Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE12G0498 Ceratophyllum demersum HOM05D004512 ORTHO05D005355 1.4e-107 392.9 190 100.0
MELO3C002086.2 Cucumis melo HOM05D004512 ORTHO05D005355 1.2e-45 187.2 101 86.1
CsaV3_1G006620 Cucumis sativus L. HOM05D004512 ORTHO05D005355 1.2e-45 187.2 101 86.1
DCAR_015141 Daucus carota HOM05D004512 ORTHO05D005355 2.6e-45 186.0 101 82.2
DCAR_011353 Daucus carota HOM05D004512 ORTHO05D005355 7.6e-45 184.5 98 83.7
QL10p025263 Quercus lobata HOM05D004512 ORTHO05D005355 1.4e-43 180.3 99 84.8
Sed0004773 Sechium edule HOM05D004512 ORTHO05D005355 1.4e-43 180.3 105 81.9
CiPaw.16G085900 Carya illinoinensis HOM05D004512 ORTHO05D005355 2.4e-43 179.5 100 83.0
Ciclev10022984m.g Citrus clementina HOM05D004512 ORTHO05D005355 2.4e-43 179.5 100 83.0
Lsat_1_v5_gn_8_144301 Lactuca sativa HOM05D004512 ORTHO05D005355 3.2e-43 179.1 105 78.1
Prupe.5G221100 Prunus persica HOM05D004512 ORTHO05D005355 5.5e-43 178.3 98 82.7
PGR142G1335 Punica granatum HOM05D004512 ORTHO05D005355 5.5e-43 178.3 98 86.7
CiPaw.15G130400 Carya illinoinensis HOM05D004512 ORTHO05D005355 7.1e-43 177.9 106 79.2
Hma1.2p1_0653F.1_g196320 Hydrangea macrophylla HOM05D004512 ORTHO05D005355 7.1e-43 177.9 105 80.0
CANSAT80G1137 Cannabis sativa HOM05D004512 ORTHO05D005355 2.7e-42 176.0 104 77.9
ECA233G5146 Erigeron canadensis HOM05D004512 ORTHO05D005355 2.7e-42 176.0 98 79.6
CANSAT80G2616 Cannabis sativa HOM05D004512 ORTHO05D005355 3.5e-42 175.6 104 77.9
HPP92_020802 Vanilla planifolia HOM05D004512 ORTHO05D005355 3.5e-42 175.6 106 80.2
Cfa019782 Carpinus fangiana HOM05D004512 ORTHO05D005355 6.0e-42 174.9 100 82.0
Ca_25495_v3 Cicer arietinum L. HOM05D004512 ORTHO05D005355 6.0e-42 174.9 102 80.4
Haze_18669 Corylus avellana HOM05D004512 ORTHO05D005355 6.0e-42 174.9 100 82.0
TAR374G1478 Trochodendron aralioides HOM05D004512 ORTHO05D005355 6.0e-42 174.9 102 80.4
Manes.01G011800 Manihot esculenta HOM05D004512 ORTHO05D005355 7.9e-42 174.5 101 83.2
Manes.05G137500 Manihot esculenta HOM05D004512 ORTHO05D005355 7.9e-42 174.5 101 83.2
TPR.G27937 Trifolium pratense HOM05D004512 ORTHO05D005355 7.9e-42 174.5 102 80.4
Oeu046994.1 Olea europaea HOM05D004512 ORTHO05D005355 1.0e-41 174.1 105 76.2
HanXRQChr08g0226081 Helianthus annuus HOM05D004512 ORTHO05D005355 1.3e-41 173.7 96 79.2
ClCG04G011140 Citrullus lanatus HOM05D004512 ORTHO05D005355 1.8e-41 173.3 105 78.1
Eucgr.K02221 Eucalyptus grandis HOM05D004512 ORTHO05D005355 1.8e-41 173.3 107 78.5
Sed0021676 Sechium edule HOM05D004512 ORTHO05D005355 1.8e-41 173.3 96 82.3
Atru.chr9.839 Acer truncatum HOM05D004512 ORTHO05D005355 2.3e-41 172.9 98 82.7
