Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE12G0826 Ceratophyllum demersum HOM05D004220 ORTHO05D017372 1.3e-79 299.7 152 100.0
CDE07G1395 Ceratophyllum demersum HOM05D004220 ORTHO05D006217 1.5e-43 179.9 113 82.3
Hund08335 Selenicereus undatus HOM05D004220 ORTHO05D006217 1.2e-35 153.7 113 67.3
Nn4g24652 Nelumbo nucifera HOM05D004220 ORTHO05D006217 1.5e-35 153.3 113 65.5
TAR371G0933 Trochodendron aralioides HOM05D004220 ORTHO05D006217 2.0e-35 152.9 113 69.0
SalBow2G3345 Salvia bowleyana HOM05D004220 ORTHO05D006217 3.3e-35 152.1 113 67.3
EL10Ac9g22864 Beta vulgaris HOM05D004220 ORTHO05D006217 4.4e-35 151.8 113 67.3
VMungo0251G0500 Vigna mungo HOM05D004220 ORTHO05D006217 4.4e-35 151.8 113 66.4
AUR62015160 Chenopodium quinoa HOM05D004220 ORTHO05D006217 5.7e-35 151.4 113 65.5
AUR62017612 Chenopodium quinoa HOM05D004220 ORTHO05D006217 5.7e-35 151.4 113 65.5
TAR622G1230 Trochodendron aralioides HOM05D004220 ORTHO05D006217 5.7e-35 151.4 113 66.4
Ah.05g168430 Amaranthus hybridus HOM05D004220 ORTHO05D006217 7.5e-35 151.0 113 65.5
Oeu044002.1 Olea europaea HOM05D004220 ORTHO05D006217 7.5e-35 151.0 113 65.5
Eucgr.B03437 Eucalyptus grandis HOM05D004220 ORTHO05D006217 9.7e-35 150.6 113 66.4
Lj4g0025833 Lotus japonicus HOM05D004220 ORTHO05D006217 1.7e-34 149.8 113 65.5
LjContig00081g0015221 Lotus japonicus HOM05D004220 ORTHO05D006217 1.7e-34 149.8 113 65.5
PGSC0003DMG400022796 Solanum tuberosum HOM05D004220 ORTHO05D006217 1.7e-34 149.8 113 64.6
PSO541G1847 Papaver somniferum HOM05D004220 ORTHO05D006217 2.2e-34 149.4 113 68.1
HanXRQChr12g0364941 Helianthus annuus HOM05D004220 ORTHO05D006217 2.8e-34 149.1 113 67.3
Solyc01g005250.4 Solanum lycopersicum HOM05D004220 ORTHO05D006217 2.8e-34 149.1 113 63.7
Sopen01g001280 Solanum pennellii HOM05D004220 ORTHO05D006217 2.8e-34 149.1 113 63.7
TAR629G1713 Trochodendron aralioides HOM05D004220 ORTHO05D006217 2.8e-34 149.1 130 63.1
Phvul.002G323900 Phaseolus vulgaris HOM05D004220 ORTHO05D006217 3.7e-34 148.7 113 65.5
Peaxi162Scf00275g00215 Petunia axillaris HOM05D004220 ORTHO05D006217 6.3e-34 147.9 113 64.6
Migut.E00492 Erythranthe guttata HOM05D004220 ORTHO05D006217 8.2e-34 147.5 113 62.8
Glyma.05G240700 Glycine max HOM05D004220 ORTHO05D006217 8.2e-34 147.5 113 65.5
CANSAT78G0088 Cannabis sativa HOM05D004220 ORTHO05D006217 1.4e-33 146.7 123 61.8
Lalb_Chr16g0387441 Lupinus albus HOM05D004220 ORTHO05D006217 1.4e-33 146.7 113 64.6
PSO302G0185 Papaver somniferum HOM05D004220 ORTHO05D006217 1.4e-33 146.7 104 71.2
Aa31LG1G290 Aethionema arabicum HOM05D004220 ORTHO05D006217 1.8e-33 146.4 123 61.8
Aqoxy2G01924 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 1.8e-33 146.4 113 64.6
Aqoxy7G02277 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 1.8e-33 146.4 113 64.6
Glyma.08G047800 Glycine max HOM05D004220 ORTHO05D006217 1.8e-33 146.4 113 65.5
Lalb_Chr05g0222081 Lupinus albus HOM05D004220 ORTHO05D006217 1.8e-33 146.4 113 64.6
Actinidia12400 Actinidia chinensis HOM05D004220 ORTHO05D006217 2.4e-33 146.0 113 66.4
