea canephora HOM05D003199 ORTHO05D003528 4.2e-13 79.0 125 54.4
Glyma.17G181000 Glycine max HOM05D003199 ORTHO05D003528 4.2e-13 79.0 111 46.8
Phvul.001G094500 Phaseolus vulgaris HOM05D003199 ORTHO05D003528 4.2e-13 79.0 138 42.0
TAR374G1096 Trochodendron aralioides HOM05D003199 ORTHO05D003528 4.2e-13 79.0 187 46.5
VMungo1383G1719 Vigna mungo HOM05D003199 ORTHO05D003528 4.2e-13 79.0 175 39.4
Duzib205G0007 Durio zibethinus HOM05D003199 ORTHO05D003528 9.3e-13 77.8 111 55.9
Oeu011754.1 Olea europaea HOM05D003199 ORTHO05D003528 9.3e-13 77.8 111 39.6
CANSAT64G0211 Cannabis sativa HOM05D003199 ORTHO05D003528 1.2e-12 77.4 124 62.9
HanXRQChr05g0154721 Helianthus annuus HOM05D003199 ORTHO05D003528 1.2e-12 77.4 124 36.3
PGR083G2021 Punica granatum HOM05D003199 ORTHO05D003528 1.2e-12 77.4 113 61.1
TAR626G1428 Trochodendron aralioides HOM05D003199 ORTHO05D003528 1.2e-12 77.4 123 48.0
Lj1g0002355 Lotus japonicus HOM05D003199 ORTHO05D003528 1.6e-12 77.0 105 67.6
AUR62003498 Chenopodium quinoa HOM05D003199 ORTHO05D003528 2.1e-12 76.6 185 35.1
AUR62017813 Chenopodium quinoa HOM05D003199 ORTHO05D003528 2.1e-12 76.6 185 48.1
Glyma.05G077200 Glycine max HOM05D003199 ORTHO05D003528 2.7e-12 76.3 120 37.5
Glyma.19G071300 Glycine max HOM05D003199 ORTHO05D003528 2.7e-12 76.3 110 50.9
Nitab4.5_0005418g0050 Nicotiana tabacum HOM05D003199 ORTHO05D003528 2.7e-12 76.3 122 50.8
unitig_52.g17653 Utricularia gibba HOM05D003199 ORTHO05D003528 2.7e-12 76.3 118 57.6
Lj4g0002784 Lotus japonicus HOM05D003199 ORTHO05D003528 3.5e-12 75.9 110 36.4
ClCG05G013420 Citrullus lanatus HOM05D003199 ORTHO05D003528 6.0e-12 75.1 111 37.8
Haze_14863 Corylus avellana HOM05D003199 ORTHO05D003528 6.0e-12 75.1 123 54.5
EL10Ac6g15370 Beta vulgaris HOM05D003199 ORTHO05D003528 7.9e-12 74.7 170 50.6
HanXRQChr14g0450701 Helianthus annuus HOM05D003199 ORTHO05D003528 7.9e-12 74.7 104 62.5
Manes.15G159800 Manihot esculenta HOM05D003199 ORTHO05D003528 1.0e-11 74.3 175 46.9
Nitab4.5_0010637g0020 Nicotiana tabacum HOM05D003199 ORTHO05D003528 1.0e-11 74.3 122 48.4
MELO3C014875.2 Cucumis melo HOM05D003199 ORTHO05D003528 1.3e-11 73.9 167 31.7
Actinidia36194 Actinidia chinensis HOM05D003199 ORTHO05D003528 2.3e-11 73.2 111 64.0
Ah.02g120420 Amaranthus hybridus HOM05D003199 ORTHO05D003528 2.3e-11 73.2 164 48.8
Ah.03g147440 Amaranthus hybridus HOM05D003199 ORTHO05D003528 2.3e-11 73.2 181 49.7