Nitab4.5_0006638g0020 Nicotiana tabacum HOM05D004512 ORTHO05D005355 2.3e-41 172.9 99 82.8
Sopen12g018390 Solanum pennellii HOM05D004512 ORTHO05D005355 2.3e-41 172.9 99 82.8
ClCG00G005470 Citrullus lanatus HOM05D004512 ORTHO05D005355 3.0e-41 172.6 95 84.2
Nitab4.5_0000208g0260 Nicotiana tabacum HOM05D004512 ORTHO05D005355 3.0e-41 172.6 99 81.8
Rhsim12G0143400 Rhododendron simsii HOM05D004512 ORTHO05D005355 3.0e-41 172.6 112 72.3
PGSC0003DMG400023110 Solanum tuberosum HOM05D004512 ORTHO05D005355 3.0e-41 172.6 99 80.8
CSS0004107 Camellia sinensis var. sinensis HOM05D004512 ORTHO05D005355 3.9e-41 172.2 102 80.4
Cc04_g07140 Coffea canephora HOM05D004512 ORTHO05D005355 3.9e-41 172.2 100 80.0
Peaxi162Scf00634g00116 Petunia axillaris HOM05D004512 ORTHO05D005355 3.9e-41 172.2 100 81.0
AUR62029861 Chenopodium quinoa HOM05D004512 ORTHO05D005355 5.1e-41 171.8 101 80.2
Glyma.09G184500 Glycine max HOM05D004512 ORTHO05D005355 5.1e-41 171.8 107 79.4
VMungo0464G1721 Vigna mungo HOM05D004512 ORTHO05D005355 5.1e-41 171.8 102 80.4
MSTRG.22945 Avicennia marina HOM05D004512 ORTHO05D005355 6.7e-41 171.4 107 73.8
Hund02392 Selenicereus undatus HOM05D004512 ORTHO05D005355 6.7e-41 171.4 101 79.2
EL10Ac5g11436 Beta vulgaris HOM05D004512 ORTHO05D005355 8.7e-41 171.0 105 77.1
arahy.Tifrunner.gnm1.ann1.HI5GUI Arachis hypogaea HOM05D004512 ORTHO05D005355 1.1e-40 170.6 97 83.5
arahy.Tifrunner.gnm1.ann1.K20T5Q Arachis hypogaea HOM05D004512 ORTHO05D005355 1.1e-40 170.6 97 83.5
MD06G1215900 Malus domestica HOM05D004512 ORTHO05D005355 1.1e-40 170.6 98 82.7
MD14G1226500 Malus domestica HOM05D004512 ORTHO05D005355 1.1e-40 170.6 98 82.7
Duzib205G0602 Durio zibethinus HOM05D004512 ORTHO05D005355 1.5e-40 170.2 101 80.2
Duzib205G1322 Durio zibethinus HOM05D004512 ORTHO05D005355 1.5e-40 170.2 101 80.2
Phvul.004G157200 Phaseolus vulgaris HOM05D004512 ORTHO05D005355 1.5e-40 170.2 102 78.4
Aqoxy3G00301 Aquilegia oxysepala HOM05D004512 ORTHO05D005355 1.9e-40 169.9 98 81.6
Duzib068G0917 Durio zibethinus HOM05D004512 ORTHO05D005355 1.9e-40 169.9 101 80.2
Potri.012G056900 Populus trichocarpa HOM05D004512 ORTHO05D005355 1.9e-40 169.9 105 77.1
Potri.015G054700 Populus trichocarpa HOM05D004512 ORTHO05D005355 2.5e-40 169.5 105 78.1
Sc12g0007720 Simmondsia chinensis HOM05D004512 ORTHO05D005355 2.5e-40 169.5 101 80.2
Thecc.03G034700 Theobroma cacao HOM05D004512 ORTHO05D005355 2.5e-40 169.5 107 78.5
AUR62025859 Chenopodium quinoa HOM05D004512 ORTHO05D005355 3.3e-40 169.1 101 79.2
SalBow5G1005 Salvia bowleyana HOM05D004512 ORTHO05D005355 3.3e-40 169.1 106 75.5
Gohir.A08G094600 Gossypium hirsutum HOM05D004512 ORTHO05D005355 4.3e-40 168.7 101 78.2
