Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE12G0763 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 2.5e-95 352.1 174 100.0
CDE01G0008 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 5.0e-51 204.9 118 83.1
CSS0031198 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 7.5e-23 111.3 120 52.5
PGSC0003DMG400026933 Solanum tuberosum HOM05D003592 ORTHO05D004208 2.8e-22 109.4 114 49.1
Sopen03g027580 Solanum pennellii HOM05D003592 ORTHO05D004208 4.9e-22 108.6 126 49.2
Solyc03g096840.4 Solanum lycopersicum HOM05D003592 ORTHO05D004208 8.3e-22 107.8 126 48.4
Dinv29178 Davidia involucrata HOM05D003592 ORTHO05D004208 9.2e-21 104.4 123 48.0
MBI04_g21153_MAGBIO Magnolia biondii HOM05D003592 ORTHO05D004208 9.2e-21 104.4 150 44.0
CAN.G303.68 Capsicum annuum HOM05D003592 ORTHO05D004208 2.7e-20 102.8 125 46.4
PGSC0003DMG400000541 Solanum tuberosum HOM05D003592 ORTHO05D004208 3.5e-20 102.4 128 45.3
MBI04_g29825_MAGBIO Magnolia biondii HOM05D000463 ORTHO05D013433 4.5e-20 102.1 84 59.5
TWI32G0722 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 1.7e-19 100.1 109 49.5
DCAR_010550 Daucus carota HOM05D003592 ORTHO05D004208 2.3e-19 99.8 115 45.2
Hma1.2p1_0758F.1_g213540 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 2.9e-19 99.4 122 47.5
Zm00001eb430170 Zea mays HOM05D003592 ORTHO05D004208 3.8e-19 99.0 100 53.0
AUR62005925 Chenopodium quinoa HOM05D003592 ORTHO05D004208 5.0e-19 98.6 96 51.0
Dinv17270 Davidia involucrata HOM05D003592 ORTHO05D004208 5.0e-19 98.6 126 46.8
Ca_24466_v3 Cicer arietinum L. HOM05D003592 ORTHO05D004208 6.6e-19 98.2 92 56.5
Nitab4.5_0002302g0040 Nicotiana tabacum HOM05D003592 ORTHO05D004208 8.6e-19 97.8 125 43.2
Actinidia08730 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.1e-18 97.4 117 47.9
CSS0018534 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 1.5e-18 97.1 132 43.9
vmacro06490 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 1.5e-18 97.1 126 44.4
MSTRG.8553 Avicennia marina HOM05D003592 ORTHO05D004208 1.9e-18 96.7 116 46.6
Nn3g19269 Nelumbo nucifera HOM05D003592 ORTHO05D004208 1.9e-18 96.7 130 46.9
TAR629G1675 Trochodendron aralioides HOM05D003592 ORTHO05D004208 1.9e-18 96.7 135 45.2
AUR62018884 Chenopodium quinoa HOM05D003592 ORTHO05D004208 2.5e-18 96.3 95 49.5
Atru.chr12.2033 Acer truncatum HOM05D003592 ORTHO05D004208 3.3e-18 95.9 84 57.1
Gorai.003G051000 Gossypium raimondii HOM05D003592 ORTHO05D004208 3.3e-18 95.9 128 46.1
Actinidia34296 Actinidia chinensis HOM05D003592 ORTHO05D004208 4.3e-18 95.5 120 45.8
Gohir.A02G139000 Gossypium hirsutum HOM05D003592 ORTHO05D004208 4.3e-18 95.5 129 47.3
Gohir.D03G049600 Gossypium hirsutum HOM05D003592 ORTHO05D004208 4.3e-18 95.5 129 47.3
Manes.09G123900 Manihot esculenta HOM05D003592 ORTHO05D004208 4.3e-18 95.5 121 45.5
Rhsim03G0219900 Rhododendron simsii HOM05D003592 ORTHO05D004208 4.3e-18 95.5 126 43.7
Glyma.01G230200 Glycine max HOM05D003592 ORTHO05D004208 5.6e-18 95.1 128 46.9
Duzib177G0010 Durio zibethinus HOM05D003592 ORTHO05D004208 7.3e-18 94.7 141 46.1
Actinidia18695 Actinidia chinensis HOM05D003592 ORTHO05D004208 9.5e-18 94.4 120 45.8