MSTRG.4586 Avicennia marina HOM05D003199 ORTHO05D003528 2.3e-11 73.2 111 38.7
Lj2g0014633 Lotus japonicus HOM05D003199 ORTHO05D003528 3.0e-11 72.8 140 38.6
Lalb_Chr02g0157721 Lupinus albus HOM05D003199 ORTHO05D003528 5.1e-11 72.0 114 37.7
QL10p005054 Quercus lobata HOM05D003199 ORTHO05D003528 5.1e-11 72.0 127 36.2
CsaV3_3G027140 Cucumis sativus L. HOM05D003199 ORTHO05D003528 6.7e-11 71.6 160 31.9
Phvul.004G054500 Phaseolus vulgaris HOM05D003199 ORTHO05D003528 1.1e-10 70.9 140 52.1
SalBow4G2736 Salvia bowleyana HOM05D003199 ORTHO05D003528 1.1e-10 70.9 108 60.2
Actinidia05917 Actinidia chinensis HOM05D003199 ORTHO05D003528 1.5e-10 70.5 111 63.1
THA.LOC104823979 Tarenaya hassleriana HOM05D003199 ORTHO05D003528 1.5e-10 70.5 138 42.8
AUR62001279 Chenopodium quinoa HOM05D003199 ORTHO05D003528 1.9e-10 70.1 120 40.0
Gohir.D09G036100 Gossypium hirsutum HOM05D003199 ORTHO05D003528 1.9e-10 70.1 144 45.8
Gorai.006G041200 Gossypium raimondii HOM05D003199 ORTHO05D003528 1.9e-10 70.1 144 45.8
Potri.001G331600 Populus trichocarpa HOM05D003199 ORTHO05D003528 1.9e-10 70.1 105 43.8
Duzib147G1480 Durio zibethinus HOM05D003199 ORTHO05D003528 2.5e-10 69.7 148 45.3
Solyc03g110930.3 Solanum lycopersicum HOM05D003199 ORTHO05D003528 2.5e-10 69.7 121 42.1
ECA246G3163 Erigeron canadensis HOM05D003199 ORTHO05D003528 3.3e-10 69.3 163 36.8
MSTRG.3260 Avicennia marina HOM05D003199 ORTHO05D003528 4.3e-10 68.9 161 49.1
Lsat_1_v5_gn_2_94161 Lactuca sativa HOM05D003199 ORTHO05D003528 4.3e-10 68.9 140 50.7
CAN.G1491.4 Capsicum annuum HOM05D003199 ORTHO05D003528 5.6e-10 68.6 85 47.1
AUR62025727 Chenopodium quinoa HOM05D003199 ORTHO05D003528 5.6e-10 68.6 115 40.0
DCAR_002949 Daucus carota HOM05D003199 ORTHO05D003528 5.6e-10 68.6 140 47.1
DCAR_026209 Daucus carota HOM05D003199 ORTHO05D003528 7.4e-10 68.2 59 57.6
Oeu011963.1 Olea europaea HOM05D003199 ORTHO05D003528 7.4e-10 68.2 154 49.4
CiPaw.03G054500 Carya illinoinensis HOM05D003199 ORTHO05D003528 9.6e-10 67.8 117 42.7
Sc07g0004150 Simmondsia chinensis HOM05D003199 ORTHO05D003528 9.6e-10 67.8 143 55.9
arahy.Tifrunner.gnm1.ann1.S1U1UA Arachis hypogaea HOM05D003199 ORTHO05D003528 1.3e-09 67.4 48 66.7
arahy.Tifrunner.gnm1.ann1.VRH5T3 Arachis hypogaea HOM05D003199 ORTHO05D003528 1.3e-09 67.4 48 66.7
Eucgr.J02332 Eucalyptus grandis HOM05D003199 ORTHO05D003528 1.3e-09 67.4 112 57.1
Manes.17G103700 Manihot esculenta HOM05D003199 ORTHO05D003528 1.3e-09 67.4 111 63.1