Gohir.A09G047600 Gossypium hirsutum HOM05D004512 ORTHO05D005355 4.3e-40 168.7 101 79.2
Gohir.D09G048700 Gossypium hirsutum HOM05D004512 ORTHO05D005355 4.3e-40 168.7 101 79.2
Lalb_Chr22g0353061 Lupinus albus HOM05D004512 ORTHO05D005355 5.6e-40 168.3 101 79.2
Sabra12G0040400 Salix brachista HOM05D004512 ORTHO05D005355 9.6e-40 167.5 105 77.1
Zm00001eb024750 Zea mays HOM05D004512 ORTHO05D005355 9.6e-40 167.5 105 74.3
Cpa.g.sc3.515 Carica papaya HOM05D004512 ORTHO05D005355 1.3e-39 167.2 102 78.4
Lj2g0019547 Lotus japonicus HOM05D004512 ORTHO05D005355 1.6e-39 166.8 102 76.5
Lalb_Chr24g0397761 Lupinus albus HOM05D004512 ORTHO05D005355 1.6e-39 166.8 101 78.2
Zm00001eb224900 Zea mays HOM05D004512 ORTHO05D005355 1.6e-39 166.8 98 77.6
Migut.I00347 Erythranthe guttata HOM05D004512 ORTHO05D005355 2.1e-39 166.4 105 72.4
vmacro12793 Vaccinium macrocarpon HOM05D004512 ORTHO05D005355 2.1e-39 166.4 100 78.0
CAN.G790.56 Capsicum annuum HOM05D004512 ORTHO05D005355 2.8e-39 166.0 96 81.2
Gohir.D08G105800 Gossypium hirsutum HOM05D004512 ORTHO05D005355 2.8e-39 166.0 101 78.2
Gorai.004G113100 Gossypium raimondii HOM05D004512 ORTHO05D005355 2.8e-39 166.0 101 78.2
CAN.G121.2 Capsicum annuum HOM05D004512 ORTHO05D005355 3.7e-39 165.6 96 80.2
TWI81G1036 Tripterygium wilfordii HOM05D004512 ORTHO05D005355 3.7e-39 165.6 100 76.0
TAR371G0608 Trochodendron aralioides HOM05D004512 ORTHO05D005355 4.8e-39 165.2 90 86.7
Gorai.006G061400 Gossypium raimondii HOM05D004512 ORTHO05D005355 6.2e-39 164.9 103 75.7
PSO782G2824 Papaver somniferum HOM05D004512 ORTHO05D005355 6.2e-39 164.9 100 76.0
ATR1125G038 Amborella trichopoda HOM05D004512 ORTHO05D005355 8.1e-39 164.5 95 80.0
Aa31LG10G4840 Aethionema arabicum HOM05D004512 ORTHO05D005355 1.1e-38 164.1 104 73.1
Glyma.07G091500 Glycine max HOM05D004512 ORTHO05D005355 1.4e-38 163.7 97 80.4
RcHm_v2.0_Chr7g0185431 Rosa chinensis HOM05D004512 ORTHO05D005355 1.4e-38 163.7 101 76.2
Sp1g36030 Schrenkiella parvula HOM05D004512 ORTHO05D005355 1.4e-38 163.7 110 70.9
CSS0044395 Camellia sinensis var. sinensis HOM05D004512 ORTHO05D005355 1.8e-38 163.3 101 77.2
Solyc12g036790.2 Solanum lycopersicum HOM05D004512 ORTHO05D005355 1.8e-38 163.3 96 81.2
AL1G56000 Arabidopsis lyrata HOM05D004512 ORTHO05D005355 2.4e-38 162.9 99 75.8
SGA_v2.0_scaffold25G10991 Striga asiatica HOM05D004512 ORTHO05D005355 4.0e-38 162.2 106 72.6
AT3G18410 Arabidopsis thaliana HOM05D004512 ORTHO05D005355 5.3e-38 161.8 101 75.2
Carub.0003s1819 Capsella rubella HOM05D004512 ORTHO05D005355 5.3e-38 161.8 101 75.2
Psat1g037680 Pisum sativum HOM05D004512 ORTHO05D005355 5.3e-38 161.8 96 79.2
SGA_v2.0_scaffold19G08815 Striga asiatica HOM05D004512 ORTHO05D005355 6.9e-38 161.4 100 76.0