Manes.08G164900 Manihot esculenta HOM05D003592 ORTHO05D004208 1.2e-17 94.0 97 52.6
Medtr5g008210 Medicago truncatula HOM05D003592 ORTHO05D004208 1.2e-17 94.0 133 42.9
Cc02_g00450 Coffea canephora HOM05D003592 ORTHO05D004208 1.6e-17 93.6 101 51.5
Cc05_g00720 Coffea canephora HOM05D003592 ORTHO05D004208 1.6e-17 93.6 101 51.5
Hma1.2p1_1235F.1_g269160 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 1.6e-17 93.6 130 46.2
Nitab4.5_0000021g0300 Nicotiana tabacum HOM05D003592 ORTHO05D004208 2.1e-17 93.2 123 43.1
Oeu061060.1 Olea europaea HOM05D003592 ORTHO05D004208 3.6e-17 92.4 96 51.0
Sc13g0010720 Simmondsia chinensis HOM05D003592 ORTHO05D004208 4.7e-17 92.0 92 52.2
GSVIVG01024455001 Vitis vinifera HOM05D003592 ORTHO05D004208 4.7e-17 92.0 88 52.3
Actinidia28268 Actinidia chinensis HOM05D003592 ORTHO05D004208 6.1e-17 91.7 129 46.5
Ciclev10013115m.g Citrus clementina HOM05D003592 ORTHO05D004208 6.1e-17 91.7 94 52.1
Duzib106G0206 Durio zibethinus HOM05D003592 ORTHO05D004208 6.1e-17 91.7 136 44.9
MD01G1233000 Malus domestica HOM05D003592 ORTHO05D004208 6.1e-17 91.7 98 53.1
AT3G03150 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 8.0e-17 91.3 83 54.2
Peaxi162Scf01650g00057 Petunia axillaris HOM05D003592 ORTHO05D004208 8.0e-17 91.3 117 47.0
Potri.013G081700 Populus trichocarpa HOM05D003592 ORTHO05D004208 8.0e-17 91.3 104 49.0
Eucgr.A02956 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.0e-16 90.9 86 58.1
Oeu038117.1 Olea europaea HOM05D003592 ORTHO05D004208 1.0e-16 90.9 103 49.5
RcHm_v2.0_Chr1g0383761 Rosa chinensis HOM05D003592 ORTHO05D004208 1.0e-16 90.9 95 50.5
Migut.F00955 Erythranthe guttata HOM05D003592 ORTHO05D004208 1.4e-16 90.5 124 41.9
Eucgr.L03660 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.4e-16 90.5 123 46.3
MD07G1305300 Malus domestica HOM05D003592 ORTHO05D004208 1.4e-16 90.5 123 43.9
SGA_v2.0_scaffold18G08501 Striga asiatica HOM05D003592 ORTHO05D004208 1.4e-16 90.5 117 43.6
TPR.G37953 Trifolium pratense HOM05D003592 ORTHO05D004208 1.4e-16 90.5 103 52.4
TWI34G2026 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 1.4e-16 90.5 118 44.1
Aqoxy161s001 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 1.8e-16 90.1 84 53.6
Aqoxy161s002 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 1.8e-16 90.1 84 53.6
Aqoxy3G02065 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 1.8e-16 90.1 84 53.6
Aqoxy3G02066 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 1.8e-16 90.1 84 53.6
AL3G12760 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 1.8e-16 90.1 83 53.0
Sed0022386 Sechium edule HOM05D003592 ORTHO05D004208 1.8e-16 90.1 105 50.5
Peaxi162Scf00815g00250 Petunia axillaris HOM05D003592 ORTHO05D004208 2.3e-16 89.7 119 42.0
Thecc.05G207700 Theobroma cacao HOM05D003592 ORTHO05D004208 2.3e-16 89.7 135 43.0
FAN01G2998 Fragaria x ananassa HOM05D003592 ORTHO05D004208 3.0e-16 89.4 116 43.1
Prupe.2G323400 Prunus persica HOM05D003592 ORTHO05D004208 3.0e-16 89.4 123 43.9
Rhsim09G0211800 Rhododendron simsii HOM05D003592 ORTHO05D004208 3.0e-16 89.4 83 54.2
Eucgr.A02954 Eucalyptus grandis HOM05D003592 ORTHO05D004208 4.0e-16 89.0 90 52.2