Peaxi162Scf00420g00566 Petunia axillaris HOM05D003199 ORTHO05D003528 1.3e-09 67.4 118 33.9
RcHm_v2.0_Chr2g0088911 Rosa chinensis HOM05D003199 ORTHO05D003528 1.6e-09 67.0 113 39.8
RcHm_v2.0_Chr2g0088961 Rosa chinensis HOM05D003199 ORTHO05D003528 1.6e-09 67.0 113 39.8
Sopen03g030120 Solanum pennellii HOM05D003199 ORTHO05D003528 1.6e-09 67.0 145 40.0
RcHm_v2.0_Chr2g0089001 Rosa chinensis HOM05D003199 ORTHO05D003528 2.1e-09 66.6 113 39.8
TWI36G0480 Tripterygium wilfordii HOM05D003199 ORTHO05D003528 2.1e-09 66.6 48 64.6
Actinidia36788 Actinidia chinensis HOM05D003199 ORTHO05D003528 2.8e-09 66.2 105 51.4
CiPaw.04G036100 Carya illinoinensis HOM05D003199 ORTHO05D003528 2.8e-09 66.2 123 55.3
Hma1.2p1_0046F.1_g027530 Hydrangea macrophylla HOM05D003199 ORTHO05D003528 2.8e-09 66.2 59 57.6
PGSC0003DMG400015257 Solanum tuberosum HOM05D003199 ORTHO05D003528 2.8e-09 66.2 84 48.8
Cfa007237 Carpinus fangiana HOM05D003199 ORTHO05D003528 3.7e-09 65.9 122 57.4
Dinv38468 Davidia involucrata HOM05D003199 ORTHO05D003528 3.7e-09 65.9 48 62.5
Gohir.A09G035300 Gossypium hirsutum HOM05D003199 ORTHO05D003528 3.7e-09 65.9 145 46.9
Peaxi162Scf00089g00228 Petunia axillaris HOM05D003199 ORTHO05D003528 3.7e-09 65.9 145 38.6
Thecc.04G034700 Theobroma cacao HOM05D003199 ORTHO05D003528 3.7e-09 65.9 48 64.6
unitig_52.g17266 Utricularia gibba HOM05D000147 ORTHO05D001254 3.7e-09 65.9 109 35.8
Prupe.5G156900 Prunus persica HOM05D003199 ORTHO05D003528 4.8e-09 65.5 124 33.9
VMungo0464G0590 Vigna mungo HOM05D003199 ORTHO05D003528 4.8e-09 65.5 48 66.7
Sopen02g017200 Solanum pennellii HOM05D003199 ORTHO05D003528 6.2e-09 65.1 90 42.2
Solyc02g068090.3 Solanum lycopersicum HOM05D003199 ORTHO05D003528 8.1e-09 64.7 90 42.2
PGSC0003DMG400006976 Solanum tuberosum HOM05D003199 ORTHO05D003528 8.1e-09 64.7 90 42.2
COL.COLO4_17189 Corchorus olitorius HOM05D003199 ORTHO05D003528 1.1e-08 64.3 48 62.5
Glyma.05G044800 Glycine max HOM05D003199 ORTHO05D003528 1.4e-08 63.9 124 33.9
Sabra16G0212600 Salix brachista HOM05D003199 ORTHO05D003528 1.4e-08 63.9 48 62.5
Dinv33347 Davidia involucrata HOM05D003199 ORTHO05D003528 1.8e-08 63.5 108 60.2
Migut.F00072 Erythranthe guttata HOM05D003199 ORTHO05D003528 1.8e-08 63.5 48 56.2
Nn4g22460 Nelumbo nucifera HOM05D003199 ORTHO05D003528 1.8e-08 63.5 106 43.4
Ca_14371_v3 Cicer arietinum L. HOM05D003199 ORTHO05D003528 2.4e-08 63.2 120 34.2