AL3G31700 Arabidopsis lyrata HOM05D004512 ORTHO05D005355 9.0e-38 161.0 101 75.2
CARHR039120 Cardamine hirsuta HOM05D004512 ORTHO05D005355 9.0e-38 161.0 101 74.3
Thhalv10022379m.g Eutrema salsugineum HOM05D004512 ORTHO05D005355 1.2e-37 160.6 101 74.3
CARHR093770 Cardamine hirsuta HOM05D004512 ORTHO05D005355 1.5e-37 160.2 101 74.3
Medtr6g084520 Medicago truncatula HOM05D004512 ORTHO05D005355 1.5e-37 160.2 97 77.3
BcaB04g20765 Brassica carinata HOM05D004512 ORTHO05D005355 2.0e-37 159.8 101 73.3
BraA01t03675Z Brassica rapa HOM05D004512 ORTHO05D005355 2.0e-37 159.8 101 73.3
BcaC09g48802 Brassica carinata HOM05D004512 ORTHO05D005355 2.6e-37 159.5 101 73.3
C01p45770 Brassica napus HOM05D004512 ORTHO05D005355 2.6e-37 159.5 101 73.3
BolC1t04540H Brassica oleracea HOM05D004512 ORTHO05D005355 2.6e-37 159.5 101 73.3
THA.LOC104821841 Tarenaya hassleriana HOM05D004512 ORTHO05D005355 2.6e-37 159.5 101 74.3
Thhalv10011884m.g Eutrema salsugineum HOM05D004512 ORTHO05D005355 3.4e-37 159.1 101 73.3
AT1G49140 Arabidopsis thaliana HOM05D004512 ORTHO05D005355 4.5e-37 158.7 99 74.7
Carub.0001s3830 Capsella rubella HOM05D004512 ORTHO05D005355 4.5e-37 158.7 99 74.7
THA.LOC104820396 Tarenaya hassleriana HOM05D004512 ORTHO05D005355 4.5e-37 158.7 101 73.3
BcaC01g03699 Brassica carinata HOM05D004512 ORTHO05D005355 7.6e-37 157.9 101 73.3
BolC3t17241H Brassica oleracea HOM05D004512 ORTHO05D005355 7.6e-37 157.9 101 73.3
Aa31LG8G5240 Aethionema arabicum HOM05D004512 ORTHO05D005355 2.2e-36 156.4 101 72.3
BcaC05g28630 Brassica carinata HOM05D004512 ORTHO05D005355 2.2e-36 156.4 101 73.3
A03p40660 Brassica napus HOM05D004512 ORTHO05D005355 2.2e-36 156.4 101 72.3
A05p31210 Brassica napus HOM05D004512 ORTHO05D005355 2.2e-36 156.4 101 73.3
C05p47340 Brassica napus HOM05D004512 ORTHO05D005355 2.2e-36 156.4 101 73.3
BolC5t33461H Brassica oleracea HOM05D004512 ORTHO05D005355 2.2e-36 156.4 101 73.3
BraA03t13222Z Brassica rapa HOM05D004512 ORTHO05D005355 2.2e-36 156.4 101 72.3
BraA05t21962Z Brassica rapa HOM05D004512 ORTHO05D005355 2.2e-36 156.4 101 73.3
FvH4_5g12140 Fragaria vesca HOM05D004512 ORTHO05D005355 2.2e-36 156.4 99 75.8
FAN04G1546 Fragaria x ananassa HOM05D004512 ORTHO05D005355 2.2e-36 156.4 99 75.8
FAN08G0397 Fragaria x ananassa HOM05D004512 ORTHO05D005355 2.2e-36 156.4 99 75.8
FAN13G2727 Fragaria x ananassa HOM05D004512 ORTHO05D005355 2.2e-36 156.4 100 75.0
FAN18G2044 Fragaria x ananassa HOM05D004512 ORTHO05D005355 2.2e-36 156.4 99 75.8
BcaB04g18985 Brassica carinata HOM05D004512 ORTHO05D005355 3.8e-36 155.6 101 71.3
Sp3g16520 Schrenkiella parvula HOM05D004512 ORTHO05D005355 3.8e-36 155.6 101 71.3