Aqoxy6G01748 Aquilegia oxysepala HOM05D004220 ORTHO05D006217 2.4e-33 146.0 113 64.6
arahy.Tifrunner.gnm1.ann1.GF1W8W Arachis hypogaea HOM05D004220 ORTHO05D006217 2.4e-33 146.0 113 65.5
MBI05_g37451_MAGBIO Magnolia biondii HOM05D004220 ORTHO05D006217 2.4e-33 146.0 113 66.4
Potri.010G105000 Populus trichocarpa HOM05D004220 ORTHO05D006217 2.4e-33 146.0 113 65.5
Potri.010G105300 Populus trichocarpa HOM05D004220 ORTHO05D006217 2.4e-33 146.0 113 65.5
Sabra08G0103700 Salix brachista HOM05D004220 ORTHO05D006217 2.4e-33 146.0 113 64.6
TAR629G0578 Trochodendron aralioides HOM05D004220 ORTHO05D006217 2.4e-33 146.0 130 61.5
MSTRG.13631 Avicennia marina HOM05D004220 ORTHO05D006217 3.1e-33 145.6 113 62.8
Thhalv10007952m.g Eutrema salsugineum HOM05D004220 ORTHO05D006217 3.1e-33 145.6 123 61.0
Manes.15G135500 Manihot esculenta HOM05D004220 ORTHO05D006217 3.1e-33 145.6 113 64.6
Psat4g004640 Pisum sativum HOM05D004220 ORTHO05D006217 3.1e-33 145.6 113 62.8
Sp1g13250 Schrenkiella parvula HOM05D004220 ORTHO05D006217 3.1e-33 145.6 123 61.0
SGA_v2.0_scaffold143G35733 Striga asiatica HOM05D004220 ORTHO05D006217 3.1e-33 145.6 127 58.3
Carub.0001s1460 Capsella rubella HOM05D004220 ORTHO05D006217 4.1e-33 145.2 123 61.0
BcaC07g38762 Brassica carinata HOM05D004220 ORTHO05D006217 5.3e-33 144.8 123 61.0
C08p16920 Brassica napus HOM05D004220 ORTHO05D006217 5.3e-33 144.8 123 61.0
BolC8t49319H Brassica oleracea HOM05D004220 ORTHO05D006217 5.3e-33 144.8 123 61.0
BraA08t35103Z Brassica rapa HOM05D004220 ORTHO05D006217 5.3e-33 144.8 123 61.0
SMO119G0035 Selaginella moellendorffii HOM05D004220 ORTHO05D006217 5.3e-33 144.8 127 56.7
BcaC05g25401 Brassica carinata HOM05D004220 ORTHO05D006217 7.0e-33 144.4 113 64.6
BolC5t30019H Brassica oleracea HOM05D004220 ORTHO05D006217 7.0e-33 144.4 113 64.6
BraA06t24264Z Brassica rapa HOM05D004220 ORTHO05D006217 7.0e-33 144.4 123 61.0
SEGI_30189 Sequoiadendron giganteum HOM05D004220 ORTHO05D006217 7.0e-33 144.4 113 62.8
unitig_27.g25162 Utricularia gibba HOM05D004220 ORTHO05D006217 7.0e-33 144.4 113 63.7
unitig_29.g31883 Utricularia gibba HOM05D004220 ORTHO05D006217 7.0e-33 144.4 113 63.7
AL1G26830 Arabidopsis lyrata HOM05D004220 ORTHO05D006217 9.1e-33 144.1 123 60.2
AT1G14810 Arabidopsis thaliana HOM05D004220 ORTHO05D006217 9.1e-33 144.1 123 61.0
BcaB03g13081 Brassica carinata HOM05D004220 ORTHO05D006217 9.1e-33 144.1 113 64.6
A06p10860 Brassica napus HOM05D004220 ORTHO05D006217 9.1e-33 144.1 113 64.6
Ciclev10015633m.g Citrus clementina HOM05D004220 ORTHO05D006217 9.1e-33 144.1 113 62.8
Nitab4.5_0000640g0100 Nicotiana tabacum HOM05D004220 ORTHO05D006217 9.1e-33 144.1 113 61.9
Potri.008G135700 Populus trichocarpa HOM05D004220 ORTHO05D006217 9.1e-33 144.1 113 63.7
Aqoxy6G01744 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 1.2e-32 143.7 113 63.7
A08p31810 Brassica napus HOM05D004220 ORTHO05D006217 1.2e-32 143.7 123 60.2
Cpa.g.sc2.184 Carica papaya HOM05D004220 ORTHO05D006217 1.2e-32 143.7 113 62.8
Dinv18907 Davidia involucrata HOM05D004220 ORTHO05D006217 1.2e-32 143.7 113 64.6