Thecc.03G122900 Theobroma cacao HOM05D003199 ORTHO05D003528 2.4e-08 63.2 49 69.4
VMungo1215G0313 Vigna mungo HOM05D003199 ORTHO05D003528 3.1e-08 62.8 48 56.2
arahy.Tifrunner.gnm1.ann1.NFT2PX Arachis hypogaea HOM05D003199 ORTHO05D003528 4.0e-08 62.4 59 54.2
arahy.Tifrunner.gnm1.ann1.Z1YI97 Arachis hypogaea HOM05D003199 ORTHO05D003528 4.0e-08 62.4 59 54.2
Eucgr.B00147 Eucalyptus grandis HOM05D003199 ORTHO05D003528 4.0e-08 62.4 48 60.4
Eucgr.L01336 Eucalyptus grandis HOM05D003199 ORTHO05D003528 4.0e-08 62.4 48 60.4
Oeu011964.1 Olea europaea HOM05D003199 ORTHO05D003528 4.0e-08 62.4 92 42.4
Atru.chr6.2549 Acer truncatum HOM05D003199 ORTHO05D003528 5.3e-08 62.0 92 45.7
Atru.chr6.2557 Acer truncatum HOM05D003199 ORTHO05D003528 5.3e-08 62.0 92 45.7
AL5G16270 Arabidopsis lyrata HOM05D003199 ORTHO05D003528 6.9e-08 61.6 88 45.5
BcaC03g18193 Brassica carinata HOM05D003199 ORTHO05D003528 6.9e-08 61.6 113 45.1
C02p62560 Brassica napus HOM05D003199 ORTHO05D003528 6.9e-08 61.6 114 49.1
BolC2t12315H Brassica oleracea HOM05D003199 ORTHO05D003528 6.9e-08 61.6 113 45.1
Gohir.D07G057800 Gossypium hirsutum HOM05D003199 ORTHO05D003528 6.9e-08 61.6 49 65.3
TAR622G0507 Trochodendron aralioides HOM05D003199 ORTHO05D003528 6.9e-08 61.6 59 54.2
Ciclev10022507m.g Citrus clementina HOM05D003199 ORTHO05D003528 9.0e-08 61.2 117 46.2
CAN.G473.92 Capsicum annuum HOM05D003199 ORTHO05D003528 1.2e-07 60.8 96 43.8
Gohir.A07G053400 Gossypium hirsutum HOM05D003199 ORTHO05D003528 1.2e-07 60.8 49 65.3
Hma1.2p1_1278F.1_g272370 Hydrangea macrophylla HOM05D003199 ORTHO05D003528 1.5e-07 60.5 92 40.2
Lju41C52T19 Lonicera japonica HOM05D003199 ORTHO05D003528 1.5e-07 60.5 58 51.7
Carub.0005s0539 Capsella rubella HOM05D003199 ORTHO05D003528 2.0e-07 60.1 77 42.9
Gorai.001G061300 Gossypium raimondii HOM05D003199 ORTHO05D003528 2.0e-07 60.1 49 65.3
Oeu044613.1 Olea europaea HOM05D003199 ORTHO05D003528 2.0e-07 60.1 127 43.3
Atru.chr9.1013 Acer truncatum HOM05D003199 ORTHO05D003528 2.6e-07 59.7 109 42.2
AT3G27160 Arabidopsis thaliana HOM05D003199 ORTHO05D003528 2.6e-07 59.7 77 41.6
FAN08G2398 Fragaria x ananassa HOM05D003199 ORTHO05D003528 2.6e-07 59.7 123 32.5
QL02p071628 Quercus lobata HOM05D003199 ORTHO05D003528 3.4e-07 59.3 119 36.1
BraA02t08519Z Brassica rapa HOM05D003199 ORTHO05D003528 4.5e-07 58.9 49 61.2
CARHR148360 Cardamine hirsuta HOM05D003199 ORTHO05D003528 4.5e-07 58.9 93 41.9