vmacro10180 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 4.0e-16 89.0 93 51.6
arahy.Tifrunner.gnm1.ann1.F45BIC Arachis hypogaea HOM05D003592 ORTHO05D004208 5.2e-16 88.6 131 46.6
arahy.Tifrunner.gnm1.ann1.I6057L Arachis hypogaea HOM05D003592 ORTHO05D004208 5.2e-16 88.6 131 46.6
Nitab4.5_0000115g0310 Nicotiana tabacum HOM05D003592 ORTHO05D004208 5.2e-16 88.6 117 44.4
AUR62028136 Chenopodium quinoa HOM05D003592 ORTHO05D004208 6.8e-16 88.2 79 53.2
Nitab4.5_0006270g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 6.8e-16 88.2 116 45.7
Oeu063742.2 Olea europaea HOM05D003592 ORTHO05D004208 6.8e-16 88.2 97 51.5
SalBow2G2852 Salvia bowleyana HOM05D003592 ORTHO05D004208 6.8e-16 88.2 115 44.3
Sc19g0000280 Simmondsia chinensis HOM05D003592 ORTHO05D004208 6.8e-16 88.2 87 48.3
Solyc06g072840.3 Solanum lycopersicum HOM05D003592 ORTHO05D004208 6.8e-16 88.2 114 47.4
Sopen06g029220 Solanum pennellii HOM05D003592 ORTHO05D004208 6.8e-16 88.2 119 46.2
Ah.13g071180 Amaranthus hybridus HOM05D003592 ORTHO05D004208 8.9e-16 87.8 99 48.5
ATR0829G020 Amborella trichopoda HOM05D003592 ORTHO05D004208 8.9e-16 87.8 88 51.1
Carub.0003s0230 Capsella rubella HOM05D003592 ORTHO05D004208 8.9e-16 87.8 86 47.7
Cpa.g.sc39.41 Carica papaya HOM05D003592 ORTHO05D004208 8.9e-16 87.8 88 53.4
ClCG07G017260 Citrullus lanatus HOM05D003592 ORTHO05D004208 8.9e-16 87.8 89 56.2
FvH4_7g33540 Fragaria vesca HOM05D003592 ORTHO05D004208 8.9e-16 87.8 114 43.9
Os04g0598000 Oryza sativa ssp. japonica HOM05D003592 ORTHO05D004208 8.9e-16 87.8 96 51.0
Psat2g187520 Pisum sativum HOM05D003592 ORTHO05D004208 8.9e-16 87.8 110 53.6
MSTRG.14 Avicennia marina HOM05D003592 ORTHO05D004208 1.2e-15 87.4 121 42.1
Sabra13G0071400 Salix brachista HOM05D003592 ORTHO05D004208 1.2e-15 87.4 87 51.7
EL10Ac3g05109 Beta vulgaris HOM05D003592 ORTHO05D004208 1.5e-15 87.0 86 50.0
A05p44040 Brassica napus HOM05D003592 ORTHO05D004208 1.5e-15 87.0 107 44.9
BraSC90t46707Z Brassica rapa HOM05D003592 ORTHO05D004208 1.5e-15 87.0 107 44.9
FAN03G1827 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.5e-15 87.0 114 43.0
FAN10G0119 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.5e-15 87.0 114 43.0
FAN10G2200 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.5e-15 87.0 114 43.0
Lsat_1_v5_gn_0_9420 Lactuca sativa HOM05D003592 ORTHO05D004208 1.5e-15 87.0 117 41.9
PGR042G3489 Punica granatum HOM05D003592 ORTHO05D004208 1.5e-15 87.0 105 46.7
MELO3C017620.2 Cucumis melo HOM05D003592 ORTHO05D004208 2.0e-15 86.7 130 44.6
Duzib128G1398 Durio zibethinus HOM05D003592 ORTHO05D004208 2.0e-15 86.7 90 51.1
Peaxi162Scf00815g00235 Petunia axillaris HOM05D003592 ORTHO05D004208 2.0e-15 86.7 119 45.4
Hund21085 Selenicereus undatus HOM05D003592 ORTHO05D004208 2.0e-15 86.7 116 43.1
Nitab4.5_0000115g0330 Nicotiana tabacum HOM05D003592 ORTHO05D004208 2.6e-15 86.3 115 45.2
Haze_00584 Corylus avellana HOM05D003592 ORTHO05D004208 5.8e-15 85.1 132 43.2
COL.COLO4_08909 Corchorus olitorius HOM05D003592 ORTHO05D004208 7.5e-15 84.7 90 50.0
PSO063G2386 Papaver somniferum HOM05D003592 ORTHO05D004208 7.5e-15 84.7 108 44.4
TAR375G0874 Trochodendron aralioides HOM05D003592 ORTHO05D004208 7.5e-15 84.7 79 57.0
