Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE12G0809 Ceratophyllum demersum HOM05D000473 ORTHO05D006020 6.7e-70 267.7 186 100.0
CDE04G2470 Ceratophyllum demersum HOM05D000473 ORTHO05D006020 8.8e-30 134.4 81 85.2
AUR62005969 Chenopodium quinoa HOM05D000473 ORTHO05D006020 1.5e-16 90.5 85 58.8
Potri.012G007300 Populus trichocarpa HOM05D000473 ORTHO05D006020 1.5e-16 90.5 82 59.8
GSVIVG01038662001 Vitis vinifera HOM05D000473 ORTHO05D006020 4.3e-16 89.0 77 63.6
AUR62028101 Chenopodium quinoa HOM05D000473 ORTHO05D006020 5.6e-16 88.6 82 61.0
TAR629G1572 Trochodendron aralioides HOM05D000473 ORTHO05D006020 5.6e-16 88.6 82 58.5
Nn1g00470 Nelumbo nucifera HOM05D000473 ORTHO05D006020 7.3e-16 88.2 81 56.8
Nitab4.5_0000021g0060 Nicotiana tabacum HOM05D000473 ORTHO05D006020 7.3e-16 88.2 82 59.8
Nitab4.5_0004654g0030 Nicotiana tabacum HOM05D000473 ORTHO05D006020 7.3e-16 88.2 82 59.8
Potri.015G003900 Populus trichocarpa HOM05D000473 ORTHO05D006020 7.3e-16 88.2 82 58.5
RcHm_v2.0_Chr1g0383071 Rosa chinensis HOM05D000473 ORTHO05D006020 7.3e-16 88.2 82 59.8
Sc13g0010560 Simmondsia chinensis HOM05D000473 ORTHO05D006020 7.3e-16 88.2 82 56.1
Gohir.1Z049539 Gossypium hirsutum HOM05D000473 ORTHO05D006020 9.5e-16 87.8 82 58.5
Gohir.D04G000025 Gossypium hirsutum HOM05D000473 ORTHO05D006020 9.5e-16 87.8 82 58.5
Gohir.D04G000400 Gossypium hirsutum HOM05D000473 ORTHO05D006020 9.5e-16 87.8 82 58.5
Gorai.012G001300 Gossypium raimondii HOM05D000473 ORTHO05D006020 9.5e-16 87.8 82 58.5
BolC2t12071H Brassica oleracea HOM05D000473 ORTHO05D006020 1.2e-15 87.4 82 56.1
BraA02t08989Z Brassica rapa HOM05D000473 ORTHO05D006020 1.2e-15 87.4 82 56.1
Sabra15G0002600 Salix brachista HOM05D000473 ORTHO05D006020 1.2e-15 87.4 82 59.8
Cfa016146 Carpinus fangiana HOM05D000617 ORTHO05D000478 1.6e-15 87.0 83 56.6
Haze_00309 Corylus avellana HOM05D000473 ORTHO05D006020 1.6e-15 87.0 82 58.5
FAN03G0590 Fragaria x ananassa HOM05D000473 ORTHO05D006020 2.1e-15 86.7 82 59.8
Gohir.A12G245500 Gossypium hirsutum HOM05D000473 ORTHO05D006020 2.1e-15 86.7 82 58.5
Gohir.D12G246300 Gossypium hirsutum HOM05D000473 ORTHO05D006020 2.1e-15 86.7 82 58.5
Gorai.008G263900 Gossypium raimondii HOM05D000473 ORTHO05D006020 2.1e-15 86.7 82 58.5
Peaxi162Scf01447g00016 Petunia axillaris HOM05D000473 ORTHO05D006020 2.8e-15 86.3 82 57.3
RcHm_v2.0_Chr1g0330391 Rosa chinensis HOM05D000473 ORTHO05D006020 2.8e-15 86.3 82 58.5
BcaNung02011 Brassica carinata HOM05D000473 ORTHO05D006020 3.6e-15 85.9 82 56.1
C07p43130 Brassica napus HOM05D000473 ORTHO05D006020 3.6e-15 85.9 82 56.1
BolC7t44840H Brassica oleracea HOM05D000473 ORTHO05D006020 3.6e-15 85.9 82 56.1
BraA06t26461Z Brassica rapa HOM05D000473 ORTHO05D006020 3.6e-15 85.9 82 56.1
BcaC03g17959 Brassica carinata HOM05D000473 ORTHO05D006020 4.7e-15 85.5 82 54.9
BcaNung01244 Brassica carinata HOM05D000473 ORTHO05D006020 4.7e-15 85.5 82 54.9
Thecc.03G210200 Theobroma cacao HOM05D000473 ORTHO05D006020 4.7e-15 85.5 82 58.5