ECA238G3857 Erigeron canadensis HOM05D003199 ORTHO05D003528 4.5e-07 58.9 88 64.8
Thhalv10004988m.g Eutrema salsugineum HOM05D003199 ORTHO05D003528 4.5e-07 58.9 93 40.9
Lsat_1_v5_gn_5_13260 Lactuca sativa HOM05D003199 ORTHO05D003528 4.5e-07 58.9 109 40.4
Sp2g16270 Schrenkiella parvula HOM05D003199 ORTHO05D003528 4.5e-07 58.9 93 41.9
Pp3c24_1550 Physcomitrium patens HOM05D003199 ORTHO05D003528 7.6e-07 58.2 52 51.9
EL10Ac7g18075 Beta vulgaris HOM05D003199 ORTHO05D003528 9.9e-07 57.8 103 36.9
BcaB07g30185 Brassica carinata HOM05D003199 ORTHO05D003528 9.9e-07 57.8 49 59.2
BcaC03g17429 Brassica carinata HOM05D003199 ORTHO05D003528 9.9e-07 57.8 49 59.2
C02p53770 Brassica napus HOM05D003199 ORTHO05D003528 9.9e-07 57.8 49 59.2
BolC2t11446H Brassica oleracea HOM05D003199 ORTHO05D003528 9.9e-07 57.8 49 59.2
MBI11_g19368_MAGBIO Magnolia biondii HOM05D003199 ORTHO05D003528 9.9e-07 57.8 120 36.7
Os02g0189000 Oryza sativa ssp. japonica HOM05D003199 ORTHO05D003528 9.9e-07 57.8 92 65.2
Thhalv10005605m.g Eutrema salsugineum HOM05D003199 ORTHO05D003528 1.7e-06 57.0 123 41.5
FvH4_5g07520 Fragaria vesca HOM05D003199 ORTHO05D003528 1.7e-06 57.0 134 41.0
Peaxi162Scf00881g00240 Petunia axillaris HOM05D003199 ORTHO05D003528 2.2e-06 56.6 98 41.8
HPP92_000205 Vanilla planifolia HOM05D050553 ORTHO05D003528 2.2e-06 56.6 122 36.1
HPP92_000223 Vanilla planifolia HOM05D050553 ORTHO05D003528 2.2e-06 56.6 122 36.1
Zm00001eb234790 Zea mays HOM05D003199 ORTHO05D003528 2.2e-06 56.6 97 54.6
BcaC04g23918 Brassica carinata HOM05D003199 ORTHO05D003528 2.9e-06 56.2 64 48.4
A09p03290 Brassica napus HOM05D003199 ORTHO05D003528 2.9e-06 56.2 64 48.4
C09p03490 Brassica napus HOM05D003199 ORTHO05D003528 2.9e-06 56.2 64 48.4
BolC9t53270H Brassica oleracea HOM05D003199 ORTHO05D003528 2.9e-06 56.2 64 48.4
BraA09t35967Z Brassica rapa HOM05D003199 ORTHO05D003528 2.9e-06 56.2 64 48.4
FAN04G2235 Fragaria x ananassa HOM05D003199 ORTHO05D003528 2.9e-06 56.2 134 43.3
Aa31LG1G18700 Aethionema arabicum HOM05D003199 ORTHO05D003528 4.9e-06 55.5 168 38.7
CBR_g8368 Chara braunii HOM05D003199 ORTHO05D003528 4.9e-06 55.5 63 47.6
SalBow1G6303 Salvia bowleyana HOM05D003199 ORTHO05D003528 4.9e-06 55.5 48 58.3
A02p35140 Brassica napus HOM05D003199 ORTHO05D003528 6.4e-06 55.1 78 43.6
BcaB04g19427 Brassica carinata HOM05D003199 ORTHO05D003528 8.4e-06 54.7 81 43.2


User provided reference genes

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