FAN18G1297 Fragaria x ananassa HOM05D004512 ORTHO05D005355 8.4e-36 154.5 98 75.5
unitig_26.g9674 Utricularia gibba HOM05D004512 ORTHO05D005355 1.1e-35 154.1 101 72.3
BcaB06g25886 Brassica carinata HOM05D004512 ORTHO05D005355 1.4e-35 153.7 101 72.3
A01p35940 Brassica napus HOM05D004512 ORTHO05D005355 1.4e-35 153.7 97 73.2
C03p49450 Brassica napus HOM05D004512 ORTHO05D005355 5.5e-35 151.8 97 73.2
unitig_749.g13425 Utricularia gibba HOM05D004512 ORTHO05D005355 2.1e-34 149.8 101 71.3
Nitab4.5_0007985g0060 Nicotiana tabacum HOM05D004512 ORTHO05D005355 7.9e-34 147.9 83 78.3
TWI60G0557 Tripterygium wilfordii HOM05D004512 ORTHO05D005355 3.9e-33 145.6 95 71.6
HanXRQChr16g0517341 Helianthus annuus HOM05D004512 ORTHO05D005355 1.1e-32 144.1 83 77.1
COL.COLO4_05967 Corchorus olitorius HOM05D004512 ORTHO05D005355 1.8e-30 136.7 71 85.9
Nn3g17841 Nelumbo nucifera HOM05D004512 ORTHO05D005355 2.9e-28 129.4 67 86.6
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 3.0e-25 119.4 98 57.1
AagrBONN_evm.TU.Sc2ySwM_117.17 Anthoceros agrestis HOM05D004512 ORTHO05D005355 1.9e-24 116.7 83 67.5
AagrBONN_evm.TU.Sc2ySwM_228.463 Anthoceros agrestis HOM05D004512 ORTHO05D005355 3.3e-24 115.9 83 67.5
Pp3c9_26150 Physcomitrium patens HOM05D004512 ORTHO05D005355 3.3e-24 115.9 83 67.5
CAN.G133.16 Capsicum annuum HOM05D004512 ORTHO05D005355 1.6e-23 113.6 77 74.0
MD14G1197200 Malus domestica HOM05D004512 ORTHO05D005355 1.6e-23 113.6 74 78.4
CAN.G519.12 Capsicum annuum HOM05D004512 ORTHO05D005355 2.2e-23 113.2 71 74.6
Mapoly0004s0055 Marchantia polymorpha HOM05D004512 ORTHO05D005355 3.7e-23 112.5 83 63.9
SMO169G0039 Selaginella moellendorffii HOM05D004512 ORTHO05D005355 2.0e-21 106.7 84 56.0
MD15G1306200 Malus domestica HOM05D004512 ORTHO05D005355 2.6e-21 106.3 74 70.3
Prupe.2G045100 Prunus persica HOM05D004512 ORTHO05D005355 2.2e-20 103.2 66 75.8
Os10g0576000 Oryza sativa ssp. japonica HOM05D004512 ORTHO05D005355 3.6e-18 95.9 58 69.0
Prupe.1G218000 Prunus persica HOM05D004512 ORTHO05D005355 7.9e-18 94.7 98 55.1
MCO12G018 Micromonas commoda HOM05D004512 ORTHO05D005355 1.3e-15 87.4 75 50.7
SEGI_01620 Sequoiadendron giganteum HOM05D004512 ORTHO05D005355 1.8e-14 83.6 50 82.0
BcaB02g11300 Brassica carinata HOM05D004512 ORTHO05D005355 3.4e-13 79.3 69 55.1
PRCOL_00001312 Prasinoderma coloniale HOM05D004512 ORTHO05D005355 4.7e-10 68.9 92 39.1
Duzib084G0409 Durio zibethinus HOM05D004512 ORTHO05D005355 9.7e-08 61.2 54 61.1
Nitab4.5_0001194g0030 Nicotiana tabacum HOM05D004512 ORTHO05D005355 1.1e-06 57.8 48 58.3


User provided reference genes

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