EL10Ac3g05152 Beta vulgaris HOM05D000473 ORTHO05D006020 6.1e-15 85.1 82 57.3
CAN.G303.42 Capsicum annuum HOM05D000473 ORTHO05D006020 6.1e-15 85.1 82 58.5
Cc02_g00720 Coffea canephora HOM05D000473 ORTHO05D006020 6.1e-15 85.1 77 62.3
Oeu037982.1 Olea europaea HOM05D000473 ORTHO05D006020 6.1e-15 85.1 82 57.3
Rhsim03G0216900 Rhododendron simsii HOM05D000473 ORTHO05D006020 6.1e-15 85.1 82 57.3
Sopen03g021830 Solanum pennellii HOM05D000473 ORTHO05D006020 6.1e-15 85.1 82 57.3
PGSC0003DMG400000556 Solanum tuberosum HOM05D000473 ORTHO05D006020 6.1e-15 85.1 82 57.3
BcaB07g29915 Brassica carinata HOM05D000473 ORTHO05D006020 8.0e-15 84.7 82 54.9
Dinv17290 Davidia involucrata HOM05D000473 ORTHO05D006020 8.0e-15 84.7 82 57.3
FAN10G3144 Fragaria x ananassa HOM05D000473 ORTHO05D006020 8.0e-15 84.7 82 58.5
Sabra12G0004300 Salix brachista HOM05D000010 ORTHO05D006020 8.0e-15 84.7 81 53.1
Sabra12G0008800 Salix brachista HOM05D000010 ORTHO05D006020 8.0e-15 84.7 81 53.1
A06p35360 Brassica napus HOM05D000473 ORTHO05D006020 1.0e-14 84.3 82 54.9
COL.COLO4_14384 Corchorus olitorius HOM05D000473 ORTHO05D006020 1.0e-14 84.3 82 56.1
Duzib205G0264 Durio zibethinus HOM05D000473 ORTHO05D006020 1.0e-14 84.3 82 54.9
Migut.F00138 Erythranthe guttata HOM05D000473 ORTHO05D006020 1.0e-14 84.3 82 56.1
Sp2g22800 Schrenkiella parvula HOM05D000473 ORTHO05D006020 1.0e-14 84.3 82 53.7
Actinidia34277 Actinidia chinensis HOM05D000473 ORTHO05D006020 1.4e-14 84.0 82 56.1
C02p60200 Brassica napus HOM05D000473 ORTHO05D006020 1.4e-14 84.0 82 53.7
FAN01G1919 Fragaria x ananassa HOM05D000473 ORTHO05D006020 1.4e-14 84.0 82 58.5
PGR042G1852 Punica granatum HOM05D000473 ORTHO05D006020 1.4e-14 84.0 82 57.3
Cpa.g.sc3.167 Carica papaya HOM05D000473 ORTHO05D006020 1.8e-14 83.6 81 51.9
FvH4_7g33060 Fragaria vesca HOM05D000473 ORTHO05D006020 1.8e-14 83.6 82 58.5
Nn3g18762 Nelumbo nucifera HOM05D000473 ORTHO05D006020 1.8e-14 83.6 78 57.7
Actinidia08708 Actinidia chinensis HOM05D000473 ORTHO05D006020 2.3e-14 83.2 82 56.1
Dinv29202 Davidia involucrata HOM05D000473 ORTHO05D006020 2.3e-14 83.2 82 56.1
MD01G1229700 Malus domestica HOM05D000473 ORTHO05D006020 2.3e-14 83.2 82 57.3
Atru.chr12.2486 Acer truncatum HOM05D000473 ORTHO05D006020 3.1e-14 82.8 82 54.9
Duzib084G0795 Durio zibethinus HOM05D000473 ORTHO05D006020 3.1e-14 82.8 82 54.9
Aa31LG11G3810 Aethionema arabicum HOM05D000473 ORTHO05D006020 4.0e-14 82.4 81 48.1
A02p40210 Brassica napus HOM05D000473 ORTHO05D006020 5.2e-14 82.0 77 55.8
Prupe.2G320300 Prunus persica HOM05D000473 ORTHO05D006020 5.2e-14 82.0 82 56.1
SGA_v2.0_scaffold18G08479 Striga asiatica HOM05D000473 ORTHO05D006020 5.2e-14 82.0 82 53.7
vmacro06455 Vaccinium macrocarpon HOM05D000473 ORTHO05D006020 5.2e-14 82.0 82 56.1
Solyc03g080100.4 Solanum lycopersicum HOM05D000473 ORTHO05D006020 6.8e-14 81.6 82 54.9
AL6G36180 Arabidopsis lyrata HOM05D000473 ORTHO05D006020 8.9e-14 81.3 83 54.2