Medtr8g105860 Medicago truncatula HOM05D004220 ORTHO05D006217 1.2e-32 143.7 113 63.7
THA.LOC104805088 Tarenaya hassleriana HOM05D004220 ORTHO05D006217 1.2e-32 143.7 123 61.0
THA.LOC104824123 Tarenaya hassleriana HOM05D004220 ORTHO05D006217 1.2e-32 143.7 123 60.2
C05p12790 Brassica napus HOM05D004220 ORTHO05D006217 1.6e-32 143.3 113 63.7
CsaV3_5G014440 Cucumis sativus L. HOM05D004220 ORTHO05D006217 1.6e-32 143.3 123 60.2
PGR102G3065 Punica granatum HOM05D004220 ORTHO05D006217 1.6e-32 143.3 113 63.7
BcaB02g06550 Brassica carinata HOM05D004220 ORTHO05D006217 2.0e-32 142.9 123 60.2
Lalb_Chr09g0330781 Lupinus albus HOM05D004220 ORTHO05D006217 2.0e-32 142.9 113 62.8
QL03p036195 Quercus lobata HOM05D004220 ORTHO05D006217 2.0e-32 142.9 123 61.0
Ca_17252_v3 Cicer arietinum L. HOM05D004220 ORTHO05D006217 2.7e-32 142.5 113 62.8
Lsat_1_v5_gn_8_35340 Lactuca sativa HOM05D004220 ORTHO05D006217 2.7e-32 142.5 113 65.5
MD13G1019500 Malus domestica HOM05D004220 ORTHO05D006217 2.7e-32 142.5 113 62.8
ATR0763G027 Amborella trichopoda HOM05D004220 ORTHO05D006217 3.5e-32 142.1 113 65.5
CBR_g30041 Chara braunii HOM05D004220 ORTHO05D006217 3.5e-32 142.1 113 62.8
Sc17g0004200 Simmondsia chinensis HOM05D004220 ORTHO05D006217 3.5e-32 142.1 113 63.7
Atru.chr11.900 Acer truncatum HOM05D004220 ORTHO05D006217 4.5e-32 141.7 113 63.7
CARHR015340 Cardamine hirsuta HOM05D004220 ORTHO05D006217 4.5e-32 141.7 123 58.5
Gohir.D13G025700 Gossypium hirsutum HOM05D004220 ORTHO05D006217 4.5e-32 141.7 113 60.2
Gorai.013G028900 Gossypium raimondii HOM05D004220 ORTHO05D006217 4.5e-32 141.7 113 60.2
HanXRQChr06g0171081 Helianthus annuus HOM05D004220 ORTHO05D006217 4.5e-32 141.7 104 69.2
TWI74G0333 Tripterygium wilfordii HOM05D004220 ORTHO05D006217 4.5e-32 141.7 123 60.2
MELO3C010427.2 Cucumis melo HOM05D004220 ORTHO05D006217 5.9e-32 141.4 123 59.3
SGA_v2.0_scaffold23G10178 Striga asiatica HOM05D004220 ORTHO05D006217 5.9e-32 141.4 127 55.9
ClCG07G005480 Citrullus lanatus HOM05D004220 ORTHO05D006217 7.7e-32 141.0 123 60.2
Pp3c5_10760 Physcomitrium patens HOM05D004220 ORTHO05D006217 7.7e-32 141.0 113 61.1
CAN.G282.120 Capsicum annuum HOM05D004220 ORTHO05D006217 1.0e-31 140.6 113 60.2
CiPaw.06G053400 Carya illinoinensis HOM05D004220 ORTHO05D006217 1.3e-31 140.2 113 63.7
Dinv26357 Davidia involucrata HOM05D004220 ORTHO05D006217 1.3e-31 140.2 113 64.6
Sed0023691 Sechium edule HOM05D004220 ORTHO05D006217 1.7e-31 139.8 123 59.3
Duzib248G1338 Durio zibethinus HOM05D004220 ORTHO05D006217 2.9e-31 139.0 113 59.3
RcHm_v2.0_Chr4g0442761 Rosa chinensis HOM05D004220 ORTHO05D006217 2.9e-31 139.0 113 60.2
ECA233G3753 Erigeron canadensis HOM05D004220 ORTHO05D006217 3.8e-31 138.7 113 63.7
FAN17G0395 Fragaria x ananassa HOM05D004220 ORTHO05D006217 3.8e-31 138.7 113 61.1
MD16G1017700 Malus domestica HOM05D004220 ORTHO05D006217 3.8e-31 138.7 113 60.2
Gohir.A13G026900 Gossypium hirsutum HOM05D004220 ORTHO05D006217 5.0e-31 138.3 113 59.3
FAN07G0058 Fragaria x ananassa HOM05D004220 ORTHO05D006217 6.5e-31 137.9 113 61.1