CsaV3_4G004470 Cucumis sativus L. HOM05D003592 ORTHO05D004208 9.8e-15 84.3 103 47.6
Nitab4.5_0003012g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.3e-14 84.0 115 44.3
BcaC05g30524 Brassica carinata HOM05D003592 ORTHO05D004208 1.7e-14 83.6 107 43.0
CARHR196060 Cardamine hirsuta HOM05D003592 ORTHO05D004208 2.2e-14 83.2 85 50.6
MSTRG.26939 Avicennia marina HOM05D003592 ORTHO05D004208 2.9e-14 82.8 114 44.7
BolC9t58839H Brassica oleracea HOM05D003592 ORTHO05D004208 2.9e-14 82.8 93 44.1
HanXRQChr02g0041191 Helianthus annuus HOM05D003592 ORTHO05D004208 2.9e-14 82.8 111 42.3
BcaC04g18828 Brassica carinata HOM05D003592 ORTHO05D004208 3.7e-14 82.4 93 44.1
BolC5t35035H Brassica oleracea HOM05D003592 ORTHO05D004208 3.7e-14 82.4 107 43.0
Carub.0006s1535 Capsella rubella HOM05D003592 ORTHO05D004208 3.7e-14 82.4 129 38.8
Sed0007086 Sechium edule HOM05D003592 ORTHO05D004208 3.7e-14 82.4 116 44.8
PGSC0003DMG400027031 Solanum tuberosum HOM05D003592 ORTHO05D004208 3.7e-14 82.4 126 45.2
CDE11G0498 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 4.9e-14 82.0 87 50.6
Phvul.002G036900 Phaseolus vulgaris HOM05D003592 ORTHO05D004208 4.9e-14 82.0 129 39.5
C05p63660 Brassica napus HOM05D003592 ORTHO05D004208 6.4e-14 81.6 107 43.0
CANSAT21G0974 Cannabis sativa HOM05D003592 ORTHO05D004208 6.4e-14 81.6 97 45.4
CiPaw.05G236400 Carya illinoinensis HOM05D003592 ORTHO05D004208 6.4e-14 81.6 135 43.7
Nn1g02028 Nelumbo nucifera HOM05D003592 ORTHO05D004208 6.4e-14 81.6 86 52.3
THA.LOC104827220 Tarenaya hassleriana HOM05D003592 ORTHO05D004208 6.4e-14 81.6 87 51.7
Aa31LG5G13630 Aethionema arabicum HOM05D003592 ORTHO05D004208 8.3e-14 81.3 89 44.9
Glyma.11G013200 Glycine max HOM05D003592 ORTHO05D004208 8.3e-14 81.3 120 41.7
Ah.04g157330 Amaranthus hybridus HOM05D003592 ORTHO05D004208 1.1e-13 80.9 89 47.2
AT5G17165 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 1.1e-13 80.9 110 40.9
BcaB08g36801 Brassica carinata HOM05D003592 ORTHO05D004208 1.4e-13 80.5 86 47.7
Migut.F00107 Erythranthe guttata HOM05D003592 ORTHO05D004208 1.4e-13 80.5 117 41.0
A10p22230 Brassica napus HOM05D003592 ORTHO05D004208 1.8e-13 80.1 97 45.4
C03p40480 Brassica napus HOM05D003592 ORTHO05D004208 1.8e-13 80.1 89 47.2
BolC3t16311H Brassica oleracea HOM05D003592 ORTHO05D004208 1.8e-13 80.1 89 47.2
BraA10t44282Z Brassica rapa HOM05D003592 ORTHO05D004208 1.8e-13 80.1 97 45.4
Oeu055446.1 Olea europaea HOM05D003592 ORTHO05D004208 1.8e-13 80.1 89 51.7
SEGI_37277 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 2.4e-13 79.7 114 41.2
Solyc06g072845.1 Solanum lycopersicum HOM05D003592 ORTHO05D004208 2.4e-13 79.7 122 42.6
HPP92_014744 Vanilla planifolia HOM05D003592 ORTHO05D004208 2.4e-13 79.7 96 46.9
A03p33220 Brassica napus HOM05D003592 ORTHO05D004208 3.2e-13 79.3 89 47.2
BraA03t12494Z Brassica rapa HOM05D003592 ORTHO05D004208 3.2e-13 79.3 89 47.2
Thhalv10021768m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 3.2e-13 79.3 85 45.9
BcaC01g04411 Brassica carinata HOM05D003592 ORTHO05D004208 4.1e-13 79.0 79 48.1
CARHR077170 Cardamine hirsuta HOM05D003592 ORTHO05D004208 4.1e-13 79.0 81 48.1