MSTRG.8600 Avicennia marina HOM05D000473 ORTHO05D006020 8.9e-14 81.3 82 56.1
CSS0030649 Camellia sinensis var. sinensis HOM05D000473 ORTHO05D006020 8.9e-14 81.3 77 58.4
Hund09726 Selenicereus undatus HOM05D000473 ORTHO05D006020 8.9e-14 81.3 82 54.9
GSVIVG01001741001 Vitis vinifera HOM05D000473 ORTHO05D006020 8.9e-14 81.3 70 64.3
GSVIVG01003360001 Vitis vinifera HOM05D000473 ORTHO05D006020 8.9e-14 81.3 70 64.3
GSVIVG01026668001 Vitis vinifera HOM05D000473 ORTHO05D006020 8.9e-14 81.3 70 64.3
Lj3A893T78 Lonicera japonica HOM05D000473 ORTHO05D006020 1.2e-13 80.9 81 54.3
Manes.01G044400 Manihot esculenta HOM05D000473 ORTHO05D006020 1.2e-13 80.9 82 54.9
Aqoxy5G04365 Aquilegia oxysepala HOM05D000473 ORTHO05D006020 1.5e-13 80.5 82 53.7
AT5G24580 Arabidopsis thaliana HOM05D000473 ORTHO05D006020 1.5e-13 80.5 83 54.2
Carub.0006s2244 Capsella rubella HOM05D000473 ORTHO05D006020 1.5e-13 80.5 83 53.0
CARHR188870 Cardamine hirsuta HOM05D000473 ORTHO05D006020 1.5e-13 80.5 83 53.0
DCAR_020384 Daucus carota HOM05D000473 ORTHO05D006020 1.5e-13 80.5 82 56.1
Hma1.2p1_0094F.1_g047480 Hydrangea macrophylla HOM05D000473 ORTHO05D006020 1.5e-13 80.5 76 55.3
Ah.07g204570 Amaranthus hybridus HOM05D000473 ORTHO05D006020 2.0e-13 80.1 75 57.3
Ca_03309_v3 Cicer arietinum L. HOM05D000473 ORTHO05D006020 2.0e-13 80.1 82 54.9
Thhalv10004630m.g Eutrema salsugineum HOM05D000473 ORTHO05D006020 2.0e-13 80.1 83 54.2
Psat2g061200 Pisum sativum HOM05D000473 ORTHO05D006020 2.0e-13 80.1 82 54.9
THA.LOC104798990 Tarenaya hassleriana HOM05D000473 ORTHO05D006020 2.6e-13 79.7 82 52.4
ATR0579G024 Amborella trichopoda HOM05D000473 ORTHO05D006020 3.4e-13 79.3 82 51.2
Medtr5g069180 Medicago truncatula HOM05D000473 ORTHO05D006020 3.4e-13 79.3 82 53.7
PSO782G5162 Papaver somniferum HOM05D000473 ORTHO05D006020 3.4e-13 79.3 82 56.1
Peaxi162Scf00815g00020 Petunia axillaris HOM05D000473 ORTHO05D006020 3.4e-13 79.3 108 48.1
MD07G1301700 Malus domestica HOM05D000473 ORTHO05D006020 4.4e-13 79.0 81 51.9
PSO063G4186 Papaver somniferum HOM05D000473 ORTHO05D006020 4.4e-13 79.0 82 54.9
arahy.Tifrunner.gnm1.ann1.2S9XG1 Arachis hypogaea HOM05D000473 ORTHO05D006020 1.3e-12 77.4 82 53.7
arahy.Tifrunner.gnm1.ann1.R3RT9K Arachis hypogaea HOM05D000473 ORTHO05D006020 1.3e-12 77.4 82 53.7
CiPaw.06G039600 Carya illinoinensis HOM05D000473 ORTHO05D006020 1.7e-12 77.0 82 53.7
Lalb_Chr17g0344851 Lupinus albus HOM05D000473 ORTHO05D006020 1.7e-12 77.0 82 53.7
Nitab4.5_0002895g0010 Nicotiana tabacum HOM05D000473 ORTHO05D006020 2.2e-12 76.6 107 45.8
Glyma.02G222600 Glycine max HOM05D000473 ORTHO05D006020 2.9e-12 76.3 82 52.4
Glyma.14G189500 Glycine max HOM05D000473 ORTHO05D006020 2.9e-12 76.3 82 52.4
Lsat_1_v5_gn_8_3921 Lactuca sativa HOM05D000617 ORTHO05D000478 2.9e-12 76.3 77 54.5
PGR142G3498 Punica granatum HOM05D000473 ORTHO05D006020 2.9e-12 76.3 77 54.5
QL09p006741 Quercus lobata HOM05D000473 ORTHO05D006020 2.9e-12 76.3 82 53.7