FAN07G1238 Fragaria x ananassa HOM05D004220 ORTHO05D006217 6.5e-31 137.9 113 61.1
Prupe.1G334400 Prunus persica HOM05D004220 ORTHO05D006217 6.5e-31 137.9 113 61.1
Rhsim09G0088900 Rhododendron simsii HOM05D004220 ORTHO05D006217 6.5e-31 137.9 132 57.6
AagrBONN_evm.TU.Sc2ySwM_368.1674 Anthoceros agrestis HOM05D004220 ORTHO05D006217 8.5e-31 137.5 113 60.2
Cfa015032 Carpinus fangiana HOM05D004220 ORTHO05D006217 8.5e-31 137.5 113 61.9
COL.COLO4_27642 Corchorus olitorius HOM05D004220 ORTHO05D006217 1.1e-30 137.1 113 58.4
Haze_10865 Corylus avellana HOM05D004220 ORTHO05D006217 1.1e-30 137.1 113 61.9
Gohir.A12G154900 Gossypium hirsutum HOM05D004220 ORTHO05D006217 1.1e-30 137.1 113 59.3
Duzib251G0717 Durio zibethinus HOM05D004220 ORTHO05D006217 1.5e-30 136.7 113 58.4
FvH4_4g33450 Fragaria vesca HOM05D004220 ORTHO05D006217 1.9e-30 136.3 113 61.1
FAN12G0660 Fragaria x ananassa HOM05D004220 ORTHO05D006217 1.9e-30 136.3 113 61.1
Lj6A736T83 Lonicera japonica HOM05D004220 ORTHO05D006217 1.9e-30 136.3 113 60.2
Gohir.D12G158100 Gossypium hirsutum HOM05D004220 ORTHO05D006217 4.2e-30 135.2 113 57.5
Gorai.008G170900 Gossypium raimondii HOM05D004220 ORTHO05D006217 4.2e-30 135.2 113 57.5
HPP92_001024 Vanilla planifolia HOM05D004220 ORTHO05D006217 4.2e-30 135.2 113 62.8
DCAR_002675 Daucus carota HOM05D004220 ORTHO05D006217 5.5e-30 134.8 113 61.1
Thecc.02G309700 Theobroma cacao HOM05D004220 ORTHO05D006217 5.5e-30 134.8 113 57.5
Mapoly0086s0044 Marchantia polymorpha HOM05D004220 ORTHO05D006217 7.2e-30 134.4 113 59.3
DCAR_022139 Daucus carota HOM05D004220 ORTHO05D006217 9.4e-30 134.0 113 60.2
FAN22G0209 Fragaria x ananassa HOM05D004220 ORTHO05D006217 9.4e-30 134.0 113 60.2
Sed0000427 Sechium edule HOM05D004220 ORTHO05D006217 9.4e-30 134.0 123 57.7
Aqoxy5G02471 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 3.0e-28 129.0 83 73.5
Zm00001eb214360 Zea mays HOM05D004220 ORTHO05D006217 4.0e-28 128.6 114 55.3
Aqoxy5G02658 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 1.5e-27 126.7 81 74.1
Aqoxy5G02966 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 1.5e-27 126.7 81 74.1
Cre09.g389689 Chlamydomonas reinhardtii HOM05D004220 ORTHO05D006217 1.7e-26 123.2 127 52.0
Actinidia36618 Actinidia chinensis HOM05D004220 ORTHO05D006217 3.1e-25 119.0 112 56.2
MSTRG.2121 Avicennia marina HOM05D004220 ORTHO05D017372 7.0e-25 117.9 80 70.0
Os03g0760700 Oryza sativa ssp. japonica HOM05D004220 ORTHO05D006217 1.2e-24 117.1 114 53.5
MCO01G646 Micromonas commoda HOM05D004220 ORTHO05D006217 2.7e-24 115.9 107 51.4
TPR.G19271 Trifolium pratense HOM05D004220 ORTHO05D006217 1.1e-22 110.5 90 62.2
Aqoxy3G02388 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 5.4e-17 91.7 113 47.8
BcaB08g34410 Brassica carinata HOM05D001471 ORTHO05D001325 2.3e-12 76.3 80 53.8
PRCOL_00000291 Prasinoderma coloniale HOM05D004220 ORTHO05D006217 2.9e-10 69.3 75 48.0
Nitab4.5_0000198g0090 Nicotiana tabacum HOM05D004220 ORTHO05D006217 1.1e-09 67.4 64 50.0


User provided reference genes

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