LjContig00222g0008170 Lotus japonicus HOM05D003592 ORTHO05D004208 4.1e-13 79.0 81 54.3
Sp3g02190 Schrenkiella parvula HOM05D003592 ORTHO05D004208 4.1e-13 79.0 86 45.3
SGA_v2.0_scaffold165G38224 Striga asiatica HOM05D003592 ORTHO05D004208 4.1e-13 79.0 120 40.8
unitig_62.g23842 Utricularia gibba HOM05D003592 ORTHO05D004208 5.4e-13 78.6 81 50.6
HanXRQChr09g0257211 Helianthus annuus HOM05D003592 ORTHO05D004208 7.0e-13 78.2 100 44.0
SEGI_20020 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 9.2e-13 77.8 134 37.3
AL6G28210 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 1.2e-12 77.4 114 40.4
Thhalv10017419m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 1.2e-12 77.4 85 44.7
BcaB04g19374 Brassica carinata HOM05D003592 ORTHO05D004208 1.6e-12 77.0 86 45.3
C09p60040 Brassica napus HOM05D003592 ORTHO05D004208 2.0e-12 76.6 86 43.0
Sopen06g029230 Solanum pennellii HOM05D003592 ORTHO05D004208 2.0e-12 76.6 125 42.4
Cfa015910 Carpinus fangiana HOM05D003592 ORTHO05D004208 2.7e-12 76.3 88 45.5
Peaxi162Scf00133g00111 Petunia axillaris HOM05D003592 ORTHO05D004208 6.0e-12 75.1 133 35.3
CDE02G0247 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 7.8e-12 74.7 89 46.1
ECA232G0247 Erigeron canadensis HOM05D003592 ORTHO05D004208 7.8e-12 74.7 106 39.6
Sp6g27060 Schrenkiella parvula HOM05D003592 ORTHO05D004208 7.8e-12 74.7 78 48.7
VMungo1215G0435 Vigna mungo HOM05D003592 ORTHO05D004208 7.8e-12 74.7 81 53.1
PSO170G2965 Papaver somniferum HOM05D003592 ORTHO05D004208 1.0e-11 74.3 86 44.2
Hund09766 Selenicereus undatus HOM05D003592 ORTHO05D004208 1.3e-11 73.9 95 44.2
ClCG01G004940 Citrullus lanatus HOM05D003592 ORTHO05D004208 2.3e-11 73.2 86 47.7
MELO3C005442.2 Cucumis melo HOM05D003592 ORTHO05D004208 2.3e-11 73.2 90 46.7
unitig_0.g1634 Utricularia gibba HOM05D003592 ORTHO05D004208 6.6e-11 71.6 80 40.0
HPP92_020885 Vanilla planifolia HOM05D003592 ORTHO05D004208 8.6e-11 71.2 99 44.4
QL09p026459 Quercus lobata HOM05D003592 ORTHO05D004208 1.5e-10 70.5 126 38.9
HPP92_014706 Vanilla planifolia HOM05D003592 ORTHO05D004208 1.5e-10 70.5 70 52.9
HPP92_020881 Vanilla planifolia HOM05D003592 ORTHO05D004208 1.5e-10 70.5 99 44.4
Eucgr.K00100 Eucalyptus grandis HOM05D003592 ORTHO05D004208 5.6e-10 68.6 75 42.7
CsaV3_5G005170 Cucumis sativus L. HOM05D003592 ORTHO05D004208 7.3e-10 68.2 87 43.7
SEGI_16015 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 7.3e-10 68.2 121 33.9
CiPaw.06G020500 Carya illinoinensis HOM05D003592 ORTHO05D004208 1.2e-09 67.4 90 44.4
Sed0014997 Sechium edule HOM05D003592 ORTHO05D004208 2.1e-09 66.6 96 38.5
SEGI_00089 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 2.8e-09 66.2 81 42.0
Actinidia08732 Actinidia chinensis HOM05D003592 ORTHO05D004208 6.2e-09 65.1 44 63.6
Sed0022343 Sechium edule HOM05D003592 ORTHO05D004208 1.5e-07 60.5 99 42.4
PGR142G3032 Punica granatum HOM05D003592 ORTHO05D004208 3.4e-07 59.3 88 38.6
HanXRQChr05g0137871 Helianthus annuus HOM05D003592 ORTHO05D029303 1.3e-06 57.4 104 32.7
Nitab4.5_0000750g0030 Nicotiana tabacum HOM05D003592 ORTHO05D004208 2.2e-06 56.6 77 44.2


User provided reference genes

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