Lalb_Chr10g0103101 Lupinus albus HOM05D000473 ORTHO05D006020 3.7e-12 75.9 82 52.4
CiPaw.05G206300 Carya illinoinensis HOM05D000473 ORTHO05D006020 4.9e-12 75.5 81 49.4
Lalb_Chr04g0252491 Lupinus albus HOM05D000473 ORTHO05D006020 4.9e-12 75.5 82 53.7
Eucgr.K00045 Eucalyptus grandis HOM05D000473 ORTHO05D006020 6.4e-12 75.1 82 53.7
LjContig00155g0027148 Lotus japonicus HOM05D000473 ORTHO05D006020 6.4e-12 75.1 82 51.2
Phvul.008G189300 Phaseolus vulgaris HOM05D000473 ORTHO05D006020 6.4e-12 75.1 82 52.4
VMungo0647G1015 Vigna mungo HOM05D000473 ORTHO05D006020 6.4e-12 75.1 82 52.4
TWI23G0704 Tripterygium wilfordii HOM05D000473 ORTHO05D006020 8.3e-12 74.7 77 55.8
Oeu017370.1 Olea europaea HOM05D000473 ORTHO05D006020 1.1e-11 74.3 81 49.4
Psat5g070960 Pisum sativum HOM05D000473 ORTHO05D006020 7.0e-11 71.6 77 54.5
CANSAT21G0472 Cannabis sativa HOM05D000473 ORTHO05D006020 9.2e-11 71.2 78 51.3
Lalb_Chr04g0252481 Lupinus albus HOM05D000473 ORTHO05D006020 1.2e-10 70.9 82 50.0
arahy.Tifrunner.gnm1.ann1.ZWX0IX Arachis hypogaea HOM05D000473 ORTHO05D006020 1.6e-10 70.5 81 45.7
Ca_16806_v3 Cicer arietinum L. HOM05D000473 ORTHO05D006020 2.0e-10 70.1 77 53.2
ECA233G4868 Erigeron canadensis HOM05D000473 ORTHO05D006020 2.0e-10 70.1 77 51.9
Solyc06g073070.2 Solanum lycopersicum HOM05D000473 ORTHO05D006020 2.0e-10 70.1 81 48.1
Medtr3g093020 Medicago truncatula HOM05D000473 ORTHO05D006020 2.7e-10 69.7 77 53.2
Sc19g0000490 Simmondsia chinensis HOM05D000473 ORTHO05D006020 2.7e-10 69.7 81 50.6
Sopen06g029420 Solanum pennellii HOM05D000473 ORTHO05D006020 2.7e-10 69.7 81 46.9
arahy.Tifrunner.gnm1.ann1.RVXC58 Arachis hypogaea HOM05D000473 ORTHO05D006020 3.5e-10 69.3 81 45.7
Ca_16790_v3 Cicer arietinum L. HOM05D000473 ORTHO05D006020 3.5e-10 69.3 91 47.3
HPP92_022292 Vanilla planifolia HOM05D000473 ORTHO05D006020 1.3e-09 67.4 83 48.2
TPR.G33377 Trifolium pratense HOM05D000473 ORTHO05D006020 2.3e-09 66.6 76 47.4
Glyma.15G198801 Glycine max HOM05D000473 ORTHO05D006020 6.6e-09 65.1 91 42.9
HanXRQChr08g0225901 Helianthus annuus HOM05D000473 ORTHO05D006020 6.6e-09 65.1 77 48.1
Lj1g0019242 Lotus japonicus HOM05D000473 ORTHO05D006020 8.6e-09 64.7 77 50.6
Phvul.009G038800 Phaseolus vulgaris HOM05D000473 ORTHO05D006020 8.6e-09 64.7 82 43.9
CAN.G65.150 Capsicum annuum HOM05D000473 ORTHO05D006020 1.1e-08 64.3 76 46.1
Glyma.04G227000 Glycine max HOM05D000473 ORTHO05D006020 3.3e-08 62.8 78 44.9
Sed0009512 Sechium edule HOM05D000473 ORTHO05D006020 5.6e-08 62.0 83 43.4
VMungo1309G2081 Vigna mungo HOM05D000473 ORTHO05D006020 9.5e-08 61.2 90 42.2
Lj1A1029T64 Lonicera japonica HOM05D000473 ORTHO05D006020 1.6e-07 60.5 75 40.0
Nn2g13643 Nelumbo nucifera HOM05D000473 ORTHO05D006020 1.6e-07 60.5 136 36.0
Os03g0861400 Oryza sativa ssp. japonica HOM05D000473 ORTHO05D006020 2.8e-07 59.7 90 42.2
GSVIVG01005642001 Vitis vinifera HOM05D000473 ORTHO05D006020 1.8e-06 57.0 49 61.2


User provided reference genes

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